Wall clock time and date at job start Tue Mar 31 2020 17:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 116.99980 * 2 1 4 4 O 1.20824 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00070 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46959 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00577 * 269.99802 * 6 5 3 8 8 H 1.08002 * 120.00630 * 143.38655 * 7 6 5 9 9 C 1.38952 * 119.99722 * 323.39240 * 7 6 5 10 10 N 1.31413 * 120.00302 * 158.40026 * 9 7 6 11 11 Si 1.86810 * 119.99989 * 338.40053 * 9 7 6 12 12 H 1.48502 * 109.46917 * 95.22676 * 11 9 7 13 13 H 1.48495 * 109.47092 * 215.22773 * 11 9 7 14 14 H 1.48498 * 109.46805 * 335.22732 * 11 9 7 15 15 C 1.34780 * 119.99774 * 90.00387 * 6 5 3 16 16 O 1.21286 * 120.00340 * 5.10452 * 15 6 5 17 17 C 1.50703 * 119.99968 * 185.10817 * 15 6 5 18 18 H 1.09001 * 110.66427 * 310.00315 * 17 15 6 19 19 C 1.54705 * 110.90638 * 73.32361 * 17 15 6 20 20 C 1.51651 * 101.91737 * 143.70899 * 19 17 15 21 21 C 1.37738 * 132.17011 * 164.27942 * 20 19 17 22 22 C 1.38352 * 119.97741 * 180.54530 * 21 20 19 23 23 C 1.50699 * 120.12082 * 179.97438 * 22 21 20 24 24 C 1.38293 * 119.76179 * 359.70745 * 22 21 20 25 25 C 1.50698 * 119.82162 * 180.09620 * 24 22 21 26 26 C 1.37923 * 120.35357 * 0.35619 * 24 22 21 27 27 C 1.38884 * 107.03850 * 344.50476 * 20 19 17 28 28 O 1.36132 * 111.23807 * 359.09531 * 27 20 19 29 29 H 1.09001 * 109.47130 * 59.99853 * 1 2 3 30 30 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47528 * 300.00162 * 1 2 3 32 32 H 1.08997 * 109.46549 * 59.99599 * 5 3 2 33 33 H 1.09000 * 109.46781 * 299.99615 * 5 3 2 34 34 H 0.96997 * 119.99802 * 179.97438 * 10 9 7 35 35 H 1.08997 * 110.94436 * 261.86676 * 19 17 15 36 36 H 1.08999 * 110.93864 * 25.55664 * 19 17 15 37 37 H 1.07998 * 120.01551 * 0.57283 * 21 20 19 38 38 H 1.08998 * 109.46592 * 90.00149 * 23 22 21 39 39 H 1.08991 * 109.47256 * 210.00368 * 23 22 21 40 40 H 1.09007 * 109.46848 * 330.00905 * 23 22 21 41 41 H 1.09005 * 109.47485 * 270.25658 * 25 24 22 42 42 H 1.09005 * 109.47142 * 30.25277 * 25 24 22 43 43 H 1.08993 * 109.47212 * 150.25859 * 25 24 22 44 44 H 1.08004 * 119.88072 * 179.86036 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1756 3.3369 -1.1885 8 1 3.9015 4.3774 -1.2810 9 6 4.7247 2.6641 -2.2732 10 7 4.5320 3.1152 -3.4924 11 14 5.7370 1.1183 -1.9985 12 1 4.8689 -0.0763 -2.1556 13 1 6.8381 1.0643 -2.9934 14 1 6.3086 1.1381 -0.6281 15 6 4.1732 3.3262 1.1659 16 8 4.0924 2.7218 2.2144 17 6 4.4877 4.8000 1.1681 18 1 5.3027 5.0204 0.4786 19 6 3.2323 5.6329 0.8168 20 6 3.4065 6.8511 1.7030 21 6 2.8144 8.0947 1.6924 22 6 3.1779 9.0415 2.6334 23 6 2.5326 10.4033 2.6244 24 6 4.1315 8.7318 3.5859 25 6 4.5269 9.7613 4.6130 26 6 4.7266 7.4876 3.5976 27 6 4.3654 6.5283 2.6545 28 8 4.8074 5.2507 2.4954 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.9556 0.7809 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 4.9157 2.6457 -4.2495 35 1 3.2333 5.9140 -0.2363 36 1 2.3215 5.0918 1.0731 37 1 2.0664 8.3306 0.9500 38 1 1.6419 10.3874 3.2524 39 1 3.2360 11.1412 3.0100 40 1 2.2531 10.6661 1.6041 41 1 5.3574 10.3552 4.2312 42 1 3.6782 10.4137 4.8189 43 1 4.8310 9.2599 5.5316 44 1 5.4721 7.2547 4.3435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080391585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:48 Heat of formation + Delta-G solvation = -125.445695 kcal Electronic energy + Delta-G solvation = -29159.776929 eV Core-core repulsion = 25042.902189 eV Total energy + Delta-G solvation = -4116.874740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49373 -41.67358 -40.40933 -38.99968 -37.62947 -36.86261 -34.33351 -34.10605 -33.01496 -32.23220 -30.48824 -28.36833 -27.77456 -27.56695 -26.68608 -24.22487 -23.05394 -22.68314 -21.55977 -21.10509 -19.53400 -19.02691 -18.75190 -17.95564 -17.83612 -17.47168 -17.23405 -16.85245 -16.66854 -16.02072 -15.69254 -15.35872 -15.13243 -14.91953 -14.73670 -14.68398 -14.38135 -14.33755 -14.18881 -13.71234 -13.69105 -13.51804 -13.46484 -13.11539 -13.03095 -13.01440 -12.85192 -12.73363 -12.41686 -12.22365 -11.95627 -11.86203 -11.81777 -11.77619 -11.57585 -11.23563 -10.70114 -10.07155 -9.72184 -8.94145 -8.60491 -6.27279 0.25846 0.36254 1.05036 1.11544 1.20902 1.35114 1.42795 1.57342 1.99982 2.10486 2.52446 2.70224 2.88342 3.38184 3.48550 3.75079 3.83889 3.87460 3.88898 3.97842 4.01352 4.13159 4.17514 4.26884 4.27820 4.30915 4.48940 4.61457 4.61598 4.67314 4.75059 4.81505 4.88527 4.92567 5.04668 5.08051 5.18273 5.22926 5.28155 5.36052 5.43563 5.61573 5.74587 5.89493 6.04632 6.19003 6.64646 6.75060 7.10076 7.42153 8.52232 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003571 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.863027 B = 7839.146919 C = 8481.813091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.451 3.549 4 O -0.520 6.520 5 C 0.099 3.901 6 N -0.445 5.445 7 C -0.360 4.360 8 H 0.095 0.905 9 C 0.036 3.964 10 N -0.879 5.879 11 Si 0.907 3.093 12 H -0.245 1.245 13 H -0.272 1.272 14 H -0.256 1.256 15 C 0.493 3.507 16 O -0.597 6.597 17 C 0.088 3.912 18 H 0.118 0.882 19 C -0.077 4.077 20 C -0.188 4.188 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.105 4.105 24 C -0.055 4.055 25 C -0.110 4.110 26 C -0.145 4.145 27 C 0.073 3.927 28 O -0.307 6.307 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.285 0.715 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 7.521 8.289 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.407 6.407 5 C -0.025 4.025 6 N -0.166 5.166 7 C -0.487 4.487 8 H 0.112 0.888 9 C -0.171 4.171 10 N -0.514 5.514 11 Si 0.730 3.270 12 H -0.170 1.170 13 H -0.198 1.198 14 H -0.180 1.180 15 C 0.283 3.717 16 O -0.481 6.481 17 C 0.029 3.971 18 H 0.135 0.865 19 C -0.114 4.114 20 C -0.189 4.189 21 C -0.091 4.091 22 C -0.118 4.118 23 C -0.161 4.161 24 C -0.055 4.055 25 C -0.166 4.166 26 C -0.164 4.164 27 C 0.028 3.972 28 O -0.221 6.221 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.212 7.351 8.729 11.855 hybrid contribution 0.125 -1.160 -0.778 1.402 sum -3.087 6.191 7.951 10.539 Atomic orbital electron populations 1.23579 0.74684 1.05974 1.02271 1.86482 1.25272 1.32158 1.84044 1.24485 0.92671 0.81795 0.71746 1.90599 1.67171 1.37438 1.45532 1.21490 0.87884 0.86928 1.06240 1.43220 1.58455 1.09196 1.05754 1.19122 1.43870 0.98391 0.87271 0.88754 1.25861 0.96137 1.00961 0.94120 1.69809 1.40387 1.42275 0.98909 0.86425 0.80273 0.80388 0.79905 1.17050 1.19817 1.17970 1.20172 0.79117 0.89210 0.83251 1.90557 1.56233 1.68917 1.32412 1.22833 0.99559 0.91981 0.82706 0.86460 1.21407 0.96403 0.92517 1.01112 1.20872 1.00910 0.96857 1.00220 1.20450 0.98970 0.90343 0.99290 1.20044 0.98605 0.97794 0.95314 1.20797 1.00834 0.90975 1.03489 1.19869 0.94857 0.93794 0.96959 1.20899 1.03122 0.96573 0.96008 1.20356 1.03970 0.91629 1.00397 1.20013 0.94724 0.84718 0.97717 1.86810 1.77239 1.25783 1.32223 0.92297 0.84024 0.92308 0.86816 0.85305 0.90474 0.87861 0.91320 0.84233 0.90173 0.89460 0.90903 0.89440 0.89173 0.90720 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -12.90 10.56 -51.37 -0.54 -13.45 16 3 C 0.45 19.65 8.02 71.24 0.57 20.22 16 4 O -0.52 -25.53 16.18 21.97 0.36 -25.17 16 5 C 0.10 4.35 4.84 85.64 0.41 4.76 16 6 N -0.44 -21.73 1.68 -639.60 -1.08 -22.81 16 7 C -0.36 -18.44 8.84 84.04 0.74 -17.69 16 8 H 0.09 5.07 5.80 -2.91 -0.02 5.05 16 9 C 0.04 1.80 5.32 84.93 0.45 2.26 16 10 N -0.88 -46.43 13.96 21.66 0.30 -46.13 16 11 Si 0.91 37.89 24.95 68.60 1.71 39.60 16 12 H -0.24 -9.33 6.67 99.48 0.66 -8.66 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 C 0.49 24.61 6.94 87.66 0.61 25.22 16 16 O -0.60 -32.20 16.14 15.08 0.24 -31.96 16 17 C 0.09 3.96 3.08 30.43 0.09 4.05 16 18 H 0.12 5.11 7.73 -2.39 -0.02 5.09 16 19 C -0.08 -3.18 5.95 30.73 0.18 -3.00 16 20 C -0.19 -6.89 6.27 -19.52 -0.12 -7.01 16 21 C -0.07 -2.13 9.70 22.18 0.22 -1.91 16 22 C -0.12 -2.81 5.89 -19.82 -0.12 -2.92 16 23 C -0.10 -1.58 9.19 71.24 0.65 -0.93 16 24 C -0.05 -1.32 5.87 -19.93 -0.12 -1.43 16 25 C -0.11 -1.63 9.18 71.24 0.65 -0.97 16 26 C -0.14 -4.42 9.70 22.45 0.22 -4.20 16 27 C 0.07 2.81 7.04 22.68 0.16 2.97 16 28 O -0.31 -13.82 10.40 -76.92 -0.80 -14.62 16 29 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 30 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 32 H 0.11 4.79 3.08 -2.39 -0.01 4.78 16 33 H 0.13 5.27 7.36 -2.39 -0.02 5.26 16 34 H 0.29 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.10 4.15 7.00 -2.39 -0.02 4.13 16 36 H 0.07 3.10 7.92 -2.39 -0.02 3.08 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.99 6.71 -2.39 -0.02 0.97 16 40 H 0.07 1.02 8.09 -2.38 -0.02 1.00 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 42 H 0.09 1.00 6.70 -2.38 -0.02 0.98 16 43 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 44 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -70.02 364.75 7.00 -63.02 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 1.00 Total: 30.17 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.81 Total: 21.34 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.78 Total: -68.94 kcal Atomic # 8 Polarization: -84.45 SS G_CDS: -0.74 Total: -85.20 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.71 Total: 39.60 kcal Total: -70.02 7.00 -63.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080391585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.423 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds