Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47345 * 2 1 4 4 N 1.46903 * 109.47265 * 240.00106 * 2 1 3 5 5 C 1.46893 * 111.00297 * 84.99829 * 4 2 1 6 6 C 1.53003 * 109.47506 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.46630 * 59.99981 * 6 5 4 8 8 O 1.42902 * 109.47210 * 300.00598 * 6 5 4 9 9 C 1.52996 * 109.47342 * 179.97438 * 6 5 4 10 10 O 1.42905 * 109.46857 * 184.99926 * 9 6 5 11 11 C 1.35672 * 116.99443 * 179.97438 * 10 9 6 12 12 C 1.39320 * 119.81318 * 180.02562 * 11 10 9 13 13 C 1.36440 * 120.18380 * 180.25944 * 12 11 10 14 14 C 1.40837 * 119.80773 * 359.45756 * 13 12 11 15 15 C 1.41218 * 120.17528 * 180.25420 * 14 13 12 16 16 H 1.08003 * 119.99900 * 204.72191 * 15 14 13 17 17 C 1.39892 * 120.00136 * 24.72013 * 15 14 13 18 18 N 1.30882 * 119.99699 * 17.77743 * 17 15 14 19 19 Si 1.86795 * 120.00105 * 197.77306 * 17 15 14 20 20 H 1.48506 * 109.47332 * 90.00214 * 19 17 15 21 21 H 1.48504 * 109.47329 * 210.00225 * 19 17 15 22 22 H 1.48506 * 109.47349 * 330.00330 * 19 17 15 23 23 C 1.40826 * 119.64447 * 0.54108 * 14 13 12 24 24 C 1.36440 * 119.81067 * 359.73281 * 23 14 13 25 25 C 1.53000 * 109.47222 * 119.99870 * 2 1 3 26 26 F 1.39904 * 109.47194 * 180.02562 * 25 2 1 27 27 F 1.39895 * 109.47075 * 299.99909 * 25 2 1 28 28 F 1.39900 * 109.47021 * 60.00059 * 25 2 1 29 29 H 1.08995 * 109.47514 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47078 * 300.00500 * 1 2 3 31 31 H 1.09002 * 109.47174 * 60.00267 * 1 2 3 32 32 H 1.00901 * 110.99681 * 321.04292 * 4 2 1 33 33 H 1.09001 * 109.47191 * 60.00219 * 5 4 2 34 34 H 1.08996 * 109.47565 * 300.00203 * 5 4 2 35 35 H 0.96701 * 113.99147 * 299.99842 * 8 6 5 36 36 H 1.09003 * 109.46715 * 65.00315 * 9 6 5 37 37 H 1.08998 * 109.47592 * 305.00224 * 9 6 5 38 38 H 1.07999 * 119.90506 * 359.97438 * 12 11 10 39 39 H 1.08000 * 120.09344 * 179.70738 * 13 12 11 40 40 H 0.97005 * 119.99704 * 180.02562 * 18 17 15 41 41 H 1.07996 * 120.09683 * 179.70684 * 23 14 13 42 42 H 1.08006 * 119.90524 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5963 -0.5329 -3.5742 7 1 1.9202 -1.3568 -3.8030 8 8 3.9013 -1.0487 -3.3042 9 6 2.6610 0.4200 -4.7694 10 8 3.0290 -0.3103 -5.9414 11 6 3.1312 0.3919 -7.0978 12 6 3.4858 -0.2617 -8.2759 13 6 3.5960 0.4380 -9.4421 14 6 3.3391 1.8226 -9.4547 15 6 3.4456 2.5534 -10.6584 16 1 3.6469 3.6142 -10.6301 17 6 3.2905 1.9035 -11.8874 18 7 2.7149 0.7291 -11.9385 19 14 3.9048 2.7116 -13.4554 20 1 5.3127 2.3082 -13.7015 21 1 3.0596 2.2812 -14.5981 22 1 3.8306 4.1880 -13.3133 23 6 2.9813 2.4756 -8.2593 24 6 2.8809 1.7623 -7.1006 25 6 2.0400 -0.7212 1.2493 26 9 3.4390 -0.7207 1.2495 27 9 1.5737 -0.0617 2.3915 28 9 1.5737 -2.0402 1.2493 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.4496 -1.4979 -1.4100 33 1 2.7588 1.0461 -2.1183 34 1 1.0871 0.6163 -2.5526 35 1 4.5564 -0.3697 -3.0922 36 1 3.4029 1.1949 -4.5764 37 1 1.6849 0.8809 -4.9201 38 1 3.6784 -1.3243 -8.2652 39 1 3.8756 -0.0693 -10.3536 40 1 2.6076 0.2783 -12.7906 41 1 2.7872 3.5380 -8.2597 42 1 2.6070 2.2616 -6.1829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772047733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -248.712644 kcal Electronic energy + Delta-G solvation = -27796.743900 eV Core-core repulsion = 23132.667164 eV Total energy + Delta-G solvation = -4664.076737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.00224 -48.54005 -48.47073 -40.65063 -39.25635 -38.05278 -36.98927 -35.17023 -32.76710 -31.73241 -30.96935 -30.02029 -27.42817 -26.81287 -25.65854 -23.29998 -22.71038 -22.46459 -22.11431 -19.47642 -19.33917 -19.24176 -18.84475 -18.44336 -17.63756 -17.29094 -17.02783 -16.21539 -16.10112 -15.80725 -15.69281 -15.45224 -15.26096 -15.21039 -14.93356 -14.78952 -14.68591 -14.64193 -14.41928 -14.09971 -14.02526 -13.90998 -13.80168 -13.53766 -13.02531 -12.93260 -12.80812 -12.79141 -12.58789 -12.37889 -12.29135 -11.91535 -11.67060 -11.57737 -11.20808 -10.93282 -10.87391 -9.64818 -9.55285 -8.91483 -8.59074 -6.22273 0.95640 1.03585 1.40183 1.53082 1.53299 1.75737 2.22918 2.31795 2.73001 2.81274 2.94909 3.11108 3.49945 3.62250 3.71208 3.85115 3.90562 4.01282 4.04981 4.08780 4.30185 4.34957 4.38259 4.49362 4.57001 4.61935 4.71141 4.87860 5.02895 5.08292 5.10355 5.22806 5.29025 5.57413 5.62646 5.65830 5.89086 6.06707 6.10872 6.27216 6.57514 6.81719 6.90736 6.95771 7.11633 8.37358 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.001750 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.892947 B =15993.193744 C =16172.494052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.137 0.863 4 N -0.681 5.681 5 C 0.044 3.956 6 C 0.121 3.879 7 H 0.097 0.903 8 O -0.561 6.561 9 C 0.029 3.971 10 O -0.332 6.332 11 C 0.002 3.998 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.053 3.947 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.832 5.832 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.208 4.208 24 C -0.163 4.163 25 C 0.455 3.545 26 F -0.188 7.188 27 F -0.188 7.188 28 F -0.191 7.191 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.357 0.643 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.384 0.616 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.107 0.893 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 0.485 22.775 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.062 4.062 3 H 0.154 0.846 4 N -0.313 5.313 5 C -0.085 4.085 6 C 0.061 3.939 7 H 0.115 0.885 8 O -0.368 6.368 9 C -0.048 4.048 10 O -0.248 6.248 11 C -0.042 4.042 12 C -0.155 4.155 13 C -0.173 4.173 14 C 0.051 3.949 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.182 4.182 18 N -0.459 5.459 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.181 1.181 23 C -0.227 4.227 24 C -0.182 4.182 25 C 0.400 3.600 26 F -0.169 7.169 27 F -0.169 7.169 28 F -0.173 7.173 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.177 0.823 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.448 -0.399 22.716 23.151 hybrid contribution -0.415 0.706 -0.729 1.096 sum -4.863 0.307 21.988 22.521 Atomic orbital electron populations 1.22519 0.92170 1.04379 1.05413 1.22665 0.96829 0.99436 0.87288 0.84559 1.60033 1.58034 1.10064 1.03169 1.22517 1.02377 0.95080 0.88497 1.21799 0.85902 0.96090 0.90090 0.88545 1.86620 1.19730 1.38503 1.91905 1.23507 1.01000 0.95563 0.84708 1.85881 1.86374 1.37441 1.15103 1.18667 1.08982 0.90787 0.85728 1.20016 1.05214 0.98880 0.91378 1.20900 1.04802 0.95367 0.96233 1.17963 0.90712 0.92666 0.93538 1.19715 1.45461 0.96597 0.91052 0.90539 1.26747 0.92059 0.95206 1.04179 1.69895 1.31254 1.15432 1.29310 0.85200 0.78970 0.79522 0.75973 1.18879 1.19456 1.18122 1.20823 1.09258 0.99240 0.93419 1.20705 1.06012 0.92683 0.98783 1.20916 0.75402 0.77522 0.86190 1.93178 1.30612 1.96355 1.96787 1.93163 1.88542 1.80821 1.54404 1.93147 1.88449 1.38829 1.96838 0.91112 0.89882 0.88984 0.82300 0.88409 0.91062 0.76729 0.91375 0.91013 0.87716 0.87416 0.90262 0.87509 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 8.92 71.98 0.64 -0.68 16 2 C 0.05 0.51 2.56 44.91 0.12 0.63 16 3 H 0.14 0.98 7.80 -2.38 -0.02 0.96 16 4 N -0.68 -8.83 5.96 -491.58 -2.93 -11.77 16 5 C 0.04 0.51 5.15 86.31 0.44 0.96 16 6 C 0.12 2.39 3.45 30.59 0.11 2.49 16 7 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 8 O -0.56 -13.46 13.17 -144.36 -1.90 -15.36 16 9 C 0.03 0.71 4.37 71.98 0.31 1.03 16 10 O -0.33 -12.56 10.09 -85.28 -0.86 -13.42 16 11 C 0.00 0.10 6.71 22.79 0.15 0.25 16 12 C -0.14 -6.66 9.92 22.11 0.22 -6.44 16 13 C -0.15 -8.24 8.64 22.49 0.19 -8.05 16 14 C 0.05 2.88 5.57 -21.28 -0.12 2.76 16 15 C -0.50 -26.80 9.04 23.40 0.21 -26.58 16 16 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 17 C 0.03 1.61 5.14 85.23 0.44 2.05 16 18 N -0.83 -43.95 10.96 21.82 0.24 -43.71 16 19 Si 0.98 38.29 29.59 68.60 2.03 40.32 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 C -0.21 -9.91 9.74 22.48 0.22 -9.70 16 24 C -0.16 -6.84 8.96 22.11 0.20 -6.64 16 25 C 0.45 7.06 2.82 71.98 0.20 7.26 16 26 F -0.19 -3.73 17.24 44.97 0.78 -2.95 16 27 F -0.19 -2.92 16.80 44.97 0.76 -2.16 16 28 F -0.19 -3.43 16.72 44.97 0.75 -2.68 16 29 H 0.07 0.57 7.79 -2.39 -0.02 0.55 16 30 H 0.08 0.53 7.80 -2.39 -0.02 0.51 16 31 H 0.09 0.46 7.45 -2.39 -0.02 0.45 16 32 H 0.36 4.61 8.47 -89.69 -0.76 3.85 16 33 H 0.10 0.93 8.06 -2.39 -0.02 0.91 16 34 H 0.07 0.58 7.44 -2.39 -0.02 0.57 16 35 H 0.38 6.83 9.05 -74.06 -0.67 6.16 16 36 H 0.07 1.54 7.65 -2.39 -0.02 1.52 16 37 H 0.07 1.62 7.65 -2.39 -0.02 1.60 16 38 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 40 H 0.29 13.72 8.30 -92.70 -0.77 12.95 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.13 4.38 6.27 -2.91 -0.02 4.36 16 Total: -1.00 -66.06 364.89 1.85 -64.21 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.35 Total: 28.19 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.34 Total: -40.65 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -2.69 Total: -55.48 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -2.76 Total: -28.78 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 2.28 Total: -7.80 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -66.06 1.85 -64.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772047733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.504 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds