Wall clock time and date at job start Tue Mar 31 2020 18:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.46500 * 120.00084 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46995 * 179.97438 * 15 14 12 17 17 N 1.31136 * 126.54823 * 90.00132 * 16 15 14 18 18 C 1.34499 * 105.61070 * 180.02562 * 17 16 15 19 19 C 1.50697 * 126.28506 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47394 * 89.99556 * 19 18 17 21 21 C 1.38221 * 120.01720 * 264.72625 * 20 19 18 22 22 C 1.38220 * 120.02891 * 179.72068 * 21 20 19 23 23 C 1.38270 * 120.05011 * 0.55154 * 22 21 20 24 24 C 1.38180 * 120.02399 * 359.72500 * 23 22 21 25 25 C 1.38441 * 120.01130 * 85.00065 * 20 19 18 26 26 F 1.35100 * 120.02678 * 359.97438 * 25 20 19 27 27 N 1.29945 * 107.42732 * 359.97438 * 18 17 16 28 28 O 1.21298 * 110.25030 * 359.70415 * 27 18 17 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 34 34 H 1.09001 * 109.47049 * 299.99628 * 15 14 12 35 35 H 1.09000 * 109.47381 * 59.99594 * 15 14 12 36 36 H 1.09001 * 109.47504 * 209.99568 * 19 18 17 37 37 H 1.09008 * 109.47336 * 329.99673 * 19 18 17 38 38 H 1.08002 * 119.98383 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.97798 * 180.30032 * 22 21 20 40 40 H 1.08001 * 119.99044 * 179.74403 * 23 22 21 41 41 H 1.08001 * 120.01043 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 6 1.6936 -0.2298 4.8811 17 7 0.5734 -0.4699 5.5192 18 6 0.5471 0.4004 6.5443 19 6 -0.5414 0.5272 7.5788 20 6 -0.2345 -0.3772 8.7444 21 6 -0.7890 -1.6420 8.8030 22 6 -0.5031 -2.4739 9.8691 23 6 0.3287 -2.0379 10.8840 24 6 0.8796 -0.7718 10.8305 25 6 0.5984 0.0604 9.7600 26 9 1.1369 1.2983 9.7064 27 7 1.6326 1.1117 6.4790 28 8 2.3078 0.7614 5.5341 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 0.7093 1.1619 -3.4844 33 1 1.1493 0.5387 2.5435 34 1 1.8328 -1.9682 3.6508 35 1 3.2856 -0.9399 3.6505 36 1 -0.5957 1.5595 7.9244 37 1 -1.4965 0.2408 7.1383 38 1 -1.4426 -1.9819 8.0132 39 1 -0.9329 -3.4637 9.9116 40 1 0.5481 -2.6872 11.7186 41 1 1.5289 -0.4313 11.6235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771900651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:55 Heat of formation + Delta-G solvation = -12.735753 kcal Electronic energy + Delta-G solvation = -27030.507945 eV Core-core repulsion = 22827.353121 eV Total energy + Delta-G solvation = -4203.154824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.98374 -46.82534 -40.63437 -40.11679 -37.40326 -36.43270 -35.74453 -34.42910 -33.08638 -32.31906 -31.51126 -28.87199 -28.60147 -27.15506 -25.01233 -24.35116 -23.85828 -23.24258 -22.11006 -21.27453 -19.35211 -18.98134 -18.51988 -18.30678 -17.90251 -17.38303 -16.93194 -16.80085 -16.76753 -16.45127 -16.27967 -15.63799 -15.22740 -15.11816 -14.79726 -14.61436 -14.54782 -14.33790 -14.03087 -13.71407 -13.43529 -13.25587 -13.19644 -12.95074 -12.93886 -12.68831 -12.57827 -12.51167 -12.25395 -12.17575 -12.06817 -11.98387 -11.29320 -11.02238 -10.60104 -10.33289 -10.18362 -10.03913 -9.72258 -8.12020 -6.22287 -0.19071 0.06022 0.18779 0.96743 1.45333 1.46445 1.48829 1.55118 1.87162 2.27435 2.40358 2.53726 2.63522 2.91148 3.18255 3.23232 3.51677 3.61802 3.77403 4.00598 4.15712 4.19532 4.27017 4.32034 4.37383 4.51129 4.54290 4.59561 4.74279 4.77845 4.89475 4.96216 5.04018 5.04892 5.13831 5.30143 5.32132 5.41833 5.51814 5.77177 5.87936 5.94635 6.21499 6.58658 6.86781 6.94059 7.37086 7.48372 8.93529 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.028727 B = 0.002029 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.458939 B =13795.043925 C =13976.271998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.025 3.975 3 H 0.044 0.956 4 C -0.527 4.527 5 H 0.054 0.946 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.534 3.466 13 O -0.572 6.572 14 N -0.726 5.726 15 C 0.219 3.781 16 C 0.180 3.820 17 N -0.466 5.466 18 C 0.173 3.827 19 C 0.013 3.987 20 C -0.138 4.138 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.085 4.085 24 C -0.164 4.164 25 C 0.081 3.919 26 F -0.149 7.149 27 N -0.390 5.390 28 O 0.083 5.917 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.410 0.590 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 -3.019 28.228 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.004 3.996 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.324 3.676 13 O -0.450 6.450 14 N -0.382 5.382 15 C 0.094 3.906 16 C -0.041 4.041 17 N -0.201 5.201 18 C -0.100 4.100 19 C -0.025 4.025 20 C -0.140 4.140 21 C -0.098 4.098 22 C -0.147 4.147 23 C -0.102 4.102 24 C -0.183 4.183 25 C 0.061 3.939 26 F -0.128 7.128 27 N -0.097 5.097 28 O 0.024 5.976 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.075 -3.122 28.676 29.288 hybrid contribution 0.422 0.519 -1.045 1.241 sum -4.653 -2.603 27.631 28.141 Atomic orbital electron populations 1.21570 0.95115 0.99640 1.01561 1.18821 0.95278 0.96165 0.89356 0.93803 1.21267 1.31576 1.12817 0.90840 0.92775 1.25604 0.95248 0.95756 1.01510 1.69944 1.37247 1.23608 1.24328 0.85645 0.78685 0.78735 0.78778 1.20049 1.20381 1.20107 1.21451 0.77985 0.83635 0.84558 1.90543 1.39321 1.28052 1.87072 1.45940 1.55240 1.32981 1.04040 1.19643 1.01164 0.94814 0.74929 1.28716 0.88251 0.89475 0.97690 1.71948 1.18039 1.23601 1.06510 1.26071 0.96285 0.90766 0.96891 1.18932 0.94193 1.01251 0.88173 1.19707 1.01248 0.97516 0.95488 1.21304 0.98266 0.91204 0.98986 1.21632 0.98371 1.01175 0.93495 1.21478 0.94798 0.94460 0.99492 1.21445 1.03264 0.95392 0.98213 1.17988 0.97316 0.81130 0.97430 1.91486 1.84459 1.40244 1.96575 1.74718 1.07096 1.22256 1.05601 1.85342 1.41652 1.41197 1.29413 0.93353 0.95463 0.91152 0.92683 0.75390 0.86529 0.86705 0.87627 0.84919 0.83195 0.82364 0.81964 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.87 71.98 0.64 -4.68 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.17 16 3 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.53 -29.39 8.37 25.60 0.21 -29.18 16 5 H 0.05 3.19 6.75 -2.91 -0.02 3.18 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -50.40 11.32 21.45 0.24 -50.16 16 8 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.53 22.58 7.15 87.66 0.63 23.21 16 13 O -0.57 -27.77 15.46 -3.04 -0.05 -27.82 16 14 N -0.73 -22.54 5.44 -466.79 -2.54 -25.08 16 15 C 0.22 5.54 6.30 85.63 0.54 6.08 16 16 C 0.18 4.45 7.88 88.38 0.70 5.14 16 17 N -0.47 -11.75 11.55 -303.21 -3.50 -15.25 16 18 C 0.17 4.19 7.45 138.46 1.03 5.22 16 19 C 0.01 0.23 5.75 29.10 0.17 0.40 16 20 C -0.14 -2.44 5.12 -19.82 -0.10 -2.54 16 21 C -0.08 -1.08 9.68 22.26 0.22 -0.87 16 22 C -0.13 -1.33 10.04 22.27 0.22 -1.11 16 23 C -0.08 -0.86 10.04 22.26 0.22 -0.64 16 24 C -0.16 -2.39 10.03 22.31 0.22 -2.17 16 25 C 0.08 1.57 7.24 22.38 0.16 1.73 16 26 F -0.15 -3.51 16.57 44.97 0.75 -2.76 16 27 N -0.39 -10.68 12.16 -60.33 -0.73 -11.42 16 28 O 0.08 2.19 11.31 74.82 0.85 3.03 16 29 H 0.05 1.73 7.56 -2.39 -0.02 1.71 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 3.47 6.07 -2.38 -0.01 3.45 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.41 11.38 7.88 -92.71 -0.73 10.65 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.11 1.84 7.79 -2.39 -0.02 1.82 16 37 H 0.13 1.78 8.05 -2.38 -0.02 1.76 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -69.03 363.75 2.67 -66.36 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.36 Total: 13.85 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.28 Total: 3.20 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.53 Total: -101.91 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.80 Total: -24.79 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.75 Total: -2.76 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.03 2.67 -66.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771900651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.625 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds