Wall clock time and date at job start Tue Mar 31 2020 17:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86792 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47308 * 240.00433 * 3 2 1 5 5 H 1.48498 * 109.46944 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47486 * 119.99920 * 3 2 1 7 7 C 1.38720 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00137 * 179.97438 * 7 2 1 9 9 O 1.34782 * 120.00171 * 359.97438 * 7 2 1 10 10 C 1.35575 * 117.00425 * 185.05533 * 9 7 2 11 11 C 1.39173 * 119.89336 * 354.45499 * 10 9 7 12 12 C 1.37603 * 120.09887 * 180.24968 * 11 10 9 13 13 C 1.40023 * 119.89577 * 359.47690 * 12 11 10 14 14 C 1.46966 * 120.09888 * 180.22996 * 13 12 11 15 15 C 1.35017 * 119.99922 * 0.29132 * 14 13 12 16 16 C 1.46259 * 119.99615 * 180.02562 * 15 14 13 17 17 O 1.21718 * 120.00150 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00040 * 179.97438 * 16 15 14 19 19 C 1.46496 * 120.00318 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47139 * 179.97438 * 19 18 16 21 21 C 1.52993 * 113.00119 * 48.17702 * 20 19 18 22 22 O 1.42905 * 109.47490 * 179.97438 * 21 20 19 23 23 C 1.54038 * 113.81595 * 276.18785 * 20 19 18 24 24 O 1.44180 * 85.51821 * 223.19543 * 23 20 19 25 25 C 1.44176 * 93.33830 * 24.19314 * 24 23 20 26 26 C 1.40025 * 119.79636 * 0.51886 * 13 12 11 27 27 C 1.37593 * 119.89919 * 359.73042 * 26 13 12 28 28 H 0.96993 * 120.00112 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.95688 * 359.96841 * 11 10 9 30 30 H 1.08004 * 120.05030 * 179.72172 * 12 11 10 31 31 H 1.08006 * 119.99714 * 180.28469 * 14 13 12 32 32 H 1.07996 * 120.00360 * 359.97438 * 15 14 13 33 33 H 0.97004 * 119.99460 * 0.02562 * 18 16 15 34 34 H 1.09000 * 109.47259 * 300.00089 * 19 18 16 35 35 H 1.09002 * 109.46567 * 59.99834 * 19 18 16 36 36 H 1.08997 * 109.47326 * 300.00064 * 21 20 19 37 37 H 1.09000 * 109.47141 * 59.99791 * 21 20 19 38 38 H 0.96698 * 113.99714 * 180.02562 * 22 21 20 39 39 H 1.09000 * 113.86708 * 337.34379 * 23 20 19 40 40 H 1.09005 * 113.86154 * 109.05258 * 23 20 19 41 41 H 1.09002 * 113.86777 * 221.65309 * 25 24 23 42 42 H 1.09004 * 113.86568 * 89.95323 * 25 24 23 43 43 H 1.08004 * 120.04705 * 179.76001 * 26 13 12 44 44 H 1.08002 * 119.94847 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7463 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0087 -1.2014 -0.0005 8 1 3.0886 -1.2014 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0690 -3.5034 0.1054 11 6 3.4590 -3.4340 0.0912 12 6 4.2084 -4.5835 0.1933 13 6 3.5705 -5.8233 0.3225 14 6 4.3665 -7.0534 0.4369 15 6 5.7151 -6.9885 0.4234 16 6 6.5072 -8.2127 0.5367 17 8 5.9508 -9.2900 0.6436 18 7 7.8534 -8.1481 0.5226 19 6 8.6469 -9.3742 0.6367 20 6 10.1357 -9.0241 0.5936 21 6 10.5073 -7.8763 1.5344 22 8 11.9085 -7.6134 1.4349 23 6 10.6973 -8.8698 -0.8324 24 8 11.8270 -9.6231 -0.3473 25 6 11.0657 -10.2468 0.7064 26 6 2.1718 -5.8881 0.3363 27 6 1.4306 -4.7338 0.2285 28 1 -0.4850 0.8400 0.0004 29 1 3.9502 -2.4770 -0.0046 30 1 5.2869 -4.5292 0.1777 31 1 3.8728 -8.0093 0.5319 32 1 6.2088 -6.0327 0.3281 33 1 8.2968 -7.2895 0.4378 34 1 8.4169 -9.8695 1.5800 35 1 8.4066 -10.0408 -0.1917 36 1 9.9489 -6.9827 1.2557 37 1 10.2619 -8.1530 2.5598 38 1 12.2154 -6.8959 2.0058 39 1 10.1155 -9.3889 -1.5941 40 1 10.9366 -7.8414 -1.1033 41 1 11.5971 -10.3107 1.6560 42 1 10.5963 -11.1863 0.4146 43 1 1.6755 -6.8426 0.4319 44 1 0.3518 -4.7829 0.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492218893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:42 Heat of formation + Delta-G solvation = -103.912037 kcal Electronic energy + Delta-G solvation = -26745.049680 eV Core-core repulsion = 22629.108710 eV Total energy + Delta-G solvation = -4115.940971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91840 -40.87813 -40.41057 -38.48922 -37.33541 -36.03104 -34.74855 -33.99153 -32.21849 -31.89326 -29.83610 -27.55590 -27.54723 -27.03050 -26.22424 -24.34943 -23.59373 -22.07035 -20.67632 -19.93412 -19.83798 -19.11798 -18.58319 -17.90511 -17.33964 -17.23257 -16.76511 -16.43789 -16.24522 -16.03446 -15.93557 -15.79281 -15.60588 -15.56272 -15.31285 -14.90156 -14.45833 -14.37721 -14.00785 -13.70752 -13.62073 -13.33378 -13.29220 -13.13777 -12.66434 -12.49124 -12.38643 -12.31317 -12.15420 -12.13830 -11.64118 -11.19034 -11.09841 -10.97445 -10.85369 -10.57557 -10.56191 -10.10704 -9.88261 -8.67191 -8.50981 -6.17416 -0.23641 0.59578 1.14601 1.36694 1.48452 1.52849 2.16132 2.17098 2.37344 2.69586 2.87602 3.05200 3.18960 3.21459 3.44264 3.57333 3.82353 3.91820 4.06500 4.10960 4.28948 4.32620 4.36940 4.37744 4.47306 4.49698 4.53595 4.60577 4.62283 4.65041 4.77556 4.94070 4.98254 5.04012 5.07003 5.18129 5.24974 5.30800 5.32568 5.41851 5.59143 5.64315 5.82836 5.98096 6.11793 6.54620 6.90976 6.93042 7.25623 7.70810 8.70962 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.001888 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.417089 B =14829.626401 C =16242.972123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.416 4.416 8 H 0.109 0.891 9 O -0.221 6.221 10 C 0.129 3.871 11 C -0.248 4.248 12 C -0.037 4.037 13 C -0.171 4.171 14 C 0.017 3.983 15 C -0.248 4.248 16 C 0.552 3.448 17 O -0.592 6.592 18 N -0.716 5.716 19 C 0.136 3.864 20 C -0.134 4.134 21 C 0.097 3.903 22 O -0.579 6.579 23 C 0.048 3.952 24 O -0.395 6.395 25 C 0.053 3.947 26 C -0.039 4.039 27 C -0.210 4.210 28 H 0.274 0.726 29 H 0.128 0.872 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.152 0.848 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.340 -14.645 2.962 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.126 0.874 9 O -0.127 6.127 10 C 0.077 3.923 11 C -0.267 4.267 12 C -0.055 4.055 13 C -0.172 4.172 14 C -0.002 4.002 15 C -0.269 4.269 16 C 0.344 3.656 17 O -0.475 6.475 18 N -0.368 5.368 19 C 0.012 3.988 20 C -0.134 4.134 21 C 0.019 3.981 22 O -0.386 6.386 23 C -0.029 4.029 24 O -0.314 6.314 25 C -0.024 4.024 26 C -0.057 4.057 27 C -0.229 4.229 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.170 0.830 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.809 -15.710 2.505 26.995 hybrid contribution -0.239 1.696 0.345 1.747 sum 21.570 -14.015 2.850 25.881 Atomic orbital electron populations 1.70150 1.08148 1.29151 1.47753 1.26654 0.96833 1.02916 0.95545 0.84629 0.77412 0.74024 0.80091 1.17963 1.19887 1.17948 1.21882 0.92788 0.81122 1.53379 0.87425 1.83891 1.36366 1.12809 1.79593 1.20185 0.91791 0.87823 0.92504 1.21233 0.92816 1.00366 1.12304 1.21359 1.00341 0.90281 0.93536 1.18794 0.93057 0.93055 1.12318 1.22188 0.93781 0.96054 0.88226 1.22750 0.94422 0.97799 1.11914 1.18487 0.82642 0.89171 0.75310 1.90790 1.72298 1.32003 1.52370 1.45773 1.05360 1.11008 1.74688 1.21320 0.87384 0.87173 1.02901 1.23916 0.94047 0.97983 0.97473 1.21788 0.82779 0.95807 0.97755 1.86568 1.22999 1.59580 1.69502 1.24094 0.86096 0.98092 0.94586 1.89723 1.30392 1.62146 1.49098 1.24012 0.90672 0.94995 0.92694 1.21257 0.92998 0.97333 0.94121 1.20388 1.00243 0.90397 1.11917 0.91650 0.85422 0.82842 0.85498 0.83272 0.74857 0.90830 0.90862 0.91465 0.91726 0.75356 0.89384 0.88781 0.88504 0.88745 0.83025 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.67 21.62 0.30 -53.82 16 2 C -0.02 -1.13 5.49 84.86 0.47 -0.67 16 3 Si 1.02 40.44 29.55 68.60 2.03 42.46 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.42 -22.90 9.48 67.94 0.64 -22.26 16 8 H 0.11 5.31 5.18 -2.91 -0.02 5.30 16 9 O -0.22 -12.68 9.74 -20.33 -0.20 -12.88 16 10 C 0.13 6.04 6.66 22.72 0.15 6.19 16 11 C -0.25 -9.81 9.14 22.34 0.20 -9.61 16 12 C -0.04 -1.14 9.40 22.55 0.21 -0.93 16 13 C -0.17 -5.06 5.87 -20.12 -0.12 -5.17 16 14 C 0.02 0.43 9.45 23.82 0.23 0.65 16 15 C -0.25 -5.09 9.41 23.61 0.22 -4.87 16 16 C 0.55 11.94 7.74 86.33 0.67 12.61 16 17 O -0.59 -17.56 16.23 -4.41 -0.07 -17.63 16 18 N -0.72 -9.89 5.31 -467.50 -2.48 -12.37 16 19 C 0.14 1.73 5.19 86.38 0.45 2.18 16 20 C -0.13 -1.45 1.15 -51.48 -0.06 -1.51 16 21 C 0.10 0.83 6.29 71.98 0.45 1.29 16 22 O -0.58 -6.57 12.10 -132.22 -1.60 -8.17 16 23 C 0.05 0.64 8.07 72.28 0.58 1.22 16 24 O -0.39 -7.48 11.59 -132.22 -1.53 -9.02 16 25 C 0.05 0.67 8.07 72.27 0.58 1.26 16 26 C -0.04 -1.24 9.78 22.55 0.22 -1.02 16 27 C -0.21 -8.44 9.97 22.34 0.22 -8.22 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.13 5.03 5.62 -2.91 -0.02 5.02 16 30 H 0.15 3.38 6.16 -2.91 -0.02 3.36 16 31 H 0.13 3.15 7.52 -2.91 -0.02 3.13 16 32 H 0.15 2.28 6.07 -2.91 -0.02 2.26 16 33 H 0.41 3.55 6.78 -92.71 -0.63 2.92 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.05 7.93 -2.39 -0.02 1.03 16 36 H 0.07 0.37 6.55 -2.39 -0.02 0.36 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.40 1.21 9.12 -74.06 -0.68 0.54 16 39 H 0.09 1.02 7.96 -2.39 -0.02 1.01 16 40 H 0.09 1.18 8.10 -2.38 -0.02 1.16 16 41 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 43 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 44 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -76.91 374.57 1.33 -75.58 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.24 Total: 24.71 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 5.13 Total: -28.87 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -2.18 Total: -66.19 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -3.40 Total: -47.69 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -76.91 1.33 -75.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492218893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.331 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds