Wall clock time and date at job start Tue Mar 31 2020 17:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86792 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47308 * 240.00433 * 3 2 1 5 5 H 1.48498 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47486 * 119.99920 * 3 2 1 7 7 C 1.38720 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00137 * 179.97438 * 7 2 1 9 9 O 1.34782 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.35575 * 117.00425 * 185.05533 * 9 7 2 11 11 C 1.39173 * 119.89336 * 354.45499 * 10 9 7 12 12 C 1.37603 * 120.09887 * 180.24968 * 11 10 9 13 13 C 1.40023 * 119.89577 * 359.47690 * 12 11 10 14 14 C 1.46966 * 120.09888 * 180.22996 * 13 12 11 15 15 C 1.35017 * 119.99922 * 0.29132 * 14 13 12 16 16 C 1.46259 * 119.99615 * 180.02562 * 15 14 13 17 17 O 1.21718 * 120.00150 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.46496 * 120.00318 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47139 * 179.97438 * 19 18 16 21 21 C 1.52993 * 113.00119 * 48.17702 * 20 19 18 22 22 O 1.42905 * 109.47490 * 179.97438 * 21 20 19 23 23 C 1.54038 * 113.81595 * 276.18785 * 20 19 18 24 24 O 1.44180 * 85.51821 * 223.19543 * 23 20 19 25 25 C 1.44176 * 93.33830 * 24.19314 * 24 23 20 26 26 C 1.40025 * 119.79636 * 0.51886 * 13 12 11 27 27 C 1.37593 * 119.89919 * 359.73042 * 26 13 12 28 28 H 0.96993 * 120.00112 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.95688 * 359.96841 * 11 10 9 30 30 H 1.08004 * 120.05030 * 179.72172 * 12 11 10 31 31 H 1.08006 * 119.99714 * 180.28469 * 14 13 12 32 32 H 1.07996 * 120.00360 * 359.97438 * 15 14 13 33 33 H 0.97004 * 119.99460 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.47259 * 300.00089 * 19 18 16 35 35 H 1.09002 * 109.46567 * 59.99834 * 19 18 16 36 36 H 1.08997 * 109.47326 * 300.00064 * 21 20 19 37 37 H 1.09000 * 109.47141 * 59.99791 * 21 20 19 38 38 H 0.96698 * 113.99714 * 180.02562 * 22 21 20 39 39 H 1.09000 * 113.86708 * 337.34379 * 23 20 19 40 40 H 1.09005 * 113.86154 * 109.05258 * 23 20 19 41 41 H 1.09002 * 113.86777 * 221.65309 * 25 24 23 42 42 H 1.09004 * 113.86568 * 89.95323 * 25 24 23 43 43 H 1.08004 * 120.04705 * 179.76001 * 26 13 12 44 44 H 1.08002 * 119.94847 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7463 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0087 -1.2014 -0.0005 8 1 3.0886 -1.2014 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0690 -3.5034 0.1054 11 6 3.4590 -3.4340 0.0912 12 6 4.2084 -4.5835 0.1933 13 6 3.5705 -5.8233 0.3225 14 6 4.3665 -7.0534 0.4369 15 6 5.7151 -6.9885 0.4234 16 6 6.5072 -8.2127 0.5367 17 8 5.9508 -9.2900 0.6436 18 7 7.8534 -8.1481 0.5226 19 6 8.6469 -9.3742 0.6367 20 6 10.1357 -9.0241 0.5936 21 6 10.5073 -7.8763 1.5344 22 8 11.9085 -7.6134 1.4349 23 6 10.6973 -8.8698 -0.8324 24 8 11.8270 -9.6231 -0.3473 25 6 11.0657 -10.2468 0.7064 26 6 2.1718 -5.8881 0.3363 27 6 1.4306 -4.7338 0.2285 28 1 -0.4850 0.8400 0.0004 29 1 3.9502 -2.4770 -0.0046 30 1 5.2869 -4.5292 0.1777 31 1 3.8728 -8.0093 0.5319 32 1 6.2088 -6.0327 0.3281 33 1 8.2968 -7.2895 0.4378 34 1 8.4169 -9.8695 1.5800 35 1 8.4066 -10.0408 -0.1917 36 1 9.9489 -6.9827 1.2557 37 1 10.2619 -8.1530 2.5598 38 1 12.2154 -6.8959 2.0058 39 1 10.1155 -9.3889 -1.5941 40 1 10.9366 -7.8414 -1.1033 41 1 11.5971 -10.3107 1.6560 42 1 10.5963 -11.1863 0.4146 43 1 1.6755 -6.8426 0.4319 44 1 0.3518 -4.7829 0.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492218893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:43 Heat of formation + Delta-G solvation = -79.298020 kcal Electronic energy + Delta-G solvation = -26743.982336 eV Core-core repulsion = 22629.108710 eV Total energy + Delta-G solvation = -4114.873627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28746 -39.53363 -39.13067 -36.95410 -36.82155 -35.16822 -33.28857 -32.34952 -31.43967 -30.41050 -28.48876 -26.97786 -26.56090 -25.79279 -25.27184 -23.10888 -22.12848 -20.85456 -19.73300 -19.11135 -18.25998 -18.00926 -17.53061 -16.77309 -16.66536 -16.53154 -15.93328 -15.28954 -15.14019 -15.07564 -14.83196 -14.56000 -14.55188 -13.93133 -13.84626 -13.84106 -13.60822 -13.03497 -12.94828 -12.80124 -12.50769 -12.09660 -11.86122 -11.79834 -11.73979 -11.55620 -11.14377 -11.08015 -10.98429 -10.78880 -10.59468 -10.40587 -9.99150 -9.85229 -9.65740 -9.53022 -9.26623 -8.89087 -8.42366 -7.15933 -6.68687 -4.23682 1.01303 2.09728 2.50452 2.98988 3.00644 3.02136 3.05025 3.26903 3.50264 3.63735 3.68866 3.78697 4.12512 4.46917 4.59127 4.76131 4.86753 4.88970 4.90031 4.96406 5.04300 5.07862 5.14378 5.15408 5.25355 5.36847 5.49474 5.50474 5.59701 5.63855 5.64171 5.83640 5.98545 6.03735 6.20618 6.41610 6.47634 6.54153 6.72488 6.90170 7.06527 7.16701 7.19040 7.24459 7.41432 7.59956 7.76239 8.23689 8.75643 9.42571 10.47748 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.001888 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.417089 B =14829.626401 C =16242.972123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.161 6.161 10 C 0.167 3.833 11 C -0.243 4.243 12 C -0.037 4.037 13 C -0.201 4.201 14 C 0.042 3.958 15 C -0.287 4.287 16 C 0.557 3.443 17 O -0.557 6.557 18 N -0.736 5.736 19 C 0.133 3.867 20 C -0.147 4.147 21 C 0.099 3.901 22 O -0.558 6.558 23 C 0.052 3.948 24 O -0.363 6.363 25 C 0.057 3.943 26 C -0.039 4.039 27 C -0.199 4.199 28 H 0.275 0.725 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.380 0.620 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.710 -13.040 2.522 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.110 3.890 11 C -0.262 4.262 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.022 3.978 15 C -0.308 4.308 16 C 0.349 3.651 17 O -0.438 6.438 18 N -0.389 5.389 19 C 0.009 3.991 20 C -0.147 4.147 21 C 0.021 3.979 22 O -0.363 6.363 23 C -0.025 4.025 24 O -0.281 6.281 25 C -0.021 4.021 26 C -0.058 4.058 27 C -0.218 4.218 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.094 -14.062 2.055 23.008 hybrid contribution 0.501 1.801 0.439 1.921 sum 18.595 -12.261 2.494 22.413 Atomic orbital electron populations 1.70000 1.06146 1.28434 1.43737 1.25404 0.95915 0.99173 0.95993 0.85709 0.78776 0.79204 0.79413 1.19250 1.20057 1.19248 1.21422 0.92057 0.80566 1.52859 0.88598 1.83905 1.34977 1.11800 1.75514 1.19614 0.90331 0.87878 0.91143 1.21092 0.93652 0.99085 1.12413 1.20988 0.98472 0.91457 0.94605 1.18458 0.93024 0.92276 1.16433 1.22294 0.93193 0.96951 0.85373 1.22399 0.94863 0.96644 1.16886 1.18432 0.81543 0.89813 0.75322 1.90782 1.71352 1.30809 1.50822 1.45903 1.06456 1.09710 1.76825 1.21294 0.87002 0.87808 1.03000 1.24045 0.95216 0.97692 0.97765 1.21717 0.82852 0.95729 0.97621 1.86609 1.22495 1.58503 1.68674 1.23969 0.86566 0.98071 0.93893 1.89749 1.28846 1.61427 1.48126 1.23847 0.90806 0.94335 0.93067 1.20876 0.92493 0.97058 0.95356 1.20157 0.99855 0.90136 1.11678 0.91492 0.85179 0.86877 0.85874 0.85962 0.76566 0.90861 0.90534 0.92869 0.92533 0.77278 0.90005 0.88990 0.88849 0.89949 0.86358 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.52 13.67 55.48 0.76 -22.76 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.95 19.12 29.55 -169.99 -5.02 14.10 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.39 -10.27 9.48 30.91 0.29 -9.98 16 8 H 0.10 2.28 5.18 -52.49 -0.27 2.01 16 9 O -0.16 -4.31 9.74 0.72 0.01 -4.30 16 10 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 11 C -0.24 -4.87 9.14 -39.47 -0.36 -5.23 16 12 C -0.04 -0.63 9.40 -39.14 -0.37 -0.99 16 13 C -0.20 -3.31 5.87 -105.02 -0.62 -3.92 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 15 C -0.29 -3.70 9.41 -37.51 -0.35 -4.06 16 16 C 0.56 7.25 7.74 -13.04 -0.10 7.15 16 17 O -0.56 -9.21 16.23 5.17 0.08 -9.13 16 18 N -0.74 -6.74 5.31 -61.76 -0.33 -7.07 16 19 C 0.13 1.08 5.19 -4.05 -0.02 1.06 16 20 C -0.15 -1.02 1.15 -153.43 -0.18 -1.20 16 21 C 0.10 0.60 6.29 37.15 0.23 0.84 16 22 O -0.56 -3.93 12.10 -52.76 -0.64 -4.57 16 23 C 0.05 0.41 8.07 37.61 0.30 0.72 16 24 O -0.36 -3.78 11.59 -52.76 -0.61 -4.39 16 25 C 0.06 0.42 8.07 37.61 0.30 0.73 16 26 C -0.04 -0.67 9.78 -39.15 -0.38 -1.05 16 27 C -0.20 -3.93 9.97 -39.47 -0.39 -4.32 16 28 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.13 2.56 5.62 -52.49 -0.29 2.27 16 30 H 0.11 1.56 6.16 -52.48 -0.32 1.24 16 31 H 0.12 1.77 7.52 -52.48 -0.39 1.37 16 32 H 0.12 1.36 6.07 -52.49 -0.32 1.04 16 33 H 0.40 2.78 6.78 -40.82 -0.28 2.50 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.67 7.93 -51.93 -0.41 0.25 16 36 H 0.05 0.27 6.55 -51.93 -0.34 -0.07 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.38 1.10 9.12 45.56 0.42 1.51 16 39 H 0.08 0.58 7.96 -51.93 -0.41 0.17 16 40 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 43 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -32.91 374.57 -7.17 -40.08 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.72 Total: 7.92 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.35 Total: -15.52 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.43 Total: -29.83 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.16 Total: -22.39 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.91 -7.17 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492218893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.217 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds