Wall clock time and date at job start Tue Mar 31 2020 17:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 116.99980 * 2 1 4 4 O 1.20824 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00070 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46959 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00577 * 269.99802 * 6 5 3 8 8 H 1.08002 * 120.00630 * 143.38655 * 7 6 5 9 9 C 1.38952 * 119.99722 * 323.39240 * 7 6 5 10 10 N 1.31413 * 120.00302 * 158.40026 * 9 7 6 11 11 Si 1.86810 * 119.99989 * 338.40053 * 9 7 6 12 12 H 1.48502 * 109.46917 * 95.22676 * 11 9 7 13 13 H 1.48495 * 109.47092 * 215.22773 * 11 9 7 14 14 H 1.48498 * 109.46805 * 335.22732 * 11 9 7 15 15 C 1.34780 * 119.99774 * 90.00387 * 6 5 3 16 16 O 1.21286 * 120.00340 * 5.10452 * 15 6 5 17 17 C 1.50703 * 119.99968 * 185.10817 * 15 6 5 18 18 H 1.09001 * 110.66427 * 310.00315 * 17 15 6 19 19 C 1.54705 * 110.90638 * 73.32361 * 17 15 6 20 20 C 1.51651 * 101.91737 * 143.70899 * 19 17 15 21 21 C 1.37738 * 132.17011 * 164.27942 * 20 19 17 22 22 C 1.38352 * 119.97741 * 180.54530 * 21 20 19 23 23 C 1.50699 * 120.12082 * 179.97438 * 22 21 20 24 24 C 1.38293 * 119.76179 * 359.70745 * 22 21 20 25 25 C 1.50698 * 119.82162 * 180.09620 * 24 22 21 26 26 C 1.37923 * 120.35357 * 0.35619 * 24 22 21 27 27 C 1.38884 * 107.03850 * 344.50476 * 20 19 17 28 28 O 1.36132 * 111.23807 * 359.09531 * 27 20 19 29 29 H 1.09001 * 109.47130 * 59.99853 * 1 2 3 30 30 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47528 * 300.00162 * 1 2 3 32 32 H 1.08997 * 109.46549 * 59.99599 * 5 3 2 33 33 H 1.09000 * 109.46781 * 299.99615 * 5 3 2 34 34 H 0.96997 * 119.99802 * 179.97438 * 10 9 7 35 35 H 1.08997 * 110.94436 * 261.86676 * 19 17 15 36 36 H 1.08999 * 110.93864 * 25.55664 * 19 17 15 37 37 H 1.07998 * 120.01551 * 0.57283 * 21 20 19 38 38 H 1.08998 * 109.46592 * 90.00149 * 23 22 21 39 39 H 1.08991 * 109.47256 * 210.00368 * 23 22 21 40 40 H 1.09007 * 109.46848 * 330.00905 * 23 22 21 41 41 H 1.09005 * 109.47485 * 270.25658 * 25 24 22 42 42 H 1.09005 * 109.47142 * 30.25277 * 25 24 22 43 43 H 1.08993 * 109.47212 * 150.25859 * 25 24 22 44 44 H 1.08004 * 119.88072 * 179.86036 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1756 3.3369 -1.1885 8 1 3.9015 4.3774 -1.2810 9 6 4.7247 2.6641 -2.2732 10 7 4.5320 3.1152 -3.4924 11 14 5.7370 1.1183 -1.9985 12 1 4.8689 -0.0763 -2.1556 13 1 6.8381 1.0643 -2.9934 14 1 6.3086 1.1381 -0.6281 15 6 4.1732 3.3262 1.1659 16 8 4.0924 2.7218 2.2144 17 6 4.4877 4.8000 1.1681 18 1 5.3027 5.0204 0.4786 19 6 3.2323 5.6329 0.8168 20 6 3.4065 6.8511 1.7030 21 6 2.8144 8.0947 1.6924 22 6 3.1779 9.0415 2.6334 23 6 2.5326 10.4033 2.6244 24 6 4.1315 8.7318 3.5859 25 6 4.5269 9.7613 4.6130 26 6 4.7266 7.4876 3.5976 27 6 4.3654 6.5283 2.6545 28 8 4.8074 5.2507 2.4954 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9556 0.7809 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 4.9157 2.6457 -4.2495 35 1 3.2333 5.9140 -0.2363 36 1 2.3215 5.0918 1.0731 37 1 2.0664 8.3306 0.9500 38 1 1.6419 10.3874 3.2524 39 1 3.2360 11.1412 3.0100 40 1 2.2531 10.6661 1.6041 41 1 5.3574 10.3552 4.2312 42 1 3.6782 10.4137 4.8189 43 1 4.8310 9.2599 5.5316 44 1 5.4721 7.2547 4.3435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080391585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:49 Heat of formation + Delta-G solvation = -108.406659 kcal Electronic energy + Delta-G solvation = -29159.038061 eV Core-core repulsion = 25042.902189 eV Total energy + Delta-G solvation = -4116.135872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01367 -40.03705 -38.78569 -37.65392 -35.96385 -34.99367 -33.02879 -32.18931 -31.87373 -30.88432 -28.96276 -27.14088 -26.69627 -26.07270 -24.97819 -22.86025 -21.80197 -21.07232 -20.24252 -19.29331 -17.81562 -17.33703 -17.06304 -16.53222 -16.39921 -15.90958 -15.55084 -15.23958 -15.10169 -14.69387 -14.20427 -14.03406 -13.84961 -13.58129 -13.30063 -13.13170 -12.91215 -12.81741 -12.70687 -12.63349 -12.35743 -12.15183 -12.08347 -12.04805 -11.89867 -11.62783 -11.38928 -11.24505 -11.04916 -10.67482 -10.56484 -10.40801 -10.28795 -10.16684 -10.00314 -9.43519 -8.84696 -8.54566 -8.15865 -7.66761 -6.68235 -4.30845 1.45830 1.56986 2.76183 2.85022 2.88679 3.09139 3.14295 3.23288 3.63880 3.80215 3.92134 4.24636 4.70608 4.81292 4.88177 5.01453 5.07742 5.20733 5.30600 5.32767 5.37393 5.39941 5.44084 5.53022 5.53872 5.59972 5.62813 5.63834 5.70609 5.73678 5.81961 5.84480 5.90148 5.95298 6.20142 6.27670 6.40682 6.45760 6.67387 6.72031 6.76898 6.88090 6.97045 7.50212 7.78580 8.00323 8.30380 8.67103 9.02261 9.31448 10.41326 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003571 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.863027 B = 7839.146919 C = 8481.813091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.109 3.891 6 N -0.442 5.442 7 C -0.356 4.356 8 H 0.113 0.887 9 C 0.070 3.930 10 N -0.844 5.844 11 Si 0.860 3.140 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.254 1.254 15 C 0.500 3.500 16 O -0.569 6.569 17 C 0.087 3.913 18 H 0.117 0.883 19 C -0.089 4.089 20 C -0.169 4.169 21 C -0.065 4.065 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.059 4.059 25 C -0.111 4.111 26 C -0.140 4.140 27 C 0.113 3.887 28 O -0.282 6.282 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.279 0.721 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 6.497 7.333 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.373 6.373 5 C -0.016 4.016 6 N -0.164 5.164 7 C -0.482 4.482 8 H 0.130 0.870 9 C -0.139 4.139 10 N -0.478 5.478 11 Si 0.686 3.314 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.177 1.177 15 C 0.289 3.711 16 O -0.451 6.451 17 C 0.028 3.972 18 H 0.135 0.865 19 C -0.126 4.126 20 C -0.170 4.170 21 C -0.083 4.083 22 C -0.126 4.126 23 C -0.162 4.162 24 C -0.059 4.059 25 C -0.168 4.168 26 C -0.159 4.159 27 C 0.067 3.933 28 O -0.195 6.195 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.883 6.344 7.782 10.446 hybrid contribution 0.131 -0.933 -0.533 1.083 sum -2.752 5.410 7.249 9.455 Atomic orbital electron populations 1.23150 0.77383 1.02921 1.02303 1.86515 1.22779 1.34354 1.84871 1.24650 0.92725 0.81300 0.72362 1.90610 1.66552 1.36222 1.43888 1.21353 0.87095 0.87860 1.05318 1.43192 1.58560 1.08486 1.06200 1.19201 1.43491 0.98662 0.86850 0.86968 1.25326 0.95758 0.98181 0.94647 1.69753 1.39373 1.40529 0.98127 0.87188 0.81290 0.82798 0.80137 1.19453 1.20480 1.17733 1.19701 0.79651 0.88161 0.83579 1.90603 1.54786 1.68065 1.31665 1.22948 0.98868 0.93317 0.82091 0.86516 1.21636 0.98309 0.91847 1.00815 1.20895 0.99602 0.96300 1.00157 1.20124 0.98849 0.91092 0.98253 1.19524 0.99574 0.96630 0.96851 1.20687 1.00066 0.93154 1.02290 1.19337 0.96016 0.94030 0.96504 1.20786 1.01688 0.97316 0.96989 1.19989 1.03596 0.91349 1.00981 1.19620 0.93018 0.85027 0.95615 1.86880 1.76344 1.23815 1.32440 0.92110 0.88655 0.92308 0.87516 0.86604 0.91054 0.87706 0.88905 0.85865 0.91666 0.91625 0.91785 0.91146 0.91278 0.91568 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.74 10.56 -39.24 -0.41 -7.16 16 3 C 0.45 9.71 8.02 36.01 0.29 10.00 16 4 O -0.49 -11.66 16.18 -18.75 -0.30 -11.96 16 5 C 0.11 2.37 4.84 -5.19 -0.03 2.35 16 6 N -0.44 -10.46 1.68 -116.10 -0.20 -10.66 16 7 C -0.36 -8.79 8.84 -14.93 -0.13 -8.92 16 8 H 0.11 2.84 5.80 -52.49 -0.30 2.54 16 9 C 0.07 1.74 5.32 -17.47 -0.09 1.65 16 10 N -0.84 -21.96 13.96 55.50 0.77 -21.19 16 11 Si 0.86 18.61 24.95 -169.99 -4.24 14.37 16 12 H -0.27 -5.50 6.67 56.52 0.38 -5.12 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.25 -5.50 7.11 56.52 0.40 -5.09 16 15 C 0.50 11.92 6.94 -10.98 -0.08 11.84 16 16 O -0.57 -14.75 16.14 -13.41 -0.22 -14.97 16 17 C 0.09 1.83 3.08 -26.98 -0.08 1.74 16 18 H 0.12 2.35 7.73 -51.93 -0.40 1.95 16 19 C -0.09 -1.71 5.95 -26.52 -0.16 -1.87 16 20 C -0.17 -2.98 6.27 -104.10 -0.65 -3.63 16 21 C -0.07 -0.97 9.70 -39.72 -0.39 -1.36 16 22 C -0.13 -1.65 5.89 -104.56 -0.62 -2.26 16 23 C -0.11 -1.01 9.19 36.01 0.33 -0.68 16 24 C -0.06 -0.77 5.87 -104.72 -0.61 -1.39 16 25 C -0.11 -1.04 9.18 36.00 0.33 -0.71 16 26 C -0.14 -2.17 9.70 -39.31 -0.38 -2.55 16 27 C 0.11 2.10 7.04 -38.95 -0.27 1.82 16 28 O -0.28 -6.00 10.40 -39.12 -0.41 -6.41 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.11 2.29 3.08 -51.93 -0.16 2.13 16 33 H 0.12 2.36 7.36 -51.93 -0.38 1.98 16 34 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 1.94 7.00 -51.93 -0.36 1.58 16 36 H 0.09 1.93 7.92 -51.93 -0.41 1.52 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 40 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.55 6.70 -51.93 -0.35 0.20 16 43 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -31.06 364.75 -6.66 -37.71 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.68 Total: 7.15 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.47 Total: 7.62 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.58 Total: -31.85 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.34 Total: -40.50 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.24 Total: 14.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.06 -6.66 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080391585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.693 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds