Wall clock time and date at job start Tue Mar 31 2020 18:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99992 * 2 1 4 4 C 1.50704 * 109.46854 * 179.97438 * 3 2 1 5 5 N 1.30711 * 125.52935 * 269.95667 * 4 3 2 6 6 N 1.40442 * 106.79415 * 179.78668 * 5 4 3 7 7 H 0.96999 * 126.82196 * 180.25390 * 6 5 4 8 8 C 1.34432 * 106.35132 * 0.40700 * 6 5 4 9 9 C 1.50700 * 125.95978 * 179.85812 * 8 6 5 10 10 N 1.46500 * 109.47412 * 94.71167 * 9 8 6 11 11 S 1.65593 * 119.99925 * 164.99847 * 10 9 8 12 12 O 1.42096 * 106.40460 * 311.46213 * 11 10 9 13 13 O 1.42108 * 106.40218 * 178.54273 * 11 10 9 14 14 N 1.65606 * 107.21842 * 65.00539 * 11 10 9 15 15 C 1.46497 * 119.99739 * 269.99739 * 14 11 10 16 16 C 1.46497 * 120.00188 * 89.99816 * 14 11 10 17 17 H 1.09007 * 109.47078 * 359.97438 * 16 14 11 18 18 C 1.53000 * 109.47021 * 240.00233 * 16 14 11 19 19 C 1.50694 * 109.47115 * 120.00014 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 N 1.30832 * 108.07661 * 359.59211 * 8 6 5 28 28 H 1.09000 * 109.47375 * 299.99609 * 1 2 3 29 29 H 1.08996 * 109.47417 * 60.00349 * 1 2 3 30 30 H 1.09005 * 109.47193 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46950 * 60.00301 * 3 2 1 32 32 H 1.08994 * 109.46928 * 299.99679 * 3 2 1 33 33 H 1.09006 * 109.46596 * 334.71079 * 9 8 6 34 34 H 1.09004 * 109.47086 * 214.71379 * 9 8 6 35 35 H 0.97005 * 119.99538 * 345.00608 * 10 9 8 36 36 H 1.09001 * 109.46905 * 270.00036 * 15 14 11 37 37 H 1.09005 * 109.47144 * 29.99977 * 15 14 11 38 38 H 1.08993 * 109.47302 * 150.00165 * 15 14 11 39 39 H 1.08998 * 109.47089 * 59.99825 * 18 16 14 40 40 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 41 41 H 1.09002 * 109.47106 * 299.99878 * 18 16 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2694 1.1274 1.0647 6 7 5.5950 1.0169 0.6142 7 1 6.3918 0.9495 1.1631 8 6 5.5402 1.0265 -0.7290 9 6 6.7189 0.9332 -1.6634 10 7 6.9182 -0.4628 -2.0604 11 16 7.8873 -0.8257 -3.3531 12 8 7.4779 0.0271 -4.4135 13 8 7.9031 -2.2429 -3.4575 14 7 9.4283 -0.3690 -2.9541 15 6 9.8941 0.9852 -3.2628 16 6 10.3257 -1.3192 -2.2923 17 1 9.8074 -2.2669 -2.1457 18 6 10.7528 -0.7568 -0.9350 19 6 11.5446 -1.5402 -3.1505 20 1 11.6410 -1.0248 -4.0947 21 6 12.5363 -2.4013 -2.7308 22 7 12.4188 -3.0293 -1.5812 23 14 14.0468 -2.6758 -3.7950 24 1 14.9566 -3.6389 -3.1241 25 1 13.6318 -3.2214 -5.1122 26 1 14.7532 -1.3848 -3.9942 27 7 4.2847 1.1251 -1.0834 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 7.6130 1.2984 -1.1579 34 1 6.5292 1.5394 -2.5492 35 1 6.4823 -1.1746 -1.5660 36 1 10.3429 0.9974 -4.2561 37 1 9.0500 1.6745 -3.2370 38 1 10.6358 1.2913 -2.5252 39 1 9.8712 -0.5969 -0.3143 40 1 11.4201 -1.4639 -0.4424 41 1 11.2710 0.1910 -1.0812 42 1 13.1163 -3.6353 -1.2862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:53 Heat of formation + Delta-G solvation = -53.865808 kcal Electronic energy + Delta-G solvation = -26997.299050 eV Core-core repulsion = 22947.724606 eV Total energy + Delta-G solvation = -4049.574444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38472 -38.86149 -38.35575 -37.88340 -36.89637 -36.67055 -34.49916 -33.97663 -32.63242 -30.87282 -29.27796 -27.60517 -27.23751 -26.91723 -26.64454 -22.79028 -22.54863 -21.77804 -20.40263 -19.35854 -18.85248 -18.52713 -18.14631 -17.72588 -17.41008 -16.90299 -16.64095 -16.45740 -16.23984 -15.94889 -15.18757 -15.09099 -14.82579 -14.74626 -14.46460 -13.73924 -13.66683 -13.46911 -13.37599 -13.21678 -13.15035 -13.11442 -12.99898 -12.91002 -12.75422 -12.55281 -12.41545 -12.21714 -12.10991 -11.85805 -11.35092 -11.28464 -11.11806 -10.89703 -10.74360 -10.70058 -10.46996 -9.65700 -8.09629 -6.22185 -0.45415 0.31809 1.39381 1.44587 1.46762 1.47888 1.53248 2.10727 2.45047 2.54298 2.66418 3.11616 3.19382 3.38818 3.50099 3.62379 4.05404 4.19155 4.21501 4.29246 4.50593 4.54061 4.57001 4.62613 4.74710 4.88930 4.90728 4.98918 5.04478 5.10620 5.12691 5.19361 5.27954 5.65331 5.68327 5.88998 5.93602 5.96625 6.10213 6.19320 6.34726 6.85643 6.86330 7.46750 8.93943 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.002701 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.683642 B =10365.767426 C =10607.692565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.157 3.843 4 C 0.211 3.789 5 N -0.304 5.304 6 N -0.454 5.454 7 H 0.459 0.541 8 C 0.283 3.717 9 C 0.196 3.804 10 N -1.118 6.118 11 S 2.802 3.198 12 O -1.001 7.001 13 O -1.014 7.014 14 N -0.992 5.992 15 C 0.096 3.904 16 C 0.271 3.729 17 H 0.024 0.976 18 C -0.136 4.136 19 C -0.537 4.537 20 H 0.057 0.943 21 C 0.018 3.982 22 N -0.913 5.913 23 Si 0.951 3.049 24 H -0.284 1.284 25 H -0.281 1.281 26 H -0.265 1.265 27 N -0.538 5.538 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.421 0.579 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.627 13.169 6.683 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.078 3.922 4 C -0.072 4.072 5 N -0.136 5.136 6 N -0.175 5.175 7 H 0.309 0.691 8 C 0.003 3.997 9 C 0.068 3.932 10 N -0.880 5.880 11 S 2.811 3.189 12 O -0.984 6.984 13 O -0.998 6.998 14 N -0.835 5.835 15 C -0.049 4.049 16 C 0.167 3.833 17 H 0.042 0.958 18 C -0.196 4.196 19 C -0.576 4.576 20 H 0.075 0.925 21 C -0.182 4.182 22 N -0.553 5.553 23 Si 0.777 3.223 24 H -0.210 1.210 25 H -0.207 1.207 26 H -0.190 1.190 27 N -0.269 5.269 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.255 0.745 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.090 12.690 6.235 22.181 hybrid contribution 1.359 -0.720 0.289 1.564 sum -15.731 11.970 6.524 20.816 Atomic orbital electron populations 1.22991 0.77974 1.04133 1.01704 1.87896 1.22575 1.27332 1.95795 1.20610 0.81680 0.85817 1.04069 1.24335 0.98332 0.99073 0.85493 1.77946 0.87909 1.25112 1.22672 1.48011 1.08393 1.54850 1.06260 0.69081 1.24253 0.94688 0.96504 0.84289 1.19986 0.92478 0.82973 0.97728 1.55879 1.65622 1.13444 1.53097 1.01130 0.72597 0.71867 0.73310 1.93536 1.82379 1.69161 1.53315 1.93570 1.87262 1.32599 1.86374 1.57556 1.28319 1.22131 1.75450 1.21479 1.01354 0.80705 1.01356 1.18430 0.87996 0.86192 0.90690 0.95774 1.21919 1.00122 1.00664 0.96867 1.21646 1.04347 1.26079 1.05547 0.92486 1.25595 1.00916 0.95390 0.96286 1.69961 1.35087 1.29049 1.21179 0.85717 0.79524 0.78253 0.78762 1.20990 1.20708 1.19031 1.70368 1.00809 1.23952 1.31752 0.92043 0.92336 0.88747 0.88562 0.88763 0.85324 0.86063 0.74491 0.94121 0.89361 0.89812 0.93879 0.91861 0.93364 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.96 10.69 -148.98 -1.59 -10.55 16 3 C 0.16 2.86 6.56 71.24 0.47 3.33 16 4 C 0.21 5.15 7.77 138.63 1.08 6.23 16 5 N -0.30 -7.24 12.80 -51.33 -0.66 -7.90 16 6 N -0.45 -8.63 7.45 -50.70 -0.38 -9.01 16 7 H 0.46 5.63 8.96 -213.10 -1.91 3.72 16 8 C 0.28 6.13 7.63 138.22 1.06 7.18 16 9 C 0.20 3.78 6.87 85.63 0.59 4.37 16 10 N -1.12 -29.00 6.05 -190.78 -1.15 -30.15 16 11 S 2.80 100.65 6.09 -56.49 -0.34 100.31 16 12 O -1.00 -37.90 16.68 -128.00 -2.14 -40.04 16 13 O -1.01 -46.50 16.70 -128.00 -2.14 -48.64 16 14 N -0.99 -36.33 3.12 -520.46 -1.62 -37.95 16 15 C 0.10 2.81 9.53 127.77 1.22 4.02 16 16 C 0.27 12.40 2.62 44.24 0.12 12.51 16 17 H 0.02 1.28 6.91 -2.38 -0.02 1.27 16 18 C -0.14 -5.47 8.95 71.98 0.64 -4.82 16 19 C -0.54 -27.85 8.37 25.60 0.21 -27.64 16 20 H 0.06 2.94 7.65 -2.91 -0.02 2.92 16 21 C 0.02 0.95 5.30 84.66 0.45 1.40 16 22 N -0.91 -49.97 11.32 21.45 0.24 -49.73 16 23 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 N -0.54 -14.15 11.19 -179.72 -2.01 -16.16 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 1.55 8.14 -2.38 -0.02 1.54 16 34 H 0.12 2.27 7.75 -2.38 -0.02 2.25 16 35 H 0.42 10.56 8.64 -96.74 -0.84 9.72 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.86 7.79 -2.38 -0.02 1.84 16 38 H 0.08 2.27 6.43 -2.39 -0.02 2.26 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 41 H 0.05 1.77 6.66 -2.39 -0.02 1.75 16 42 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -76.58 367.87 -4.36 -80.94 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -1.67 Total: 16.30 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.08 Total: 8.17 kcal Atomic # 7 Polarization: -145.32 SS G_CDS: -5.58 Total: -150.90 kcal Atomic # 8 Polarization: -93.36 SS G_CDS: -5.87 Total: -99.23 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 100.65 SS G_CDS: -0.34 Total: 100.31 kcal Total: -76.58 -4.36 -80.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.075 kcal (2) G-P(sol) polarization free energy of solvation -76.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds