Wall clock time and date at job start Tue Mar 31 2020 18:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99601 * 2 1 4 4 C 1.50703 * 109.46949 * 179.97438 * 3 2 1 5 5 N 1.30715 * 125.52566 * 269.96114 * 4 3 2 6 6 N 1.40442 * 106.78751 * 179.78426 * 5 4 3 7 7 H 0.97003 * 126.82250 * 180.25437 * 6 5 4 8 8 C 1.34425 * 106.35964 * 0.40256 * 6 5 4 9 9 C 1.50692 * 125.96566 * 179.85967 * 8 6 5 10 10 N 1.46496 * 109.47552 * 94.71438 * 9 8 6 11 11 S 1.65599 * 120.00406 * 165.00070 * 10 9 8 12 12 O 1.42092 * 106.40305 * 311.45915 * 11 10 9 13 13 O 1.42104 * 106.40534 * 178.54120 * 11 10 9 14 14 N 1.65596 * 107.21899 * 65.00128 * 11 10 9 15 15 C 1.46508 * 119.99992 * 270.00259 * 14 11 10 16 16 C 1.46503 * 120.00083 * 89.99694 * 14 11 10 17 17 H 1.09000 * 109.47399 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46839 * 120.00020 * 16 14 11 19 19 C 1.50696 * 109.47460 * 240.00081 * 16 14 11 20 20 H 1.08002 * 119.99821 * 354.49228 * 19 16 14 21 21 C 1.37869 * 120.00229 * 174.49328 * 19 16 14 22 22 N 1.31515 * 120.00095 * 164.52587 * 21 19 16 23 23 Si 1.86802 * 120.00055 * 344.79770 * 21 19 16 24 24 H 1.48500 * 109.47226 * 269.72753 * 23 21 19 25 25 H 1.48504 * 109.46735 * 29.72658 * 23 21 19 26 26 H 1.48497 * 109.47182 * 149.72492 * 23 21 19 27 27 N 1.30838 * 108.07383 * 359.59595 * 8 6 5 28 28 H 1.09009 * 109.46643 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47144 * 300.00054 * 1 2 3 30 30 H 1.08995 * 109.46949 * 60.00559 * 1 2 3 31 31 H 1.09000 * 109.47341 * 60.00074 * 3 2 1 32 32 H 1.09001 * 109.47152 * 299.99969 * 3 2 1 33 33 H 1.08997 * 109.47273 * 334.71577 * 9 8 6 34 34 H 1.09004 * 109.47739 * 214.71515 * 9 8 6 35 35 H 0.97003 * 119.99910 * 344.99806 * 10 9 8 36 36 H 1.08998 * 109.46944 * 269.99791 * 15 14 11 37 37 H 1.08996 * 109.46907 * 29.99355 * 15 14 11 38 38 H 1.08998 * 109.46952 * 149.99713 * 15 14 11 39 39 H 1.08998 * 109.47107 * 173.76534 * 18 16 14 40 40 H 1.08996 * 109.47394 * 293.77303 * 18 16 14 41 41 H 1.09007 * 109.46851 * 53.77462 * 18 16 14 42 42 H 0.96993 * 120.00377 * 355.18434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2693 1.1275 1.0648 6 7 5.5949 1.0171 0.6142 7 1 6.3918 0.9498 1.1631 8 6 5.5403 1.0267 -0.7289 9 6 6.7189 0.9334 -1.6633 10 7 6.9182 -0.4625 -2.0603 11 16 7.8874 -0.8255 -3.3531 12 8 7.4780 0.0273 -4.4134 13 8 7.9033 -2.2426 -3.4574 14 7 9.4283 -0.3687 -2.9540 15 6 9.8941 0.9856 -3.2628 16 6 10.3258 -1.3189 -2.2921 17 1 9.8078 -2.2668 -2.1463 18 6 11.5633 -1.5433 -3.1635 19 6 10.7465 -0.7649 -0.9553 20 1 10.4548 0.2348 -0.6691 21 6 11.5037 -1.5342 -0.0977 22 7 12.1246 -0.9716 0.9160 23 14 11.6541 -3.3747 -0.3799 24 1 10.5707 -4.0780 0.3529 25 1 11.5382 -3.6639 -1.8319 26 1 12.9728 -3.8452 0.1148 27 7 4.2847 1.1253 -1.0834 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 7.6130 1.2986 -1.1579 34 1 6.5292 1.5396 -2.5492 35 1 6.4825 -1.1743 -1.5659 36 1 10.3429 0.9978 -4.2560 37 1 9.0500 1.6747 -3.2370 38 1 10.6358 1.2917 -2.5251 39 1 12.2804 -2.1618 -2.6238 40 1 11.2719 -2.0456 -4.0859 41 1 12.0192 -0.5822 -3.4015 42 1 12.1075 -0.0074 1.0205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771771930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:57 Heat of formation + Delta-G solvation = -54.095819 kcal Electronic energy + Delta-G solvation = -27265.118993 eV Core-core repulsion = 23215.534575 eV Total energy + Delta-G solvation = -4049.584418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.42833 -38.87945 -38.44218 -38.05567 -36.97806 -36.71341 -34.58209 -34.00826 -32.67664 -31.59604 -29.30010 -27.67529 -27.17581 -26.66181 -26.57797 -22.81773 -22.46408 -21.81019 -20.50265 -19.48637 -19.39967 -18.82524 -18.41440 -17.79155 -17.51592 -16.82599 -16.57083 -16.47820 -16.19861 -15.70938 -15.47553 -15.14375 -14.89741 -14.83313 -14.58811 -13.92292 -13.71903 -13.56708 -13.51072 -13.47967 -13.27029 -13.23619 -13.20469 -13.03457 -12.97983 -12.46798 -12.43258 -12.20433 -11.89304 -11.42155 -11.39622 -11.33647 -11.10189 -10.94508 -10.77932 -10.73801 -10.45866 -9.82485 -8.61076 -6.28723 -0.49446 0.27202 1.34273 1.41774 1.52854 1.55139 1.71523 1.98620 2.47575 2.50799 2.58655 3.07633 3.12337 3.31723 3.45631 3.57666 3.95369 4.13452 4.16499 4.23387 4.47565 4.49926 4.53044 4.55036 4.61141 4.70362 4.79468 4.87703 4.88539 4.93853 4.97011 5.10068 5.15611 5.33661 5.54391 5.66708 5.86861 5.89295 6.01071 6.08577 6.16131 6.71801 6.80989 7.44239 8.74021 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003424 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.481687 B = 8175.758871 C = 8933.525133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.158 3.842 4 C 0.212 3.788 5 N -0.306 5.306 6 N -0.457 5.457 7 H 0.457 0.543 8 C 0.283 3.717 9 C 0.200 3.800 10 N -1.119 6.119 11 S 2.804 3.196 12 O -0.994 6.994 13 O -1.007 7.007 14 N -0.988 5.988 15 C 0.095 3.905 16 C 0.242 3.758 17 H 0.041 0.959 18 C -0.154 4.154 19 C -0.590 4.590 20 H 0.053 0.947 21 C -0.004 4.004 22 N -0.937 5.937 23 Si 1.052 2.948 24 H -0.280 1.280 25 H -0.242 1.242 26 H -0.288 1.288 27 N -0.534 5.534 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.421 0.579 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 6.884 -3.301 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.079 3.921 4 C -0.071 4.071 5 N -0.138 5.138 6 N -0.178 5.178 7 H 0.306 0.694 8 C 0.003 3.997 9 C 0.072 3.928 10 N -0.880 5.880 11 S 2.812 3.188 12 O -0.977 6.977 13 O -0.991 6.991 14 N -0.830 5.830 15 C -0.050 4.050 16 C 0.136 3.864 17 H 0.059 0.941 18 C -0.214 4.214 19 C -0.629 4.629 20 H 0.071 0.929 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.875 3.125 24 H -0.206 1.206 25 H -0.166 1.166 26 H -0.214 1.214 27 N -0.265 5.265 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.169 5.154 -3.247 17.278 hybrid contribution 0.098 1.434 0.724 1.610 sum -16.070 6.588 -2.523 17.551 Atomic orbital electron populations 1.23001 0.77907 1.04172 1.01726 1.87899 1.22633 1.27233 1.95800 1.20612 0.81406 0.85883 1.04152 1.24404 0.98421 0.98888 0.85421 1.77961 0.87740 1.25251 1.22877 1.48078 1.08445 1.54826 1.06471 0.69409 1.24250 0.94780 0.96507 0.84206 1.19863 0.92057 0.83253 0.97629 1.55821 1.65803 1.13276 1.53099 1.01135 0.72376 0.72132 0.73121 1.93559 1.82009 1.69088 1.53080 1.93558 1.87158 1.31862 1.86539 1.57461 1.28810 1.21900 1.74802 1.21489 1.01406 0.80911 1.01230 1.18876 0.88161 0.88212 0.91127 0.94080 1.22377 0.98868 1.01350 0.98799 1.22335 1.35836 1.02635 1.02084 0.92888 1.26523 0.92275 1.08599 0.93113 1.70929 1.40800 1.12578 1.32993 0.84034 0.77107 0.72851 0.78461 1.20620 1.16554 1.21377 1.70371 1.00476 1.24044 1.31581 0.88675 0.92111 0.92222 0.88609 0.88518 0.86793 0.85684 0.74532 0.92248 0.90033 0.90938 0.92925 0.93690 0.92159 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.40 10.69 -148.98 -1.59 -10.99 16 3 C 0.16 3.11 6.56 71.24 0.47 3.58 16 4 C 0.21 5.66 7.77 138.63 1.08 6.74 16 5 N -0.31 -8.37 12.80 -51.33 -0.66 -9.03 16 6 N -0.46 -11.01 7.45 -50.71 -0.38 -11.39 16 7 H 0.46 8.87 8.96 -213.10 -1.91 6.96 16 8 C 0.28 7.18 7.63 138.22 1.05 8.23 16 9 C 0.20 4.62 6.87 85.63 0.59 5.21 16 10 N -1.12 -31.21 6.05 -190.81 -1.15 -32.36 16 11 S 2.80 94.63 6.09 -56.49 -0.34 94.28 16 12 O -0.99 -34.95 16.68 -128.00 -2.14 -37.08 16 13 O -1.01 -40.69 16.70 -128.00 -2.14 -42.83 16 14 N -0.99 -34.30 3.12 -520.43 -1.62 -35.92 16 15 C 0.09 2.72 9.16 127.77 1.17 3.89 16 16 C 0.24 10.07 2.17 44.24 0.10 10.17 16 17 H 0.04 1.82 5.54 -2.39 -0.01 1.80 16 18 C -0.15 -6.00 8.57 71.98 0.62 -5.39 16 19 C -0.59 -27.99 8.37 25.60 0.21 -27.78 16 20 H 0.05 2.61 7.38 -2.91 -0.02 2.59 16 21 C 0.00 -0.23 5.33 84.65 0.45 0.22 16 22 N -0.94 -52.83 13.70 21.44 0.29 -52.54 16 23 Si 1.05 46.53 26.17 68.60 1.80 48.32 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.24 -9.67 5.53 99.48 0.55 -9.12 16 26 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 27 N -0.53 -15.23 11.19 -179.73 -2.01 -17.24 16 28 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.13 2.64 7.75 -2.38 -0.02 2.62 16 35 H 0.42 11.43 8.64 -96.74 -0.84 10.59 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 38 H 0.07 2.24 6.92 -2.39 -0.02 2.22 16 39 H 0.05 2.10 5.06 -2.39 -0.01 2.09 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.18 7.47 -2.38 -0.02 2.17 16 42 H 0.26 14.55 8.73 -92.71 -0.81 13.74 16 Total: -1.00 -71.21 363.19 -4.82 -76.03 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -1.87 Total: 24.26 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.98 Total: 6.48 kcal Atomic # 7 Polarization: -152.95 SS G_CDS: -5.53 Total: -158.47 kcal Atomic # 8 Polarization: -85.04 SS G_CDS: -5.87 Total: -90.91 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.80 Total: 48.32 kcal Atomic # 16 Polarization: 94.63 SS G_CDS: -0.34 Total: 94.28 kcal Total: -71.21 -4.82 -76.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771771930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.938 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds