Wall clock time and date at job start Tue Mar 31 2020 18:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 H 1.08996 * 109.47074 * 305.00209 * 3 2 1 5 5 N 1.46506 * 109.46847 * 65.00093 * 3 2 1 6 6 C 1.34770 * 119.99829 * 274.99841 * 5 3 2 7 7 O 1.21724 * 120.00466 * 0.02562 * 6 5 3 8 8 C 1.46255 * 119.99874 * 179.97438 * 6 5 3 9 9 C 1.35030 * 120.00069 * 180.02562 * 8 6 5 10 10 C 1.46958 * 119.99787 * 180.02562 * 9 8 6 11 11 C 1.40022 * 120.10591 * 359.72456 * 10 9 8 12 12 C 1.37600 * 119.89884 * 179.69782 * 11 10 9 13 13 C 1.39171 * 120.09797 * 0.60251 * 12 11 10 14 14 O 1.35573 * 119.89549 * 179.69689 * 13 12 11 15 15 C 1.34780 * 116.99999 * 174.42093 * 14 13 12 16 16 H 1.07998 * 120.00351 * 5.05495 * 15 14 13 17 17 C 1.38722 * 120.00160 * 185.05710 * 15 14 13 18 18 N 1.31507 * 119.99651 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00286 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47020 * 89.99742 * 19 17 15 21 21 H 1.48496 * 109.47225 * 210.00202 * 19 17 15 22 22 H 1.48501 * 109.46866 * 330.00065 * 19 17 15 23 23 C 1.39173 * 120.20826 * 359.67000 * 13 12 11 24 24 C 1.37596 * 120.10015 * 0.02736 * 23 13 12 25 25 C 1.50700 * 109.47270 * 184.99896 * 3 2 1 26 26 O 1.20827 * 119.99907 * 240.00258 * 25 3 2 27 27 O 1.34231 * 119.99813 * 60.00468 * 25 3 2 28 28 C 1.45204 * 116.99793 * 180.02562 * 27 25 3 29 29 H 1.09004 * 109.47276 * 299.99769 * 1 2 3 30 30 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47018 * 59.99446 * 1 2 3 32 32 H 1.09003 * 109.47677 * 120.00242 * 2 1 3 33 33 H 1.09004 * 109.47276 * 240.00230 * 2 1 3 34 34 H 0.96997 * 120.00210 * 95.00119 * 5 3 2 35 35 H 1.08004 * 120.00386 * 0.02562 * 8 6 5 36 36 H 1.08000 * 120.00023 * 0.02562 * 9 8 6 37 37 H 1.08007 * 120.04668 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.94837 * 180.27550 * 12 11 10 39 39 H 0.97005 * 119.99892 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.95441 * 180.02562 * 23 13 12 41 41 H 1.07998 * 120.05691 * 180.02562 * 24 23 13 42 42 H 1.09003 * 109.46735 * 299.99648 * 28 27 25 43 43 H 1.09001 * 109.47131 * 59.99613 * 28 27 25 44 44 H 1.09000 * 109.46929 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2519 6 6 0.4352 2.6644 1.3670 7 8 -0.3424 2.6319 0.4311 8 6 0.0481 3.3177 2.6169 9 6 -1.1716 3.8853 2.7325 10 6 -1.5603 4.5423 3.9883 11 6 -0.6698 4.5759 5.0683 12 6 -1.0358 5.1976 6.2400 13 6 -2.2937 5.7815 6.3569 14 8 -2.6523 6.3876 7.5153 15 6 -3.8353 7.0333 7.5273 16 1 -4.4868 6.9829 6.6675 17 6 -4.2160 7.7628 8.6441 18 7 -3.4224 7.8247 9.6909 19 14 -5.8559 8.6572 8.6611 20 1 -6.9059 7.7556 9.1994 21 1 -5.7524 9.8646 9.5194 22 1 -6.2130 9.0624 7.2778 23 6 -3.1844 5.7456 5.2881 24 6 -2.8247 5.1315 4.1104 25 6 3.5419 1.4442 -0.1238 26 8 4.2191 1.9416 0.7445 27 8 4.1273 0.8933 -1.1988 28 6 5.5780 0.9306 -1.2510 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.2719 2.1231 1.9979 35 1 0.7378 3.3462 3.4476 36 1 -1.8615 3.8564 1.9021 37 1 0.3047 4.1184 4.9802 38 1 -0.3478 5.2279 7.0720 39 1 -3.6888 8.3345 10.4721 40 1 -4.1593 6.2003 5.3831 41 1 -3.5163 5.1045 3.2814 42 1 5.9157 1.9668 -1.2324 43 1 5.9862 0.3999 -0.3909 44 1 5.9209 0.4527 -2.1687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176186787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:20 Heat of formation + Delta-G solvation = -128.854325 kcal Electronic energy + Delta-G solvation = -26804.487103 eV Core-core repulsion = 22687.464554 eV Total energy + Delta-G solvation = -4117.022549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97538 -40.89999 -40.57973 -38.53695 -37.78293 -36.59457 -34.73809 -34.06565 -33.28765 -31.96263 -30.10003 -29.46114 -27.77498 -27.37747 -24.72153 -23.71813 -23.30340 -22.40806 -21.52530 -20.83622 -19.88328 -18.95252 -18.79270 -18.30186 -17.83352 -17.50890 -16.77531 -16.50450 -16.34916 -16.20788 -15.94875 -15.61370 -15.33659 -14.97739 -14.72227 -14.60439 -14.54976 -14.17734 -14.10431 -13.60805 -13.56385 -13.32921 -13.26680 -13.14458 -12.81460 -12.70405 -12.62490 -12.46856 -12.20070 -12.12742 -11.92601 -11.83068 -11.59622 -11.21132 -11.09859 -10.98403 -10.56241 -10.21004 -9.88910 -8.68383 -8.52034 -6.18280 -0.24981 0.58940 0.93693 1.12225 1.34803 1.36050 1.46369 1.53326 2.15507 2.26642 2.36916 2.86669 3.18146 3.42483 3.47854 3.75433 3.84099 3.95224 3.96218 4.09174 4.26496 4.29112 4.32581 4.35181 4.41359 4.47652 4.52985 4.66596 4.71641 4.82688 4.94856 5.02397 5.02803 5.08235 5.19601 5.20156 5.25784 5.31731 5.36628 5.47413 5.58561 5.64108 5.82067 5.97489 6.11015 6.44330 6.51973 6.92267 7.19301 7.69542 8.70023 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.029718 B = 0.001743 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.955371 B =16063.971092 C =16668.427614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.156 3.844 4 H 0.124 0.876 5 N -0.711 5.711 6 C 0.562 3.438 7 O -0.568 6.568 8 C -0.250 4.250 9 C 0.023 3.977 10 C -0.172 4.172 11 C -0.039 4.039 12 C -0.209 4.209 13 C 0.130 3.870 14 O -0.220 6.220 15 C -0.417 4.417 16 H 0.106 0.894 17 C -0.019 4.019 18 N -0.914 5.914 19 Si 1.019 2.981 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.252 1.252 23 C -0.249 4.249 24 C -0.038 4.038 25 C 0.466 3.534 26 O -0.526 6.526 27 O -0.353 6.353 28 C 0.027 3.973 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.275 0.725 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 -15.493 -22.089 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.049 3.951 4 H 0.142 0.858 5 N -0.365 5.365 6 C 0.354 3.646 7 O -0.450 6.450 8 C -0.271 4.271 9 C 0.004 3.996 10 C -0.172 4.172 11 C -0.056 4.056 12 C -0.228 4.228 13 C 0.078 3.922 14 O -0.125 6.125 15 C -0.493 4.493 16 H 0.124 0.876 17 C -0.218 4.218 18 N -0.551 5.551 19 Si 0.838 3.162 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.268 4.268 24 C -0.056 4.056 25 C 0.309 3.691 26 O -0.415 6.415 27 O -0.268 6.268 28 C -0.066 4.066 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.165 0.835 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.628 -15.271 -22.084 29.671 hybrid contribution -0.092 0.774 1.036 1.296 sum 12.536 -14.498 -21.048 28.467 Atomic orbital electron populations 1.21750 0.94362 1.01604 1.02177 1.21897 0.97226 0.92180 1.04598 1.20517 0.86469 0.97752 0.90333 0.85818 1.45622 1.17084 1.57946 1.15893 1.18293 0.80872 0.77180 0.88268 1.90805 1.51962 1.60686 1.41517 1.22683 0.99500 1.06974 0.97927 1.22181 0.95116 0.88277 0.94059 1.18793 0.95833 1.07564 0.95055 1.21287 0.99385 0.94617 0.90350 1.20412 0.94836 1.06893 1.00639 1.20187 0.94205 0.91617 0.86212 1.83886 1.38220 1.60296 1.30133 1.21912 0.93876 1.29335 1.04166 0.87626 1.26623 1.03912 0.97406 0.93816 1.70153 1.38887 1.40495 1.05542 0.84578 0.74691 0.77375 0.79556 1.18729 1.19619 1.17561 1.21211 1.01445 1.09218 0.94961 1.21332 0.95437 0.92710 0.96083 1.23757 0.91883 0.73916 0.79509 1.90684 1.66044 1.43304 1.41442 1.86485 1.25932 1.71974 1.42432 1.23634 0.74224 1.03389 1.05322 0.93959 0.91612 0.92694 0.90565 0.87901 0.74643 0.83731 0.85031 0.82561 0.86133 0.91612 0.85684 0.83499 0.92000 0.91525 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.51 71.98 0.61 -1.76 16 2 C -0.12 -1.58 5.57 30.59 0.17 -1.41 16 3 C 0.16 2.51 2.77 44.24 0.12 2.63 16 4 H 0.12 2.12 7.58 -2.39 -0.02 2.10 16 5 N -0.71 -12.99 4.90 -450.48 -2.21 -15.20 16 6 C 0.56 12.82 6.30 86.33 0.54 13.37 16 7 O -0.57 -15.71 13.36 -4.43 -0.06 -15.77 16 8 C -0.25 -5.59 9.41 23.62 0.22 -5.37 16 9 C 0.02 0.60 9.45 23.82 0.23 0.82 16 10 C -0.17 -5.26 5.87 -20.13 -0.12 -5.38 16 11 C -0.04 -1.22 9.40 22.55 0.21 -1.01 16 12 C -0.21 -8.41 9.97 22.34 0.22 -8.19 16 13 C 0.13 6.21 6.66 22.72 0.15 6.36 16 14 O -0.22 -12.81 9.74 -20.28 -0.20 -13.00 16 15 C -0.42 -23.50 9.48 67.94 0.64 -22.85 16 16 H 0.11 5.42 5.18 -2.91 -0.02 5.40 16 17 C -0.02 -1.04 5.49 84.86 0.47 -0.57 16 18 N -0.91 -54.57 13.67 21.62 0.30 -54.27 16 19 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 23 C -0.25 -10.38 9.14 22.34 0.20 -10.18 16 24 C -0.04 -1.25 9.78 22.55 0.22 -1.03 16 25 C 0.47 7.77 7.32 71.24 0.52 8.29 16 26 O -0.53 -11.29 15.59 21.96 0.34 -10.95 16 27 O -0.35 -4.70 10.37 -51.42 -0.53 -5.24 16 28 C 0.03 0.22 10.56 113.37 1.20 1.42 16 29 H 0.04 0.89 5.64 -2.38 -0.01 0.88 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.02 7.84 -2.39 -0.02 1.01 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.99 8.00 -2.38 -0.02 0.97 16 34 H 0.42 6.78 7.77 -92.71 -0.72 6.06 16 35 H 0.15 2.66 6.07 -2.91 -0.02 2.64 16 36 H 0.13 3.27 7.52 -2.91 -0.02 3.24 16 37 H 0.16 3.69 6.16 -2.91 -0.02 3.67 16 38 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 40 H 0.13 5.26 5.62 -2.91 -0.02 5.24 16 41 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 42 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 43 H 0.07 0.55 8.13 -2.39 -0.02 0.53 16 44 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -72.45 376.70 5.61 -66.84 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.33 Total: 28.92 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 5.62 Total: -24.86 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -1.91 Total: -69.47 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.45 Total: -44.96 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -72.45 5.61 -66.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176186787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.014 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds