Wall clock time and date at job start Tue Mar 31 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.47223 * 2 1 4 4 N 1.46905 * 109.47173 * 240.00068 * 2 1 3 5 5 C 1.46901 * 110.99741 * 84.99591 * 4 2 1 6 6 C 1.52999 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.09007 * 109.47543 * 305.00561 * 6 5 4 8 8 O 1.42898 * 109.47149 * 65.00019 * 6 5 4 9 9 C 1.52993 * 109.47473 * 185.00267 * 6 5 4 10 10 O 1.42899 * 109.47626 * 175.00251 * 9 6 5 11 11 C 1.35672 * 117.00494 * 180.02562 * 10 9 6 12 12 C 1.39311 * 119.81787 * 179.97438 * 11 10 9 13 13 C 1.36444 * 120.18284 * 180.27547 * 12 11 10 14 14 C 1.40831 * 119.80941 * 359.50037 * 13 12 11 15 15 C 1.41217 * 120.17754 * 180.22537 * 14 13 12 16 16 H 1.08003 * 120.00517 * 204.70445 * 15 14 13 17 17 C 1.39895 * 119.99935 * 24.71470 * 15 14 13 18 18 N 1.30879 * 120.00135 * 17.78648 * 17 15 14 19 19 Si 1.86799 * 119.99868 * 197.79097 * 17 15 14 20 20 H 1.48499 * 109.47287 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46896 * 119.99819 * 19 17 15 22 22 H 1.48501 * 109.46845 * 239.99449 * 19 17 15 23 23 C 1.40831 * 119.64514 * 0.50352 * 14 13 12 24 24 C 1.36435 * 119.81054 * 359.74684 * 23 14 13 25 25 C 1.52996 * 109.47423 * 120.00093 * 2 1 3 26 26 F 1.39901 * 109.47233 * 179.97438 * 25 2 1 27 27 F 1.39906 * 109.46919 * 299.99884 * 25 2 1 28 28 F 1.39897 * 109.47284 * 60.00058 * 25 2 1 29 29 H 1.09005 * 109.46909 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47156 * 59.99553 * 1 2 3 31 31 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 32 32 H 1.00900 * 110.99778 * 321.04821 * 4 2 1 33 33 H 1.08998 * 109.47210 * 60.00824 * 5 4 2 34 34 H 1.08997 * 109.47619 * 300.00530 * 5 4 2 35 35 H 0.96702 * 113.99634 * 60.00268 * 8 6 5 36 36 H 1.08997 * 109.47362 * 55.00222 * 9 6 5 37 37 H 1.09001 * 109.47329 * 294.99817 * 9 6 5 38 38 H 1.07997 * 119.91292 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.09288 * 179.72467 * 13 12 11 40 40 H 0.97001 * 120.00430 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.09616 * 179.73126 * 23 14 13 42 42 H 1.07993 * 119.91274 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0823 0.2226 -2.3469 6 6 2.5949 -0.5331 -3.5745 7 1 3.5506 -1.0020 -3.3398 8 8 1.6492 -1.5386 -3.9441 9 6 2.7788 0.4456 -4.7360 10 8 3.3665 -0.2367 -5.8455 11 6 3.5986 0.4937 -6.9651 12 6 4.1702 -0.1126 -8.0815 13 6 4.4121 0.6161 -9.2094 14 6 4.0725 1.9824 -9.2464 15 6 4.3150 2.7428 -10.4114 16 1 4.4414 3.8131 -10.3411 17 6 4.3914 2.1098 -11.6566 18 7 3.9062 0.9038 -11.8084 19 14 5.1859 2.9859 -13.1025 20 1 5.6515 4.3288 -12.6725 21 1 6.3435 2.1918 -13.5869 22 1 4.1939 3.1335 -14.1976 23 6 3.4952 2.5876 -8.1134 24 6 3.2646 1.8460 -6.9916 25 6 2.0400 -0.7212 1.2492 26 9 3.4390 -0.7217 1.2488 27 9 1.5737 -0.0617 2.3915 28 9 1.5738 -2.0402 1.2492 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.4495 -1.4979 -1.4101 33 1 2.7588 1.0462 -2.1183 34 1 1.0870 0.6164 -2.5525 35 1 0.7741 -1.1925 -4.1669 36 1 3.4312 1.2612 -4.4241 37 1 1.8091 0.8479 -5.0292 38 1 4.4263 -1.1614 -8.0529 39 1 4.8593 0.1456 -10.0725 40 1 3.9595 0.4647 -12.6717 41 1 3.2360 3.6358 -8.1323 42 1 2.8224 2.3085 -6.1217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772047732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:58 Heat of formation + Delta-G solvation = -250.286721 kcal Electronic energy + Delta-G solvation = -27789.690924 eV Core-core repulsion = 23125.545930 eV Total energy + Delta-G solvation = -4664.144994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -51.01386 -48.54881 -48.48643 -40.66467 -39.32696 -38.05624 -37.00884 -35.17435 -32.79330 -31.73354 -30.97317 -30.04873 -27.43595 -26.82045 -25.66664 -23.28946 -22.68007 -22.45951 -22.15021 -19.49322 -19.35186 -19.24586 -18.86950 -18.44508 -17.55816 -17.47458 -17.02959 -16.25372 -16.21216 -15.81303 -15.70116 -15.41513 -15.27314 -15.10160 -14.94667 -14.84062 -14.69530 -14.65531 -14.34066 -14.15600 -14.05036 -13.95168 -13.79838 -13.49631 -13.11888 -12.89496 -12.81582 -12.78237 -12.59805 -12.38191 -12.31349 -11.92424 -11.69981 -11.56702 -11.23444 -10.99909 -10.87127 -9.69401 -9.55302 -8.91428 -8.59168 -6.22196 0.95327 1.03503 1.40255 1.51329 1.55359 1.74741 2.22972 2.31676 2.72869 2.80663 2.94461 3.10056 3.47012 3.55057 3.71154 3.85992 3.96567 3.99740 4.02983 4.05535 4.30046 4.33843 4.37366 4.48835 4.58465 4.65128 4.69618 4.87633 5.03372 5.08496 5.11105 5.22845 5.29165 5.58073 5.62571 5.65698 5.89076 6.06814 6.13304 6.27163 6.57508 6.79497 6.84488 6.95801 7.11600 8.37423 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.001755 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.474805 B =15950.434009 C =16117.717538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.137 0.863 4 N -0.687 5.687 5 C 0.045 3.955 6 C 0.121 3.879 7 H 0.097 0.903 8 O -0.567 6.567 9 C 0.029 3.971 10 O -0.333 6.333 11 C 0.002 3.998 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.053 3.947 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.832 5.832 19 Si 0.982 3.018 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.208 4.208 24 C -0.163 4.163 25 C 0.454 3.546 26 F -0.189 7.189 27 F -0.187 7.187 28 F -0.191 7.191 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.361 0.639 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.386 0.614 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.107 0.893 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.935 -0.005 22.225 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.063 4.063 3 H 0.155 0.845 4 N -0.320 5.320 5 C -0.083 4.083 6 C 0.061 3.939 7 H 0.115 0.885 8 O -0.374 6.374 9 C -0.047 4.047 10 O -0.248 6.248 11 C -0.042 4.042 12 C -0.155 4.155 13 C -0.173 4.173 14 C 0.051 3.949 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.182 4.182 18 N -0.459 5.459 19 Si 0.803 3.197 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.227 4.227 24 C -0.182 4.182 25 C 0.399 3.601 26 F -0.170 7.170 27 F -0.168 7.168 28 F -0.172 7.172 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.766 -0.716 22.382 23.393 hybrid contribution -0.879 0.577 -0.874 1.367 sum -7.644 -0.139 21.508 22.826 Atomic orbital electron populations 1.22507 0.91990 1.04369 1.05453 1.22683 0.97009 0.99436 0.87193 0.84540 1.60059 1.58354 1.10405 1.03191 1.22495 1.02346 0.95030 0.88455 1.21822 0.93755 0.88365 0.89954 0.88505 1.86642 1.25147 1.35740 1.89904 1.23489 0.98664 0.96227 0.86323 1.85880 1.79078 1.38568 1.21312 1.18669 1.07161 0.90831 0.87523 1.20014 1.03839 0.99066 0.92575 1.20895 1.04209 0.95510 0.96692 1.17964 0.90700 0.92765 0.93451 1.19735 1.45642 0.95550 0.91851 0.90540 1.26749 0.92929 0.95522 1.02998 1.69896 1.34193 1.14949 1.26865 0.85165 0.78591 0.79315 0.76649 1.18096 1.19113 1.19196 1.20826 1.07111 0.99580 0.95212 1.20705 1.05292 0.92837 0.99332 1.20926 0.75373 0.77555 0.86236 1.93176 1.30680 1.96365 1.96794 1.93168 1.88518 1.80808 1.54355 1.93149 1.88448 1.38791 1.96837 0.89885 0.88855 0.91140 0.81821 0.88142 0.91191 0.76496 0.90935 0.91320 0.87738 0.87422 0.90262 0.87485 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 8.92 71.98 0.64 -0.62 16 2 C 0.05 0.51 2.56 44.91 0.12 0.62 16 3 H 0.14 1.01 7.80 -2.38 -0.02 0.99 16 4 N -0.69 -9.14 6.10 -491.56 -3.00 -12.14 16 5 C 0.05 0.54 5.16 86.30 0.44 0.98 16 6 C 0.12 2.40 3.49 30.59 0.11 2.51 16 7 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 8 O -0.57 -12.18 12.82 -144.34 -1.85 -14.03 16 9 C 0.03 0.73 4.36 71.98 0.31 1.05 16 10 O -0.33 -12.64 10.09 -85.25 -0.86 -13.50 16 11 C 0.00 0.09 6.71 22.79 0.15 0.24 16 12 C -0.14 -6.68 9.92 22.11 0.22 -6.46 16 13 C -0.15 -8.26 8.64 22.49 0.19 -8.06 16 14 C 0.05 2.88 5.57 -21.28 -0.12 2.77 16 15 C -0.50 -26.80 9.04 23.40 0.21 -26.59 16 16 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 17 C 0.03 1.61 5.14 85.24 0.44 2.05 16 18 N -0.83 -44.01 10.96 21.82 0.24 -43.77 16 19 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.21 -9.92 9.74 22.48 0.22 -9.70 16 24 C -0.16 -6.84 8.96 22.11 0.20 -6.64 16 25 C 0.45 7.12 2.82 71.98 0.20 7.32 16 26 F -0.19 -3.79 17.24 44.97 0.78 -3.01 16 27 F -0.19 -2.91 16.80 44.97 0.76 -2.16 16 28 F -0.19 -3.44 16.72 44.97 0.75 -2.69 16 29 H 0.08 0.50 7.80 -2.38 -0.02 0.48 16 30 H 0.09 0.41 7.45 -2.39 -0.02 0.39 16 31 H 0.07 0.56 7.79 -2.39 -0.02 0.54 16 32 H 0.36 4.95 8.03 -89.69 -0.72 4.23 16 33 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 34 H 0.07 0.51 7.44 -2.39 -0.02 0.50 16 35 H 0.39 5.33 9.05 -74.06 -0.67 4.66 16 36 H 0.07 1.66 7.64 -2.39 -0.02 1.65 16 37 H 0.07 1.53 7.65 -2.39 -0.02 1.51 16 38 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 40 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.13 4.39 6.27 -2.91 -0.02 4.37 16 Total: -1.00 -66.04 364.28 1.87 -64.17 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.31 Total: 27.33 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.34 Total: -40.53 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -2.76 Total: -55.91 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -2.71 Total: -27.54 kcal Atomic # 9 Polarization: -10.14 SS G_CDS: 2.28 Total: -7.86 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -66.04 1.87 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772047732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.118 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds