Wall clock time and date at job start Tue Mar 31 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.46500 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46995 * 179.97438 * 15 14 12 17 17 N 1.31136 * 126.54823 * 90.00132 * 16 15 14 18 18 C 1.34499 * 105.61070 * 180.02562 * 17 16 15 19 19 C 1.50697 * 126.28506 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47394 * 89.99556 * 19 18 17 21 21 C 1.38221 * 120.01720 * 264.72625 * 20 19 18 22 22 C 1.38220 * 120.02891 * 179.72068 * 21 20 19 23 23 C 1.38270 * 120.05011 * 0.55154 * 22 21 20 24 24 C 1.38180 * 120.02399 * 359.72500 * 23 22 21 25 25 C 1.38441 * 120.01130 * 85.00065 * 20 19 18 26 26 F 1.35100 * 120.02678 * 359.97438 * 25 20 19 27 27 N 1.29945 * 107.42732 * 359.97438 * 18 17 16 28 28 O 1.21298 * 110.25030 * 359.70415 * 27 18 17 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 34 34 H 1.09001 * 109.47049 * 299.99628 * 15 14 12 35 35 H 1.09000 * 109.47381 * 59.99594 * 15 14 12 36 36 H 1.09001 * 109.47504 * 209.99568 * 19 18 17 37 37 H 1.09008 * 109.47336 * 329.99673 * 19 18 17 38 38 H 1.08002 * 119.98383 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.97798 * 180.30032 * 22 21 20 40 40 H 1.08001 * 119.99044 * 179.74403 * 23 22 21 41 41 H 1.08001 * 120.01043 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 6 1.6936 -0.2298 4.8811 17 7 0.5734 -0.4699 5.5192 18 6 0.5471 0.4004 6.5443 19 6 -0.5414 0.5272 7.5788 20 6 -0.2345 -0.3772 8.7444 21 6 -0.7890 -1.6420 8.8030 22 6 -0.5031 -2.4739 9.8691 23 6 0.3287 -2.0379 10.8840 24 6 0.8796 -0.7718 10.8305 25 6 0.5984 0.0604 9.7600 26 9 1.1369 1.2983 9.7064 27 7 1.6326 1.1117 6.4790 28 8 2.3078 0.7614 5.5341 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 1.1493 0.5387 2.5435 34 1 1.8328 -1.9682 3.6508 35 1 3.2856 -0.9399 3.6505 36 1 -0.5957 1.5595 7.9244 37 1 -1.4965 0.2408 7.1383 38 1 -1.4426 -1.9819 8.0132 39 1 -0.9329 -3.4637 9.9116 40 1 0.5481 -2.6872 11.7186 41 1 1.5289 -0.4313 11.6235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771900651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:56 Heat of formation + Delta-G solvation = 8.008857 kcal Electronic energy + Delta-G solvation = -27029.608392 eV Core-core repulsion = 22827.353121 eV Total energy + Delta-G solvation = -4202.255270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.23116 -45.78617 -39.54085 -38.97989 -36.41693 -35.13940 -33.78741 -33.45319 -31.99310 -30.95399 -30.50255 -28.10847 -27.35282 -25.15594 -23.97272 -23.32159 -22.79186 -22.23425 -21.23554 -19.66331 -18.28996 -18.05338 -17.63354 -16.85945 -16.47917 -16.23968 -16.19122 -16.01384 -15.25502 -14.93692 -14.81115 -14.66679 -14.42099 -13.96148 -13.90157 -13.57423 -13.24681 -12.91931 -12.88559 -12.62301 -12.50408 -12.26835 -12.11285 -11.80109 -11.52614 -11.41503 -11.22499 -11.02612 -10.77560 -10.71666 -10.30572 -10.25076 -9.99117 -9.46791 -9.11304 -9.02410 -8.76362 -8.72614 -8.36926 -6.05112 -4.08848 0.62393 0.75720 0.90003 1.96469 2.56457 3.04534 3.35833 3.38560 3.41627 3.44170 3.57771 3.76558 3.82459 3.87648 4.16010 4.28841 4.45908 4.49456 4.65158 4.79547 4.85671 5.07409 5.10332 5.27923 5.28822 5.35773 5.44646 5.57159 5.61265 5.68266 5.76724 5.86929 5.94977 6.10484 6.42790 6.58423 6.70789 6.79360 6.89467 7.42560 7.71323 7.89927 7.95962 8.05805 8.32057 8.99013 9.05605 9.56702 11.02398 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002029 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.458939 B =13795.043925 C =13976.271998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.539 6.539 14 N -0.744 5.744 15 C 0.215 3.785 16 C 0.176 3.824 17 N -0.461 5.461 18 C 0.168 3.832 19 C 0.014 3.986 20 C -0.124 4.124 21 C -0.072 4.072 22 C -0.131 4.131 23 C -0.088 4.088 24 C -0.157 4.157 25 C 0.110 3.890 26 F -0.132 7.132 27 N -0.371 5.371 28 O 0.088 5.912 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.401 0.599 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 -1.936 26.883 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.413 6.413 14 N -0.402 5.402 15 C 0.089 3.911 16 C -0.045 4.045 17 N -0.195 5.195 18 C -0.104 4.104 19 C -0.025 4.025 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.149 4.149 23 C -0.106 4.106 24 C -0.176 4.176 25 C 0.091 3.909 26 F -0.110 7.110 27 N -0.076 5.076 28 O 0.028 5.972 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.341 -2.068 27.300 27.720 hybrid contribution 0.227 0.195 -0.749 0.807 sum -4.114 -1.873 26.550 26.932 Atomic orbital electron populations 1.21759 0.96360 0.99988 1.01018 1.18893 0.94256 0.96945 0.88777 0.92708 1.21084 1.31239 1.12929 0.88869 0.90713 1.24952 0.95069 0.95058 0.99157 1.69855 1.36934 1.22993 1.23740 0.86484 0.79282 0.79693 0.81545 1.20169 1.21411 1.20161 1.22112 0.78207 0.84249 0.83719 1.90559 1.37718 1.26670 1.86368 1.46343 1.56252 1.33138 1.04443 1.19576 1.00348 0.94961 0.76219 1.28900 0.88259 0.89537 0.97852 1.71929 1.18028 1.23344 1.06213 1.25532 0.96220 0.91748 0.96940 1.18755 0.94365 1.00785 0.88555 1.19645 1.00540 0.96796 0.95650 1.21060 0.98206 0.91670 0.98104 1.21253 0.99073 1.00338 0.94255 1.21090 0.95811 0.94889 0.98785 1.21176 1.03039 0.94932 0.98461 1.17623 0.96065 0.81177 0.96030 1.91538 1.83995 1.39088 1.96375 1.74703 1.06337 1.21385 1.05159 1.85353 1.41494 1.41086 1.29312 0.96940 0.94815 0.88736 0.92845 0.76490 0.87262 0.88098 0.87755 0.86871 0.84402 0.84961 0.84863 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -13.85 8.37 -34.44 -0.29 -14.14 16 5 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.53 11.25 7.15 -10.99 -0.08 11.18 16 13 O -0.54 -13.07 15.46 5.55 0.09 -12.99 16 14 N -0.74 -12.06 5.44 -61.47 -0.33 -12.40 16 15 C 0.21 2.88 6.30 -5.20 -0.03 2.85 16 16 C 0.18 2.29 7.88 -13.05 -0.10 2.19 16 17 N -0.46 -6.16 11.55 -9.87 -0.11 -6.28 16 18 C 0.17 2.13 7.45 -156.37 -1.17 0.96 16 19 C 0.01 0.13 5.75 -29.04 -0.17 -0.03 16 20 C -0.12 -1.16 5.12 -104.56 -0.54 -1.70 16 21 C -0.07 -0.56 9.68 -39.59 -0.38 -0.95 16 22 C -0.13 -0.86 10.04 -39.58 -0.40 -1.26 16 23 C -0.09 -0.56 10.04 -39.59 -0.40 -0.96 16 24 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 25 C 0.11 1.10 7.24 -39.42 -0.29 0.81 16 26 F -0.13 -1.52 16.57 2.25 0.04 -1.48 16 27 N -0.37 -5.18 12.16 30.90 0.38 -4.80 16 28 O 0.09 1.20 11.31 18.10 0.20 1.41 16 29 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.40 5.92 7.88 -40.82 -0.32 5.59 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 0.92 7.79 -51.93 -0.40 0.52 16 37 H 0.11 0.85 8.05 -51.92 -0.42 0.43 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -31.98 363.75 -7.62 -39.60 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.72 Total: 2.41 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.24 Total: -3.30 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.55 Total: -47.57 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.29 Total: -11.58 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.98 -7.62 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771900651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.605 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds