Wall clock time and date at job start Tue Mar 31 2020 17:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00183 * 2 1 4 4 O 1.20822 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.46932 * 86.11865 * 5 3 2 7 7 N 1.46500 * 109.47352 * 326.11218 * 5 3 2 8 8 C 1.34769 * 119.99986 * 174.37682 * 7 5 3 9 9 O 1.21596 * 120.00215 * 0.02562 * 8 7 5 10 10 C 1.47532 * 119.99919 * 180.02562 * 8 7 5 11 11 C 1.39666 * 120.19905 * 359.97438 * 10 8 7 12 12 C 1.37827 * 119.92009 * 179.97438 * 11 10 8 13 13 C 1.38574 * 120.32566 * 0.02562 * 12 11 10 14 14 C 1.38024 * 120.40125 * 0.02562 * 13 12 11 15 15 C 1.38840 * 120.06963 * 359.94813 * 14 13 12 16 16 O 1.35518 * 120.15576 * 180.02562 * 15 14 13 17 17 C 1.34809 * 117.00509 * 354.31226 * 16 15 14 18 18 H 1.08004 * 120.00003 * 5.06596 * 17 16 15 19 19 C 1.38701 * 120.00442 * 185.07452 * 17 16 15 20 20 N 1.31520 * 119.99318 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00447 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47031 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47228 * 119.99567 * 21 19 17 24 24 H 1.48504 * 109.47518 * 239.99941 * 21 19 17 25 25 C 1.53004 * 109.46620 * 206.11273 * 5 3 2 26 26 C 1.53001 * 117.49443 * 123.18517 * 25 5 3 27 27 C 1.53003 * 117.50151 * 54.52739 * 25 5 3 28 28 H 1.08997 * 109.47286 * 300.00315 * 1 2 3 29 29 H 1.09004 * 109.46987 * 60.00061 * 1 2 3 30 30 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46867 * 299.99358 * 6 5 3 32 32 H 1.08996 * 109.47751 * 59.99253 * 6 5 3 33 33 H 1.09000 * 109.46980 * 179.97438 * 6 5 3 34 34 H 0.96999 * 119.99914 * 354.37861 * 7 5 3 35 35 H 1.07999 * 120.04015 * 0.27703 * 11 10 8 36 36 H 1.08006 * 119.83465 * 180.02562 * 12 11 10 37 37 H 1.08003 * 119.79935 * 179.97438 * 13 12 11 38 38 H 1.07992 * 119.96634 * 179.97438 * 14 13 12 39 39 H 0.97005 * 119.99708 * 180.02562 * 20 19 17 40 40 H 1.08995 * 115.55224 * 268.84542 * 25 5 3 41 41 H 1.09004 * 117.50202 * 359.97438 * 26 25 5 42 42 H 1.09004 * 117.50165 * 145.02117 * 26 25 5 43 43 H 1.08994 * 117.49334 * 214.97541 * 27 25 5 44 44 H 1.08996 * 117.49840 * 359.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0813 1.2037 -1.4383 7 7 4.1137 0.1555 0.7711 8 6 5.4457 -0.0448 0.8151 9 8 6.1933 0.7038 0.2156 10 6 5.9969 -1.1723 1.5906 11 6 5.1422 -2.0344 2.2812 12 6 5.6633 -3.0862 3.0035 13 6 7.0327 -3.2934 3.0490 14 6 7.8897 -2.4491 2.3724 15 6 7.3826 -1.3847 1.6392 16 8 8.2224 -0.5549 0.9738 17 6 9.5442 -0.7449 1.1584 18 1 9.8926 -1.5808 1.7471 19 6 10.4568 0.1330 0.5926 20 7 10.0326 1.1506 -0.1245 21 14 12.2883 -0.1299 0.8489 22 1 12.5026 -1.3371 1.6869 23 1 12.9504 -0.3177 -0.4669 24 1 12.8681 1.0555 1.5302 25 6 4.0075 2.5952 0.6354 26 6 4.9481 2.5203 1.8399 27 6 3.4824 2.9158 2.0363 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.7669 0.2630 -1.8906 32 1 3.6740 2.0364 -2.0117 33 1 5.1697 1.2612 -1.4380 34 1 3.5175 -0.4414 1.2497 35 1 4.0739 -1.8798 2.2453 36 1 5.0010 -3.7522 3.5367 37 1 7.4319 -4.1201 3.6179 38 1 8.9557 -2.6168 2.4129 39 1 10.6708 1.7644 -0.5206 40 1 4.1398 3.4279 -0.0553 41 1 5.2522 1.5304 2.1803 42 1 5.6987 3.3041 1.9418 43 1 3.2695 3.9595 2.2671 44 1 2.8223 2.1863 2.5055 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130072239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:43 Heat of formation + Delta-G solvation = -90.215031 kcal Electronic energy + Delta-G solvation = -29835.435504 eV Core-core repulsion = 25720.088480 eV Total energy + Delta-G solvation = -4115.347024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.37942 -41.16519 -40.15288 -38.30376 -37.90292 -37.29907 -35.30829 -34.27421 -32.95856 -31.01424 -30.50835 -28.81534 -27.34015 -26.16670 -24.54757 -23.63274 -23.19523 -23.06508 -21.60502 -20.51998 -19.85263 -19.58645 -18.70267 -18.12732 -17.71355 -17.22354 -17.01393 -16.44102 -16.19154 -16.07689 -15.79660 -15.58628 -15.31434 -15.05427 -14.78793 -14.44709 -14.40594 -14.17467 -13.67114 -13.58756 -13.51539 -13.32190 -12.98131 -12.95278 -12.71814 -12.60870 -12.53180 -12.35625 -12.29773 -12.08680 -11.83575 -11.72268 -11.41311 -11.31015 -11.22450 -10.80144 -10.32724 -10.15880 -9.78213 -8.99371 -8.40623 -6.10137 0.16473 0.76735 0.88233 1.34944 1.44381 1.45059 1.53288 2.09115 2.14906 2.17992 2.82498 2.91932 3.26300 3.43830 3.50258 3.63336 3.75395 3.94942 4.04007 4.06144 4.11500 4.28734 4.32020 4.36356 4.37923 4.51403 4.56584 4.62988 4.67109 4.71422 4.74659 4.92339 5.01398 5.04832 5.11220 5.13378 5.14521 5.17739 5.25136 5.41991 5.52402 5.64164 5.73746 5.99829 6.19914 6.51788 6.66280 6.99454 7.51517 7.84225 8.79032 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.004002 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.823477 B = 6995.305938 C = 8217.790535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.480 3.520 4 O -0.503 6.503 5 C 0.229 3.771 6 C -0.162 4.162 7 N -0.715 5.715 8 C 0.563 3.437 9 O -0.532 6.532 10 C -0.242 4.242 11 C -0.032 4.032 12 C -0.201 4.201 13 C -0.041 4.041 14 C -0.258 4.258 15 C 0.154 3.846 16 O -0.182 6.182 17 C -0.425 4.425 18 H 0.104 0.896 19 C -0.017 4.017 20 N -0.899 5.899 21 Si 1.016 2.984 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.145 4.145 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.412 0.588 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.269 0.731 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -6.146 4.901 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.321 3.679 4 O -0.390 6.390 5 C 0.141 3.859 6 C -0.220 4.220 7 N -0.373 5.373 8 C 0.353 3.647 9 O -0.409 6.409 10 C -0.247 4.247 11 C -0.050 4.050 12 C -0.219 4.219 13 C -0.059 4.059 14 C -0.278 4.278 15 C 0.099 3.901 16 O -0.084 6.084 17 C -0.501 4.501 18 H 0.121 0.879 19 C -0.217 4.217 20 N -0.534 5.534 21 Si 0.835 3.165 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.175 4.175 26 C -0.203 4.203 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.416 -4.934 4.165 18.574 hybrid contribution 0.868 0.122 -0.115 0.884 sum -16.548 -4.812 4.051 17.703 Atomic orbital electron populations 1.23670 0.73949 1.06139 1.02927 1.86513 1.25596 1.31814 1.83238 1.23235 0.90408 0.82093 0.72141 1.90663 1.66273 1.36898 1.45148 1.19451 0.84988 0.87152 0.94291 1.22211 1.04190 1.03367 0.92216 1.45703 1.06702 1.31158 1.53776 1.18156 0.81697 0.84280 0.80549 1.90931 1.58786 1.46796 1.44370 1.19235 0.90958 1.02940 1.11587 1.21291 0.99077 0.92217 0.92461 1.21138 0.95078 1.00812 1.04916 1.21407 0.93712 0.96545 0.94229 1.21295 1.01226 0.99103 1.06144 1.20000 0.90576 0.89903 0.89668 1.84164 1.16939 1.49644 1.57663 1.21997 0.79201 1.13686 1.35174 0.87876 1.26604 1.05424 0.94301 0.95386 1.70310 1.36739 1.14557 1.31825 0.84580 0.73914 0.79228 0.78762 1.17071 1.19542 1.19602 1.22387 1.06031 0.96913 0.92180 1.22895 0.93468 1.02354 1.01548 1.22997 0.95369 1.03127 0.96659 0.91284 0.91783 0.84660 0.90764 0.89984 0.90606 0.74938 0.82706 0.82123 0.83139 0.86064 0.92193 0.86851 0.90039 0.90175 0.87134 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -7.30 9.80 -51.42 -0.50 -7.81 16 3 C 0.48 12.43 6.24 71.24 0.44 12.87 16 4 O -0.50 -14.44 15.64 21.98 0.34 -14.10 16 5 C 0.23 6.97 0.84 2.86 0.00 6.97 16 6 C -0.16 -5.23 8.25 71.98 0.59 -4.64 16 7 N -0.71 -22.14 4.38 -429.46 -1.88 -24.02 16 8 C 0.56 23.51 4.88 86.70 0.42 23.93 16 9 O -0.53 -28.07 11.25 16.88 0.19 -27.88 16 10 C -0.24 -9.98 5.89 -19.99 -0.12 -10.09 16 11 C -0.03 -0.93 9.53 22.52 0.21 -0.72 16 12 C -0.20 -5.21 10.02 22.25 0.22 -4.98 16 13 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 14 C -0.26 -10.71 9.16 22.36 0.20 -10.51 16 15 C 0.15 7.59 6.66 22.91 0.15 7.74 16 16 O -0.18 -11.06 7.84 0.91 0.01 -11.05 16 17 C -0.42 -24.94 9.49 67.93 0.64 -24.30 16 18 H 0.10 5.49 5.21 -2.91 -0.02 5.47 16 19 C -0.02 -1.00 5.49 84.85 0.47 -0.54 16 20 N -0.90 -57.04 13.67 21.62 0.30 -56.75 16 21 Si 1.02 43.55 29.55 68.60 2.03 45.58 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C -0.16 -5.06 4.36 -10.79 -0.05 -5.11 16 26 C -0.17 -5.97 8.43 30.62 0.26 -5.71 16 27 C -0.14 -4.02 9.38 30.62 0.29 -3.73 16 28 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 30 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 3.14 5.77 -2.39 -0.01 3.12 16 34 H 0.41 9.99 6.00 -92.71 -0.56 9.44 16 35 H 0.16 3.12 6.40 -2.91 -0.02 3.10 16 36 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 39 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 40 H 0.11 3.69 8.07 -2.39 -0.02 3.67 16 41 H 0.08 3.29 5.10 -2.39 -0.01 3.28 16 42 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 Total: -1.00 -81.12 364.26 6.15 -74.97 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.50 Total: 39.35 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 5.17 Total: -18.30 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -1.59 Total: -80.77 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: 0.04 Total: -60.84 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -81.12 6.15 -74.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130072239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.243 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds