Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47345 * 2 1 4 4 N 1.46903 * 109.47265 * 240.00106 * 2 1 3 5 5 C 1.46893 * 111.00297 * 84.99829 * 4 2 1 6 6 C 1.53003 * 109.47506 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46630 * 59.99981 * 6 5 4 8 8 O 1.42902 * 109.47210 * 300.00598 * 6 5 4 9 9 C 1.52996 * 109.47342 * 179.97438 * 6 5 4 10 10 O 1.42905 * 109.46857 * 184.99926 * 9 6 5 11 11 C 1.35672 * 116.99443 * 179.97438 * 10 9 6 12 12 C 1.39320 * 119.81318 * 180.02562 * 11 10 9 13 13 C 1.36440 * 120.18380 * 180.25944 * 12 11 10 14 14 C 1.40837 * 119.80773 * 359.45756 * 13 12 11 15 15 C 1.41218 * 120.17528 * 180.25420 * 14 13 12 16 16 H 1.08003 * 119.99900 * 204.72191 * 15 14 13 17 17 C 1.39892 * 120.00136 * 24.72013 * 15 14 13 18 18 N 1.30882 * 119.99699 * 17.77743 * 17 15 14 19 19 Si 1.86795 * 120.00105 * 197.77306 * 17 15 14 20 20 H 1.48506 * 109.47332 * 90.00214 * 19 17 15 21 21 H 1.48504 * 109.47329 * 210.00225 * 19 17 15 22 22 H 1.48506 * 109.47349 * 330.00330 * 19 17 15 23 23 C 1.40826 * 119.64447 * 0.54108 * 14 13 12 24 24 C 1.36440 * 119.81067 * 359.73281 * 23 14 13 25 25 C 1.53000 * 109.47222 * 119.99870 * 2 1 3 26 26 F 1.39904 * 109.47194 * 180.02562 * 25 2 1 27 27 F 1.39895 * 109.47075 * 299.99909 * 25 2 1 28 28 F 1.39900 * 109.47021 * 60.00059 * 25 2 1 29 29 H 1.08995 * 109.47514 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47078 * 300.00500 * 1 2 3 31 31 H 1.09002 * 109.47174 * 60.00267 * 1 2 3 32 32 H 1.00901 * 110.99681 * 321.04292 * 4 2 1 33 33 H 1.09001 * 109.47191 * 60.00219 * 5 4 2 34 34 H 1.08996 * 109.47565 * 300.00203 * 5 4 2 35 35 H 0.96701 * 113.99147 * 299.99842 * 8 6 5 36 36 H 1.09003 * 109.46715 * 65.00315 * 9 6 5 37 37 H 1.08998 * 109.47592 * 305.00224 * 9 6 5 38 38 H 1.07999 * 119.90506 * 359.97438 * 12 11 10 39 39 H 1.08000 * 120.09344 * 179.70738 * 13 12 11 40 40 H 0.97005 * 119.99704 * 180.02562 * 18 17 15 41 41 H 1.07996 * 120.09683 * 179.70684 * 23 14 13 42 42 H 1.08006 * 119.90524 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5963 -0.5329 -3.5742 7 1 1.9202 -1.3568 -3.8030 8 8 3.9013 -1.0487 -3.3042 9 6 2.6610 0.4200 -4.7694 10 8 3.0290 -0.3103 -5.9414 11 6 3.1312 0.3919 -7.0978 12 6 3.4858 -0.2617 -8.2759 13 6 3.5960 0.4380 -9.4421 14 6 3.3391 1.8226 -9.4547 15 6 3.4456 2.5534 -10.6584 16 1 3.6469 3.6142 -10.6301 17 6 3.2905 1.9035 -11.8874 18 7 2.7149 0.7291 -11.9385 19 14 3.9048 2.7116 -13.4554 20 1 5.3127 2.3082 -13.7015 21 1 3.0596 2.2812 -14.5981 22 1 3.8306 4.1880 -13.3133 23 6 2.9813 2.4756 -8.2593 24 6 2.8809 1.7623 -7.1006 25 6 2.0400 -0.7212 1.2493 26 9 3.4390 -0.7207 1.2495 27 9 1.5737 -0.0617 2.3915 28 9 1.5737 -2.0402 1.2493 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.4496 -1.4979 -1.4100 33 1 2.7588 1.0461 -2.1183 34 1 1.0871 0.6163 -2.5526 35 1 4.5564 -0.3697 -3.0922 36 1 3.4029 1.1949 -4.5764 37 1 1.6849 0.8809 -4.9201 38 1 3.6784 -1.3243 -8.2652 39 1 3.8756 -0.0693 -10.3536 40 1 2.6076 0.2783 -12.7906 41 1 2.7872 3.5380 -8.2597 42 1 2.6070 2.2616 -6.1829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772047733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -228.477976 kcal Electronic energy + Delta-G solvation = -27795.866459 eV Core-core repulsion = 23132.667164 eV Total energy + Delta-G solvation = -4663.199295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.31948 -47.86605 -47.74600 -39.23141 -38.21354 -36.75418 -35.88661 -33.34446 -32.02041 -30.10219 -29.29165 -28.80804 -26.85468 -25.32714 -24.40585 -22.23691 -22.02657 -20.73573 -20.60673 -18.78334 -18.65786 -18.03490 -17.39153 -17.09469 -16.68245 -16.20175 -15.61178 -15.32488 -15.15575 -14.70394 -14.61010 -14.38084 -14.23723 -14.14427 -13.98192 -13.96140 -13.92406 -13.59807 -13.43168 -13.35994 -12.88024 -12.36387 -12.35753 -12.28422 -12.17272 -11.80888 -11.77371 -11.43646 -11.17689 -11.00163 -10.85430 -10.66057 -10.06314 -9.97168 -9.85404 -9.36469 -9.11113 -9.05575 -7.67767 -7.06584 -6.74997 -4.28589 2.36995 2.75136 2.91749 3.07064 3.10182 3.10823 3.19177 3.48798 3.67109 3.87992 3.93306 4.18667 4.38122 4.42046 4.47592 4.59055 4.76025 4.77927 4.93345 5.01566 5.09160 5.16653 5.28847 5.44574 5.54177 5.63873 5.90435 6.01119 6.13768 6.19410 6.65838 6.69860 6.94506 7.07983 7.15540 7.42902 7.52445 7.68824 7.75394 7.97789 8.17401 8.41551 8.62187 8.87126 8.95515 10.19494 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.001750 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.892947 B =15993.193744 C =16172.494052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.121 0.879 4 N -0.667 5.667 5 C 0.032 3.968 6 C 0.114 3.886 7 H 0.105 0.895 8 O -0.538 6.538 9 C 0.039 3.961 10 O -0.317 6.317 11 C -0.010 4.010 12 C -0.118 4.118 13 C -0.133 4.133 14 C 0.088 3.912 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.199 4.199 24 C -0.168 4.168 25 C 0.460 3.540 26 F -0.174 7.174 27 F -0.187 7.187 28 F -0.183 7.183 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.357 0.643 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.373 0.627 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.280 0.720 41 H 0.094 0.906 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -0.816 21.560 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.070 4.070 3 H 0.139 0.861 4 N -0.299 5.299 5 C -0.097 4.097 6 C 0.054 3.946 7 H 0.123 0.877 8 O -0.342 6.342 9 C -0.039 4.039 10 O -0.232 6.232 11 C -0.053 4.053 12 C -0.137 4.137 13 C -0.153 4.153 14 C 0.086 3.914 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.424 5.424 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.219 4.219 24 C -0.186 4.186 25 C 0.405 3.595 26 F -0.155 7.155 27 F -0.168 7.168 28 F -0.164 7.164 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.177 0.823 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.219 0.781 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.846 -1.704 21.465 21.873 hybrid contribution -0.580 1.191 -0.588 1.449 sum -4.426 -0.513 20.877 21.347 Atomic orbital electron populations 1.22535 0.93506 1.04302 1.04575 1.22645 0.95948 0.99384 0.89069 0.86144 1.60117 1.57381 1.09687 1.02738 1.22658 1.01182 0.95576 0.90286 1.21820 0.86492 0.96539 0.89721 0.87706 1.86651 1.18613 1.37145 1.91822 1.23071 1.00005 0.94609 0.86166 1.85887 1.86493 1.36300 1.14539 1.18607 1.11193 0.90456 0.85072 1.19850 1.04649 0.98364 0.90848 1.20992 1.03160 0.95044 0.96072 1.17604 0.89409 0.92172 0.92230 1.19471 1.43527 0.96336 0.89982 0.90533 1.25889 0.92552 0.94695 1.01128 1.69834 1.30431 1.14052 1.28111 0.86314 0.79606 0.80489 0.80291 1.19294 1.20382 1.18721 1.20555 1.09658 0.98390 0.93323 1.20378 1.07370 0.92969 0.97932 1.20493 0.76047 0.77644 0.85287 1.93209 1.29302 1.96299 1.96678 1.93169 1.88639 1.80909 1.54125 1.93166 1.88445 1.38030 1.96761 0.90755 0.90417 0.90182 0.82309 0.89731 0.93099 0.78061 0.92783 0.92502 0.88401 0.85650 0.90886 0.88770 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 8.92 37.15 0.33 -0.61 16 2 C 0.04 0.27 2.56 -67.71 -0.17 0.10 16 3 H 0.12 0.64 7.80 -51.93 -0.40 0.23 16 4 N -0.67 -5.16 5.96 -106.73 -0.64 -5.79 16 5 C 0.03 0.24 5.15 -3.83 -0.02 0.22 16 6 C 0.11 1.27 3.45 -26.73 -0.09 1.18 16 7 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 8 O -0.54 -6.93 13.17 -40.06 -0.53 -7.46 16 9 C 0.04 0.55 4.37 37.16 0.16 0.71 16 10 O -0.32 -6.26 10.09 -23.55 -0.24 -6.50 16 11 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 12 C -0.12 -2.85 9.92 -39.83 -0.40 -3.25 16 13 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 14 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 15 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 16 16 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 17 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.80 -20.52 10.96 55.54 0.61 -19.91 16 19 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.20 -4.81 9.74 -39.25 -0.38 -5.20 16 24 C -0.17 -3.68 8.96 -39.83 -0.36 -4.03 16 25 C 0.46 3.91 2.82 37.16 0.10 4.01 16 26 F -0.17 -1.81 17.24 2.25 0.04 -1.78 16 27 F -0.19 -1.59 16.80 2.25 0.04 -1.55 16 28 F -0.18 -1.73 16.72 2.25 0.04 -1.69 16 29 H 0.07 0.38 7.79 -51.93 -0.40 -0.03 16 30 H 0.08 0.35 7.80 -51.93 -0.41 -0.06 16 31 H 0.08 0.35 7.45 -51.93 -0.39 -0.04 16 32 H 0.36 2.66 8.47 -39.29 -0.33 2.32 16 33 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.05 0.32 7.44 -51.93 -0.39 -0.06 16 35 H 0.37 3.68 9.05 45.56 0.41 4.09 16 36 H 0.05 0.71 7.65 -51.93 -0.40 0.32 16 37 H 0.06 0.75 7.65 -51.93 -0.40 0.36 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.13 3.33 6.17 -52.49 -0.32 3.01 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 41 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.09 1.70 6.27 -52.48 -0.33 1.37 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -29.99 364.89 -7.25 -37.24 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.59 Total: 8.60 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -2.45 Total: -20.17 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: -0.03 Total: -25.70 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.77 Total: -13.96 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.01 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.99 -7.25 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772047733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.241 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds