Wall clock time and date at job start Tue Mar 31 2020 18:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47189 * 2 1 4 4 C 1.50705 * 109.47126 * 119.99784 * 2 1 3 5 5 H 1.07990 * 119.99758 * 120.00059 * 4 2 1 6 6 C 1.37881 * 119.99717 * 299.99676 * 4 2 1 7 7 N 1.31512 * 119.99971 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99558 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46934 * 60.00385 * 8 6 4 10 10 H 1.48501 * 109.46879 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46999 * 299.99998 * 8 6 4 12 12 C 1.50702 * 109.46952 * 239.99693 * 2 1 3 13 13 O 1.21284 * 119.99892 * 240.00080 * 12 2 1 14 14 N 1.34773 * 119.99857 * 60.00038 * 12 2 1 15 15 C 1.46504 * 119.99805 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47081 * 179.97438 * 15 14 12 17 17 N 1.31134 * 126.54763 * 90.00406 * 16 15 14 18 18 C 1.34492 * 105.61385 * 179.97438 * 17 16 15 19 19 C 1.50703 * 126.28597 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47405 * 89.99715 * 19 18 17 21 21 C 1.38216 * 120.01312 * 264.72579 * 20 19 18 22 22 C 1.38219 * 120.02585 * 179.72212 * 21 20 19 23 23 C 1.38271 * 120.05258 * 0.55336 * 22 21 20 24 24 C 1.38180 * 120.02153 * 359.71998 * 23 22 21 25 25 C 1.38443 * 120.01321 * 84.99939 * 20 19 18 26 26 F 1.35106 * 120.02324 * 359.97438 * 25 20 19 27 27 N 1.29951 * 107.42553 * 359.97438 * 18 17 16 28 28 O 1.21300 * 110.25010 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46733 * 300.00267 * 1 2 3 31 31 H 1.09001 * 109.47182 * 60.00121 * 1 2 3 32 32 H 0.97008 * 119.99546 * 179.97438 * 7 6 4 33 33 H 0.96994 * 120.00490 * 359.97438 * 14 12 2 34 34 H 1.09007 * 109.46840 * 60.00383 * 15 14 12 35 35 H 1.08994 * 109.47251 * 300.00535 * 15 14 12 36 36 H 1.09006 * 109.46887 * 209.99813 * 19 18 17 37 37 H 1.09002 * 109.46861 * 329.99190 * 19 18 17 38 38 H 1.08001 * 119.98585 * 359.97438 * 21 20 19 39 39 H 1.07998 * 119.97793 * 180.29563 * 22 21 20 40 40 H 1.07998 * 119.99256 * 179.74476 * 23 22 21 41 41 H 1.08002 * 120.01288 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6033 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1207 4.0082 10 1 1.8261 -0.4203 5.2205 11 1 1.8258 -2.5200 4.0078 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.1955 -0.9404 -3.6507 16 6 1.6925 -0.2305 -4.8812 17 7 2.2917 0.7461 -5.5189 18 6 1.4805 1.0598 -6.5449 19 6 1.7239 2.1277 -7.5800 20 6 2.4755 1.5364 -8.7447 21 6 3.8527 1.6384 -8.8023 22 6 4.5428 1.0912 -9.8675 23 6 3.8556 0.4512 -10.8824 24 6 2.4783 0.3530 -10.8298 25 6 1.7863 0.8959 -9.7602 26 9 0.4397 0.8000 -9.7075 27 7 0.4489 0.2722 -6.4802 28 8 0.5517 -0.4773 -5.5320 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7083 1.1611 3.4844 33 1 1.1488 0.5383 -2.5436 34 1 1.8325 -1.9683 -3.6508 35 1 3.2854 -0.9401 -3.6505 36 1 0.7687 2.5222 -7.9266 37 1 2.3114 2.9333 -7.1396 38 1 4.3901 2.1423 -8.0125 39 1 5.6193 1.1671 -9.9093 40 1 4.3954 0.0276 -11.7164 41 1 1.9416 -0.1466 -11.6228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771900648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:52 Heat of formation + Delta-G solvation = 7.991490 kcal Electronic energy + Delta-G solvation = -27015.170000 eV Core-core repulsion = 22812.913977 eV Total energy + Delta-G solvation = -4202.256024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.23004 -45.78632 -39.54199 -38.97973 -36.41797 -35.13955 -33.78723 -33.45381 -31.99242 -30.95479 -30.50240 -28.10929 -27.35324 -25.15716 -23.96904 -23.32281 -22.79536 -22.23785 -21.23346 -19.66196 -18.28979 -18.05057 -17.63044 -16.86178 -16.47375 -16.24820 -16.21480 -16.01699 -15.25967 -14.90698 -14.76569 -14.66774 -14.39503 -14.01399 -13.95865 -13.62026 -13.09426 -12.97694 -12.87826 -12.61281 -12.55036 -12.25499 -12.11554 -11.80187 -11.52360 -11.41816 -11.22678 -11.02695 -10.77648 -10.71861 -10.30526 -10.25225 -9.99102 -9.46858 -9.11357 -9.02462 -8.76202 -8.72789 -8.36932 -6.05164 -4.08852 0.62355 0.75682 0.89973 1.96317 2.56561 3.04455 3.35827 3.38548 3.41285 3.44223 3.58019 3.76688 3.82287 3.87488 4.15937 4.28766 4.45899 4.49396 4.65082 4.79480 4.85615 5.07345 5.10172 5.27556 5.29214 5.35687 5.44549 5.57098 5.61182 5.68229 5.76567 5.86852 5.94905 6.10476 6.42730 6.58140 6.70693 6.79013 6.89292 7.42547 7.71389 7.89928 7.95909 8.05848 8.32069 8.99030 9.05615 9.56671 11.02325 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.002033 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.024010 B =13768.693169 C =14112.922265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.539 6.539 14 N -0.744 5.744 15 C 0.215 3.785 16 C 0.176 3.824 17 N -0.461 5.461 18 C 0.168 3.832 19 C 0.014 3.986 20 C -0.124 4.124 21 C -0.072 4.072 22 C -0.131 4.131 23 C -0.088 4.088 24 C -0.157 4.157 25 C 0.110 3.890 26 F -0.132 7.132 27 N -0.371 5.371 28 O 0.089 5.911 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.401 0.599 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 3.462 -26.880 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.413 6.413 14 N -0.402 5.402 15 C 0.089 3.911 16 C -0.045 4.045 17 N -0.196 5.196 18 C -0.104 4.104 19 C -0.025 4.025 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.149 4.149 23 C -0.106 4.106 24 C -0.176 4.176 25 C 0.091 3.909 26 F -0.110 7.110 27 N -0.076 5.076 28 O 0.028 5.972 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.067 3.164 -27.298 27.651 hybrid contribution -0.274 -0.157 0.750 0.814 sum 2.794 3.007 -26.548 26.863 Atomic orbital electron populations 1.21765 0.96366 1.00008 1.01046 1.18894 0.94251 0.96941 0.88777 0.92721 1.21084 1.31248 1.12921 0.88869 0.90712 1.24956 0.95073 0.95057 0.99160 1.69861 1.36893 1.23030 1.23731 0.86482 0.79274 0.79700 0.81540 1.20162 1.21412 1.20168 1.22111 0.78218 0.84236 0.83720 1.90559 1.37693 1.26697 1.86368 1.46343 1.56251 1.33137 1.04444 1.19580 1.00311 0.95002 0.76217 1.28899 0.83914 0.93820 0.97902 1.71923 1.28777 1.12593 1.06265 1.25533 0.88099 0.99914 0.96900 1.18757 1.02351 0.92793 0.88555 1.19645 0.94740 1.02591 0.95657 1.21057 0.92140 0.97735 0.98107 1.21253 1.00642 0.98765 0.94261 1.21090 0.93152 0.97552 0.98781 1.21175 0.95302 1.02657 0.98473 1.17623 0.77353 0.99882 0.96036 1.91540 1.28982 1.94098 1.96376 1.74707 1.22583 1.05303 1.04985 1.85355 1.37226 1.45484 1.29154 0.94779 0.88718 0.96937 0.92849 0.76489 0.88114 0.87240 0.87755 0.86868 0.84401 0.84960 0.84862 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -13.85 8.37 -34.44 -0.29 -14.14 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.53 11.26 7.15 -10.99 -0.08 11.18 16 13 O -0.54 -13.08 15.46 5.55 0.09 -12.99 16 14 N -0.74 -12.07 5.44 -61.47 -0.33 -12.40 16 15 C 0.21 2.88 6.30 -5.19 -0.03 2.85 16 16 C 0.18 2.30 7.88 -13.06 -0.10 2.19 16 17 N -0.46 -6.16 11.55 -9.87 -0.11 -6.27 16 18 C 0.17 2.13 7.45 -156.37 -1.17 0.96 16 19 C 0.01 0.13 5.75 -29.04 -0.17 -0.03 16 20 C -0.12 -1.16 5.12 -104.56 -0.54 -1.70 16 21 C -0.07 -0.56 9.68 -39.60 -0.38 -0.95 16 22 C -0.13 -0.86 10.04 -39.58 -0.40 -1.26 16 23 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 24 C -0.16 -1.24 10.03 -39.52 -0.40 -1.64 16 25 C 0.11 1.10 7.24 -39.42 -0.29 0.81 16 26 F -0.13 -1.52 16.57 2.25 0.04 -1.48 16 27 N -0.37 -5.19 12.16 30.90 0.38 -4.81 16 28 O 0.09 1.21 11.31 18.11 0.20 1.42 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 31 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.40 5.92 7.88 -40.82 -0.32 5.60 16 34 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.10 0.92 7.79 -51.93 -0.40 0.52 16 37 H 0.11 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -31.97 363.75 -7.62 -39.59 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.72 Total: 2.41 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.24 Total: -3.30 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.55 Total: -47.57 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.29 Total: -11.57 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.97 -7.62 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771900648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.585 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds