Wall clock time and date at job start Tue Mar 31 2020 18:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.47223 * 2 1 4 4 N 1.46905 * 109.47173 * 240.00068 * 2 1 3 5 5 C 1.46901 * 110.99741 * 84.99591 * 4 2 1 6 6 C 1.52999 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47543 * 305.00561 * 6 5 4 8 8 O 1.42898 * 109.47149 * 65.00019 * 6 5 4 9 9 C 1.52993 * 109.47473 * 185.00267 * 6 5 4 10 10 O 1.42899 * 109.47626 * 175.00251 * 9 6 5 11 11 C 1.35672 * 117.00494 * 180.02562 * 10 9 6 12 12 C 1.39311 * 119.81787 * 179.97438 * 11 10 9 13 13 C 1.36444 * 120.18284 * 180.27547 * 12 11 10 14 14 C 1.40831 * 119.80941 * 359.50037 * 13 12 11 15 15 C 1.41217 * 120.17754 * 180.22537 * 14 13 12 16 16 H 1.08003 * 120.00517 * 204.70445 * 15 14 13 17 17 C 1.39895 * 119.99935 * 24.71470 * 15 14 13 18 18 N 1.30879 * 120.00135 * 17.78648 * 17 15 14 19 19 Si 1.86799 * 119.99868 * 197.79097 * 17 15 14 20 20 H 1.48499 * 109.47287 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46896 * 119.99819 * 19 17 15 22 22 H 1.48501 * 109.46845 * 239.99449 * 19 17 15 23 23 C 1.40831 * 119.64514 * 0.50352 * 14 13 12 24 24 C 1.36435 * 119.81054 * 359.74684 * 23 14 13 25 25 C 1.52996 * 109.47423 * 120.00093 * 2 1 3 26 26 F 1.39901 * 109.47233 * 179.97438 * 25 2 1 27 27 F 1.39906 * 109.46919 * 299.99884 * 25 2 1 28 28 F 1.39897 * 109.47284 * 60.00058 * 25 2 1 29 29 H 1.09005 * 109.46909 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47156 * 59.99553 * 1 2 3 31 31 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.00900 * 110.99778 * 321.04821 * 4 2 1 33 33 H 1.08998 * 109.47210 * 60.00824 * 5 4 2 34 34 H 1.08997 * 109.47619 * 300.00530 * 5 4 2 35 35 H 0.96702 * 113.99634 * 60.00268 * 8 6 5 36 36 H 1.08997 * 109.47362 * 55.00222 * 9 6 5 37 37 H 1.09001 * 109.47329 * 294.99817 * 9 6 5 38 38 H 1.07997 * 119.91292 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.09288 * 179.72467 * 13 12 11 40 40 H 0.97001 * 120.00430 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.09616 * 179.73126 * 23 14 13 42 42 H 1.07993 * 119.91274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.5949 -0.5331 -3.5745 7 1 3.5506 -1.0020 -3.3398 8 8 1.6492 -1.5386 -3.9441 9 6 2.7788 0.4456 -4.7360 10 8 3.3665 -0.2367 -5.8455 11 6 3.5986 0.4937 -6.9651 12 6 4.1702 -0.1126 -8.0815 13 6 4.4121 0.6161 -9.2094 14 6 4.0725 1.9824 -9.2464 15 6 4.3150 2.7428 -10.4114 16 1 4.4414 3.8131 -10.3411 17 6 4.3914 2.1098 -11.6566 18 7 3.9062 0.9038 -11.8084 19 14 5.1859 2.9859 -13.1025 20 1 5.6515 4.3288 -12.6725 21 1 6.3435 2.1918 -13.5869 22 1 4.1939 3.1335 -14.1976 23 6 3.4952 2.5876 -8.1134 24 6 3.2646 1.8460 -6.9916 25 6 2.0400 -0.7212 1.2492 26 9 3.4390 -0.7217 1.2488 27 9 1.5737 -0.0617 2.3915 28 9 1.5738 -2.0402 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 -1.4101 33 1 2.7588 1.0462 -2.1183 34 1 1.0870 0.6164 -2.5525 35 1 0.7741 -1.1925 -4.1669 36 1 3.4312 1.2612 -4.4241 37 1 1.8091 0.8479 -5.0292 38 1 4.4263 -1.1614 -8.0529 39 1 4.8593 0.1456 -10.0725 40 1 3.9595 0.4647 -12.6717 41 1 3.2360 3.6358 -8.1323 42 1 2.8224 2.3085 -6.1217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772047732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:59 Heat of formation + Delta-G solvation = -230.154817 kcal Electronic energy + Delta-G solvation = -27788.817939 eV Core-core repulsion = 23125.545930 eV Total energy + Delta-G solvation = -4663.272009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.32838 -47.87330 -47.75795 -39.27477 -38.25824 -36.75871 -35.93532 -33.34739 -32.05585 -30.11301 -29.30436 -28.81973 -26.86982 -25.33027 -24.40489 -22.16665 -22.07285 -20.74256 -20.61517 -18.79734 -18.66896 -18.06298 -17.39571 -17.12327 -16.56979 -16.46570 -15.59864 -15.41562 -15.17430 -14.67539 -14.63960 -14.27642 -14.24499 -14.10007 -13.98340 -13.96169 -13.93409 -13.66845 -13.45048 -13.40818 -12.88144 -12.39992 -12.34888 -12.29551 -12.17320 -11.82810 -11.79464 -11.43377 -11.19317 -11.03907 -10.85016 -10.63910 -10.15843 -10.00827 -9.84164 -9.36919 -9.15642 -9.05215 -7.67519 -7.06253 -6.74865 -4.28259 2.36215 2.74501 2.91961 3.07395 3.11228 3.12415 3.18185 3.48170 3.66646 3.87239 3.93541 4.18385 4.29190 4.41354 4.47404 4.59121 4.72324 4.77653 4.96172 4.99745 5.06394 5.23459 5.26071 5.43616 5.54000 5.64310 5.91192 6.01396 6.17026 6.19687 6.69147 6.71006 6.94693 7.08146 7.15717 7.42419 7.51009 7.53657 7.75556 7.98156 8.17630 8.41804 8.62497 8.87396 8.95762 10.19596 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.001755 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.474805 B =15950.434009 C =16117.717538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 H 0.121 0.879 4 N -0.673 5.673 5 C 0.034 3.966 6 C 0.111 3.889 7 H 0.118 0.882 8 O -0.549 6.549 9 C 0.040 3.960 10 O -0.316 6.316 11 C -0.010 4.010 12 C -0.118 4.118 13 C -0.133 4.133 14 C 0.088 3.912 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.199 4.199 24 C -0.168 4.168 25 C 0.460 3.540 26 F -0.174 7.174 27 F -0.186 7.186 28 F -0.182 7.182 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.362 0.638 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.370 0.630 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.280 0.720 41 H 0.094 0.906 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 -1.279 21.099 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 H 0.139 0.861 4 N -0.306 5.306 5 C -0.095 4.095 6 C 0.052 3.948 7 H 0.136 0.864 8 O -0.354 6.354 9 C -0.037 4.037 10 O -0.232 6.232 11 C -0.053 4.053 12 C -0.137 4.137 13 C -0.153 4.153 14 C 0.086 3.914 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.732 3.268 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.219 4.219 24 C -0.186 4.186 25 C 0.405 3.595 26 F -0.155 7.155 27 F -0.168 7.168 28 F -0.164 7.164 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.217 0.783 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.737 -1.990 21.225 22.077 hybrid contribution -1.124 1.066 -0.746 1.719 sum -6.861 -0.924 20.480 21.618 Atomic orbital electron populations 1.22525 0.93477 1.04299 1.04510 1.22648 0.96003 0.99412 0.89008 0.86101 1.60151 1.57699 1.10046 1.02702 1.22625 1.00930 0.95640 0.90295 1.21956 0.94226 0.88964 0.89698 0.86442 1.86673 1.24043 1.34930 1.89718 1.23046 0.98089 0.95137 0.87476 1.85886 1.78767 1.37641 1.20915 1.18608 1.09149 0.90480 0.87090 1.19849 1.03160 0.98622 0.92069 1.20989 1.02816 0.95092 0.96383 1.17606 0.89398 0.92273 0.92151 1.19494 1.43596 0.95366 0.90814 0.90512 1.25891 0.93053 0.94820 1.00505 1.69838 1.33324 1.13498 1.25744 0.86284 0.79583 0.80600 0.80371 1.18482 1.19713 1.20084 1.20555 1.07549 0.98690 0.95127 1.20377 1.06284 0.93266 0.98721 1.20496 0.76029 0.77663 0.85313 1.93208 1.29337 1.96307 1.96682 1.93173 1.88621 1.80903 1.54092 1.93167 1.88448 1.38002 1.96760 0.90432 0.90248 0.90731 0.81696 0.89119 0.93730 0.78304 0.92246 0.92985 0.88396 0.85652 0.90933 0.88769 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.92 8.92 37.16 0.33 -0.59 16 2 C 0.04 0.27 2.56 -67.71 -0.17 0.10 16 3 H 0.12 0.65 7.80 -51.92 -0.40 0.24 16 4 N -0.67 -5.28 6.10 -106.72 -0.65 -5.93 16 5 C 0.03 0.26 5.16 -3.82 -0.02 0.24 16 6 C 0.11 1.24 3.49 -26.74 -0.09 1.14 16 7 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 8 O -0.55 -6.46 12.82 -40.09 -0.51 -6.98 16 9 C 0.04 0.56 4.36 37.15 0.16 0.72 16 10 O -0.32 -6.28 10.09 -23.57 -0.24 -6.52 16 11 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 12 C -0.12 -2.85 9.92 -39.83 -0.40 -3.25 16 13 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 14 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 15 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 16 16 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 17 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.80 -20.54 10.96 55.55 0.61 -19.93 16 19 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 24 C -0.17 -3.68 8.96 -39.83 -0.36 -4.04 16 25 C 0.46 3.92 2.82 37.16 0.10 4.03 16 26 F -0.17 -1.82 17.24 2.25 0.04 -1.78 16 27 F -0.19 -1.58 16.80 2.25 0.04 -1.54 16 28 F -0.18 -1.73 16.72 2.25 0.04 -1.69 16 29 H 0.08 0.34 7.80 -51.93 -0.41 -0.06 16 30 H 0.08 0.33 7.45 -51.93 -0.39 -0.06 16 31 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 32 H 0.36 2.85 8.03 -39.29 -0.32 2.53 16 33 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 34 H 0.04 0.27 7.44 -51.93 -0.39 -0.12 16 35 H 0.37 3.06 9.05 45.56 0.41 3.47 16 36 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 37 H 0.05 0.69 7.65 -51.93 -0.40 0.29 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 41 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -29.84 364.28 -7.24 -37.08 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.57 Total: 8.46 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.45 Total: -20.16 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.86 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.75 Total: -13.49 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.84 -7.24 -37.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772047732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.070 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds