Wall clock time and date at job start Tue Mar 31 2020 18:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99601 * 2 1 4 4 C 1.50703 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.30715 * 125.52566 * 269.96114 * 4 3 2 6 6 N 1.40442 * 106.78751 * 179.78426 * 5 4 3 7 7 H 0.97003 * 126.82250 * 180.25437 * 6 5 4 8 8 C 1.34425 * 106.35964 * 0.40256 * 6 5 4 9 9 C 1.50692 * 125.96566 * 179.85967 * 8 6 5 10 10 N 1.46496 * 109.47552 * 94.71438 * 9 8 6 11 11 S 1.65599 * 120.00406 * 165.00070 * 10 9 8 12 12 O 1.42092 * 106.40305 * 311.45915 * 11 10 9 13 13 O 1.42104 * 106.40534 * 178.54120 * 11 10 9 14 14 N 1.65596 * 107.21899 * 65.00128 * 11 10 9 15 15 C 1.46508 * 119.99992 * 270.00259 * 14 11 10 16 16 C 1.46503 * 120.00083 * 89.99694 * 14 11 10 17 17 H 1.09000 * 109.47399 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46839 * 120.00020 * 16 14 11 19 19 C 1.50696 * 109.47460 * 240.00081 * 16 14 11 20 20 H 1.08002 * 119.99821 * 354.49228 * 19 16 14 21 21 C 1.37869 * 120.00229 * 174.49328 * 19 16 14 22 22 N 1.31515 * 120.00095 * 164.52587 * 21 19 16 23 23 Si 1.86802 * 120.00055 * 344.79770 * 21 19 16 24 24 H 1.48500 * 109.47226 * 269.72753 * 23 21 19 25 25 H 1.48504 * 109.46735 * 29.72658 * 23 21 19 26 26 H 1.48497 * 109.47182 * 149.72492 * 23 21 19 27 27 N 1.30838 * 108.07383 * 359.59595 * 8 6 5 28 28 H 1.09009 * 109.46643 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47144 * 300.00054 * 1 2 3 30 30 H 1.08995 * 109.46949 * 60.00559 * 1 2 3 31 31 H 1.09000 * 109.47341 * 60.00074 * 3 2 1 32 32 H 1.09001 * 109.47152 * 299.99969 * 3 2 1 33 33 H 1.08997 * 109.47273 * 334.71577 * 9 8 6 34 34 H 1.09004 * 109.47739 * 214.71515 * 9 8 6 35 35 H 0.97003 * 119.99910 * 344.99806 * 10 9 8 36 36 H 1.08998 * 109.46944 * 269.99791 * 15 14 11 37 37 H 1.08996 * 109.46907 * 29.99355 * 15 14 11 38 38 H 1.08998 * 109.46952 * 149.99713 * 15 14 11 39 39 H 1.08998 * 109.47107 * 173.76534 * 18 16 14 40 40 H 1.08996 * 109.47394 * 293.77303 * 18 16 14 41 41 H 1.09007 * 109.46851 * 53.77462 * 18 16 14 42 42 H 0.96993 * 120.00377 * 355.18434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2693 1.1275 1.0648 6 7 5.5949 1.0171 0.6142 7 1 6.3918 0.9498 1.1631 8 6 5.5403 1.0267 -0.7289 9 6 6.7189 0.9334 -1.6633 10 7 6.9182 -0.4625 -2.0603 11 16 7.8874 -0.8255 -3.3531 12 8 7.4780 0.0273 -4.4134 13 8 7.9033 -2.2426 -3.4574 14 7 9.4283 -0.3687 -2.9540 15 6 9.8941 0.9856 -3.2628 16 6 10.3258 -1.3189 -2.2921 17 1 9.8078 -2.2668 -2.1463 18 6 11.5633 -1.5433 -3.1635 19 6 10.7465 -0.7649 -0.9553 20 1 10.4548 0.2348 -0.6691 21 6 11.5037 -1.5342 -0.0977 22 7 12.1246 -0.9716 0.9160 23 14 11.6541 -3.3747 -0.3799 24 1 10.5707 -4.0780 0.3529 25 1 11.5382 -3.6639 -1.8319 26 1 12.9728 -3.8452 0.1148 27 7 4.2847 1.1253 -1.0834 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 7.6130 1.2986 -1.1579 34 1 6.5292 1.5396 -2.5492 35 1 6.4825 -1.1743 -1.5659 36 1 10.3429 0.9978 -4.2560 37 1 9.0500 1.6747 -3.2370 38 1 10.6358 1.2917 -2.5251 39 1 12.2804 -2.1618 -2.6238 40 1 11.2719 -2.0456 -4.0859 41 1 12.0192 -0.5822 -3.4015 42 1 12.1075 -0.0074 1.0205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771771930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:58 Heat of formation + Delta-G solvation = -25.589123 kcal Electronic energy + Delta-G solvation = -27263.882850 eV Core-core repulsion = 23215.534575 eV Total energy + Delta-G solvation = -4048.348275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40773 -38.12347 -36.94127 -36.48605 -35.57642 -35.47005 -33.00831 -32.70834 -31.61969 -29.94530 -28.50984 -26.62061 -25.96583 -25.78743 -24.75057 -21.79049 -20.85553 -20.76393 -19.10395 -18.32190 -17.69165 -17.36846 -17.00805 -16.91568 -16.38874 -15.92827 -15.70807 -15.32260 -15.03686 -14.18352 -14.10134 -13.86204 -13.71683 -13.32721 -13.04303 -12.91247 -12.70041 -12.27779 -12.18609 -12.10804 -11.88239 -11.82767 -11.74423 -11.69262 -11.63311 -11.40650 -10.85059 -10.59818 -10.36946 -10.30332 -10.16643 -10.04413 -9.89012 -9.71911 -9.58148 -9.24678 -8.55146 -8.22505 -6.59988 -4.27857 0.87242 1.33923 2.31007 2.43267 3.28987 3.34215 3.39587 3.42465 3.51414 3.87709 3.97461 4.32813 4.36592 4.47075 4.74826 4.88958 4.95474 5.05646 5.08173 5.09313 5.15808 5.35817 5.37431 5.41115 5.66168 5.93472 5.95411 6.07149 6.09296 6.30245 6.40536 6.47763 6.60206 6.74714 6.79837 6.84560 6.97939 7.22150 7.37945 7.83118 7.83166 8.19111 8.71103 9.40365 10.76165 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003424 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.481687 B = 8175.758871 C = 8933.525133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.160 3.840 4 C 0.221 3.779 5 N -0.288 5.288 6 N -0.463 5.463 7 H 0.448 0.552 8 C 0.283 3.717 9 C 0.204 3.796 10 N -1.122 6.122 11 S 2.785 3.215 12 O -0.987 6.987 13 O -0.976 6.976 14 N -0.984 5.984 15 C 0.103 3.897 16 C 0.243 3.757 17 H 0.050 0.950 18 C -0.152 4.152 19 C -0.611 4.611 20 H 0.065 0.935 21 C 0.039 3.961 22 N -0.900 5.900 23 Si 1.029 2.971 24 H -0.283 1.283 25 H -0.266 1.266 26 H -0.283 1.283 27 N -0.512 5.512 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.050 0.950 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 6.485 -2.367 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.081 3.919 4 C -0.062 4.062 5 N -0.120 5.120 6 N -0.183 5.183 7 H 0.296 0.704 8 C 0.003 3.997 9 C 0.074 3.926 10 N -0.882 5.882 11 S 2.793 3.207 12 O -0.970 6.970 13 O -0.960 6.960 14 N -0.827 5.827 15 C -0.044 4.044 16 C 0.139 3.861 17 H 0.068 0.932 18 C -0.212 4.212 19 C -0.649 4.649 20 H 0.083 0.917 21 C -0.168 4.168 22 N -0.533 5.533 23 Si 0.856 3.144 24 H -0.210 1.210 25 H -0.191 1.191 26 H -0.209 1.209 27 N -0.242 5.242 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.105 4.739 -2.297 15.996 hybrid contribution -0.130 1.468 0.451 1.541 sum -15.235 6.207 -1.846 16.554 Atomic orbital electron populations 1.22787 0.80016 1.03256 1.00242 1.87961 1.20252 1.26427 1.95501 1.20395 0.83227 0.85892 1.02402 1.23740 0.96968 0.99626 0.85862 1.77998 0.87207 1.24571 1.22258 1.48102 1.08382 1.55295 1.06504 0.70426 1.24200 0.94863 0.96725 0.83941 1.19625 0.91465 0.84505 0.96971 1.56083 1.66449 1.12027 1.53604 1.01834 0.72624 0.73134 0.73067 1.93570 1.81993 1.69127 1.52326 1.93604 1.86743 1.29769 1.85865 1.57550 1.28874 1.21234 1.75018 1.21278 1.00274 0.81847 1.00955 1.19064 0.87164 0.88059 0.91844 0.93187 1.22405 0.99665 1.00625 0.98464 1.22190 1.37907 1.03549 1.01291 0.91699 1.25639 0.92066 1.05941 0.93132 1.70833 1.38194 1.13190 1.31086 0.84321 0.77327 0.75735 0.77032 1.20989 1.19106 1.20899 1.70368 0.99790 1.23236 1.30757 0.89224 0.93749 0.93585 0.90641 0.90050 0.88728 0.86803 0.74938 0.93449 0.92932 0.89940 0.92243 0.95288 0.93126 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.54 10.69 -35.23 -0.38 -4.92 16 3 C 0.16 1.69 6.56 36.01 0.24 1.92 16 4 C 0.22 3.07 7.77 -156.85 -1.22 1.85 16 5 N -0.29 -4.06 12.80 32.42 0.41 -3.65 16 6 N -0.46 -5.80 7.45 32.62 0.24 -5.56 16 7 H 0.45 4.55 8.96 -182.33 -1.63 2.92 16 8 C 0.28 3.78 7.63 -155.70 -1.19 2.59 16 9 C 0.20 2.55 6.87 -5.20 -0.04 2.51 16 10 N -1.12 -16.57 6.05 -11.66 -0.07 -16.64 16 11 S 2.79 49.58 6.09 -107.50 -0.66 48.92 16 12 O -0.99 -18.49 16.68 -57.18 -0.95 -19.45 16 13 O -0.98 -20.38 16.70 -57.18 -0.95 -21.33 16 14 N -0.98 -18.10 3.12 -115.85 -0.36 -18.46 16 15 C 0.10 1.60 9.16 59.85 0.55 2.15 16 16 C 0.24 5.27 2.17 -69.08 -0.15 5.12 16 17 H 0.05 1.15 5.54 -51.93 -0.29 0.86 16 18 C -0.15 -3.12 8.57 37.16 0.32 -2.80 16 19 C -0.61 -14.75 8.37 -34.45 -0.29 -15.04 16 20 H 0.06 1.62 7.38 -52.49 -0.39 1.23 16 21 C 0.04 1.01 5.33 -17.82 -0.09 0.92 16 22 N -0.90 -25.13 13.70 55.43 0.76 -24.37 16 23 Si 1.03 23.46 26.17 -169.99 -4.45 19.01 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -5.65 5.53 56.52 0.31 -5.33 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 N -0.51 -7.58 11.19 -8.16 -0.09 -7.67 16 28 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 1.34 7.75 -51.93 -0.40 0.94 16 35 H 0.42 5.92 8.64 -34.47 -0.30 5.62 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 38 H 0.08 1.35 6.92 -51.93 -0.36 0.99 16 39 H 0.06 1.24 5.06 -51.93 -0.26 0.98 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 42 H 0.27 7.41 8.73 -40.82 -0.36 7.05 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -33.90 363.19 -8.83 -42.73 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.05 Total: 5.34 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.76 Total: 0.57 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: 0.89 Total: -76.35 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -2.29 Total: -45.70 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.45 Total: 19.01 kcal Atomic # 16 Polarization: 49.58 SS G_CDS: -0.66 Total: 48.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.90 -8.83 -42.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds