Wall clock time and date at job start Tue Mar 31 2020 18:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 H 1.08996 * 109.47074 * 305.00209 * 3 2 1 5 5 N 1.46506 * 109.46847 * 65.00093 * 3 2 1 6 6 C 1.34770 * 119.99829 * 274.99841 * 5 3 2 7 7 O 1.21724 * 120.00466 * 0.02562 * 6 5 3 8 8 C 1.46255 * 119.99874 * 179.97438 * 6 5 3 9 9 C 1.35030 * 120.00069 * 180.02562 * 8 6 5 10 10 C 1.46958 * 119.99787 * 180.02562 * 9 8 6 11 11 C 1.40022 * 120.10591 * 359.72456 * 10 9 8 12 12 C 1.37600 * 119.89884 * 179.69782 * 11 10 9 13 13 C 1.39171 * 120.09797 * 0.60251 * 12 11 10 14 14 O 1.35573 * 119.89549 * 179.69689 * 13 12 11 15 15 C 1.34780 * 116.99999 * 174.42093 * 14 13 12 16 16 H 1.07998 * 120.00351 * 5.05495 * 15 14 13 17 17 C 1.38722 * 120.00160 * 185.05710 * 15 14 13 18 18 N 1.31507 * 119.99651 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00286 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47020 * 89.99742 * 19 17 15 21 21 H 1.48496 * 109.47225 * 210.00202 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00065 * 19 17 15 23 23 C 1.39173 * 120.20826 * 359.67000 * 13 12 11 24 24 C 1.37596 * 120.10015 * 0.02736 * 23 13 12 25 25 C 1.50700 * 109.47270 * 184.99896 * 3 2 1 26 26 O 1.20827 * 119.99907 * 240.00258 * 25 3 2 27 27 O 1.34231 * 119.99813 * 60.00468 * 25 3 2 28 28 C 1.45204 * 116.99793 * 180.02562 * 27 25 3 29 29 H 1.09004 * 109.47276 * 299.99769 * 1 2 3 30 30 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 59.99446 * 1 2 3 32 32 H 1.09003 * 109.47677 * 120.00242 * 2 1 3 33 33 H 1.09004 * 109.47276 * 240.00230 * 2 1 3 34 34 H 0.96997 * 120.00210 * 95.00119 * 5 3 2 35 35 H 1.08004 * 120.00386 * 0.02562 * 8 6 5 36 36 H 1.08000 * 120.00023 * 0.02562 * 9 8 6 37 37 H 1.08007 * 120.04668 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.94837 * 180.27550 * 12 11 10 39 39 H 0.97005 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.95441 * 180.02562 * 23 13 12 41 41 H 1.07998 * 120.05691 * 180.02562 * 24 23 13 42 42 H 1.09003 * 109.46735 * 299.99648 * 28 27 25 43 43 H 1.09001 * 109.47131 * 59.99613 * 28 27 25 44 44 H 1.09000 * 109.46929 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2519 6 6 0.4352 2.6644 1.3670 7 8 -0.3424 2.6319 0.4311 8 6 0.0481 3.3177 2.6169 9 6 -1.1716 3.8853 2.7325 10 6 -1.5603 4.5423 3.9883 11 6 -0.6698 4.5759 5.0683 12 6 -1.0358 5.1976 6.2400 13 6 -2.2937 5.7815 6.3569 14 8 -2.6523 6.3876 7.5153 15 6 -3.8353 7.0333 7.5273 16 1 -4.4868 6.9829 6.6675 17 6 -4.2160 7.7628 8.6441 18 7 -3.4224 7.8247 9.6909 19 14 -5.8559 8.6572 8.6611 20 1 -6.9059 7.7556 9.1994 21 1 -5.7524 9.8646 9.5194 22 1 -6.2130 9.0624 7.2778 23 6 -3.1844 5.7456 5.2881 24 6 -2.8247 5.1315 4.1104 25 6 3.5419 1.4442 -0.1238 26 8 4.2191 1.9416 0.7445 27 8 4.1273 0.8933 -1.1988 28 6 5.5780 0.9306 -1.2510 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.2719 2.1231 1.9979 35 1 0.7378 3.3462 3.4476 36 1 -1.8615 3.8564 1.9021 37 1 0.3047 4.1184 4.9802 38 1 -0.3478 5.2279 7.0720 39 1 -3.6888 8.3345 10.4721 40 1 -4.1593 6.2003 5.3831 41 1 -3.5163 5.1045 3.2814 42 1 5.9157 1.9668 -1.2324 43 1 5.9862 0.3999 -0.3909 44 1 5.9209 0.4527 -2.1687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176186787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:21 Heat of formation + Delta-G solvation = -109.936880 kcal Electronic energy + Delta-G solvation = -26803.666782 eV Core-core repulsion = 22687.464554 eV Total energy + Delta-G solvation = -4116.202228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.19606 -39.71336 -39.15150 -37.13224 -36.87627 -35.69734 -33.28782 -32.58244 -32.16147 -30.43575 -29.24883 -28.27967 -26.95868 -25.66090 -23.45412 -22.59649 -22.19290 -21.24779 -20.61521 -19.58340 -18.40043 -17.86096 -17.52751 -17.14289 -16.92488 -16.63412 -15.86864 -15.46960 -14.89918 -14.80365 -14.45637 -14.15862 -14.09793 -13.86015 -13.82185 -13.54567 -13.28460 -13.04900 -12.86963 -12.62430 -12.59524 -12.20487 -11.95366 -11.79577 -11.75079 -11.73096 -11.29047 -11.15624 -11.11542 -11.08617 -10.81974 -10.68839 -10.54524 -9.87769 -9.61465 -9.50183 -9.30130 -8.86906 -8.38783 -7.12776 -6.65925 -4.20703 1.03216 1.68317 2.03184 2.13269 2.52765 3.03286 3.04343 3.09267 3.15253 3.51664 3.81657 4.16008 4.49132 4.52700 4.65442 4.66498 4.74917 4.91071 4.92435 5.04034 5.06069 5.12125 5.24100 5.28078 5.49186 5.52577 5.61067 5.66267 5.72263 5.82419 5.89118 6.00685 6.10479 6.15897 6.25933 6.43388 6.46443 6.60171 6.78326 6.90952 7.12230 7.20415 7.22785 7.26924 7.43996 7.63301 7.79367 8.22398 8.78770 9.45721 10.50614 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.001743 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.955371 B =16063.971092 C =16668.427614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.127 0.873 5 N -0.721 5.721 6 C 0.563 3.437 7 O -0.550 6.550 8 C -0.284 4.284 9 C 0.043 3.957 10 C -0.201 4.201 11 C -0.042 4.042 12 C -0.200 4.200 13 C 0.167 3.833 14 O -0.162 6.162 15 C -0.393 4.393 16 H 0.098 0.902 17 C 0.042 3.958 18 N -0.851 5.851 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.265 1.265 23 C -0.243 4.243 24 C -0.034 4.034 25 C 0.460 3.540 26 O -0.500 6.500 27 O -0.354 6.354 28 C 0.035 3.965 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.410 0.590 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.274 0.726 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -13.436 -18.553 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.144 0.856 5 N -0.376 5.376 6 C 0.357 3.643 7 O -0.430 6.430 8 C -0.305 4.305 9 C 0.023 3.977 10 C -0.202 4.202 11 C -0.060 4.060 12 C -0.219 4.219 13 C 0.111 3.889 14 O -0.063 6.063 15 C -0.469 4.469 16 H 0.115 0.885 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.769 3.231 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.262 4.262 24 C -0.052 4.052 25 C 0.301 3.699 26 O -0.387 6.387 27 O -0.269 6.269 28 C -0.059 4.059 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.399 -13.158 -18.468 25.380 hybrid contribution -0.116 0.524 0.480 0.720 sum 11.284 -12.634 -17.988 24.708 Atomic orbital electron populations 1.21809 0.93339 1.01225 1.03836 1.21924 0.98378 0.93045 1.03259 1.20410 0.86280 0.97016 0.91209 0.85578 1.45706 1.17848 1.58957 1.15112 1.18336 0.80347 0.77020 0.88642 1.90794 1.51215 1.60049 1.40910 1.22356 1.00142 1.10474 0.97556 1.22285 0.93986 0.86623 0.94756 1.18452 0.96706 1.10439 0.94571 1.20899 0.97790 0.95612 0.91717 1.20157 0.95666 1.06785 0.99283 1.19617 0.92494 0.90804 0.86011 1.83903 1.37280 1.57195 1.27887 1.21483 0.93357 1.28602 1.03436 0.88511 1.25401 0.99929 0.96688 0.94452 1.70015 1.36181 1.37788 1.04406 0.85643 0.79670 0.78757 0.79034 1.19624 1.20044 1.18940 1.21098 1.01870 1.08823 0.94395 1.20988 0.94328 0.93568 0.96343 1.23835 0.92031 0.74437 0.79557 1.90689 1.65511 1.42029 1.40464 1.86494 1.24383 1.72637 1.43407 1.23337 0.75848 1.03109 1.03609 0.91762 0.92940 0.91697 0.91255 0.89878 0.75375 0.85769 0.85818 0.86364 0.86118 0.91582 0.85113 0.86789 0.91663 0.91670 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.51 37.15 0.32 -1.08 16 2 C -0.13 -1.03 5.57 -26.73 -0.15 -1.18 16 3 C 0.16 1.49 2.77 -69.08 -0.19 1.30 16 4 H 0.13 1.24 7.58 -51.93 -0.39 0.85 16 5 N -0.72 -7.73 4.90 -56.38 -0.28 -8.01 16 6 C 0.56 7.38 6.30 -13.04 -0.08 7.29 16 7 O -0.55 -8.36 13.36 5.17 0.07 -8.29 16 8 C -0.28 -3.78 9.41 -37.50 -0.35 -4.13 16 9 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 10 C -0.20 -3.36 5.87 -105.02 -0.62 -3.98 16 11 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 12 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 13 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 14 O -0.16 -4.38 9.74 0.74 0.01 -4.38 16 15 C -0.39 -10.42 9.48 30.91 0.29 -10.12 16 16 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.85 -23.78 13.67 55.48 0.76 -23.02 16 19 Si 0.95 19.46 29.55 -169.99 -5.02 14.44 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.24 -4.98 9.14 -39.47 -0.36 -5.34 16 24 C -0.03 -0.59 9.78 -39.14 -0.38 -0.98 16 25 C 0.46 4.44 7.32 36.01 0.26 4.70 16 26 O -0.50 -5.96 15.59 -18.75 -0.29 -6.25 16 27 O -0.35 -2.87 10.37 -39.26 -0.41 -3.27 16 28 C 0.03 0.19 10.56 101.05 1.07 1.26 16 29 H 0.06 0.76 5.64 -51.93 -0.29 0.47 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.67 7.84 -51.93 -0.41 0.27 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.55 8.00 -51.93 -0.42 0.14 16 34 H 0.41 4.05 7.77 -40.82 -0.32 3.73 16 35 H 0.12 1.47 6.07 -52.48 -0.32 1.16 16 36 H 0.12 1.76 7.52 -52.49 -0.39 1.37 16 37 H 0.12 1.65 6.16 -52.48 -0.32 1.33 16 38 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.13 2.66 5.62 -52.49 -0.29 2.36 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 43 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 44 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -30.98 376.70 -6.67 -37.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.52 Total: 8.34 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.66 Total: -12.89 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.48 Total: -31.03 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.62 Total: -22.19 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.98 -6.67 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176186787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.282 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds