Wall clock time and date at job start Tue Mar 31 2020 17:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00335 * 2 1 4 4 O 1.20823 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00252 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99415 * 269.99623 * 6 5 3 8 8 H 1.08003 * 119.99264 * 141.14486 * 7 6 5 9 9 C 1.38946 * 120.00599 * 321.13963 * 7 6 5 10 10 N 1.31409 * 120.00294 * 157.18356 * 9 7 6 11 11 Si 1.86799 * 119.99868 * 337.18317 * 9 7 6 12 12 H 1.48497 * 109.47301 * 94.46545 * 11 9 7 13 13 H 1.48494 * 109.47259 * 214.46877 * 11 9 7 14 14 H 1.48508 * 109.47139 * 334.46803 * 11 9 7 15 15 C 1.34771 * 120.00287 * 89.99662 * 6 5 3 16 16 O 1.21298 * 119.99548 * 4.56217 * 15 6 5 17 17 C 1.50696 * 120.00203 * 184.56382 * 15 6 5 18 18 H 1.08999 * 110.83412 * 40.82910 * 17 15 6 19 19 C 1.54707 * 110.94128 * 277.11529 * 17 15 6 20 20 O 1.43771 * 102.78947 * 267.11822 * 19 17 15 21 21 C 1.36129 * 109.26072 * 332.33177 * 20 19 17 22 22 C 1.39284 * 129.88964 * 198.46133 * 21 20 19 23 23 C 1.37926 * 120.24567 * 180.60559 * 22 21 20 24 24 C 1.50702 * 119.82281 * 180.02562 * 23 22 21 25 25 C 1.38280 * 120.35003 * 0.32258 * 23 22 21 26 26 C 1.50709 * 120.11478 * 179.56955 * 25 23 22 27 27 C 1.38353 * 119.76905 * 359.35088 * 25 23 22 28 28 C 1.37745 * 119.97392 * 0.46606 * 27 25 23 29 29 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46878 * 299.99789 * 1 2 3 31 31 H 1.08997 * 109.47002 * 59.99748 * 1 2 3 32 32 H 1.08998 * 109.47280 * 59.99479 * 5 3 2 33 33 H 1.09006 * 109.47058 * 299.99866 * 5 3 2 34 34 H 0.96994 * 120.00028 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.74825 * 148.79295 * 19 17 15 36 36 H 1.08998 * 110.74667 * 25.44302 * 19 17 15 37 37 H 1.08004 * 119.87524 * 0.58150 * 22 21 20 38 38 H 1.08996 * 109.47114 * 90.00231 * 24 23 22 39 39 H 1.09005 * 109.46927 * 209.99724 * 24 23 22 40 40 H 1.08995 * 109.47415 * 330.00177 * 24 23 22 41 41 H 1.08995 * 109.46992 * 90.00484 * 26 25 23 42 42 H 1.09006 * 109.46461 * 210.00238 * 26 25 23 43 43 H 1.08991 * 109.47024 * 330.00023 * 26 25 23 44 44 H 1.07997 * 120.01402 * 180.18597 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1757 3.3376 -1.1869 8 1 3.8684 4.3679 -1.2895 9 6 4.7677 2.6792 -2.2577 10 7 4.5634 3.1037 -3.4844 11 14 5.8541 1.1903 -1.9535 12 1 5.0447 -0.0479 -2.0832 13 1 6.9548 1.1688 -2.9500 14 1 6.4265 1.2664 -0.5853 15 6 4.1734 3.3251 1.1676 16 8 4.0827 2.7219 2.2161 17 6 4.5001 4.7962 1.1705 18 1 3.9045 5.3271 0.4278 19 6 6.0116 5.0274 0.9349 20 8 6.5358 5.0923 2.2721 21 6 5.5642 5.5399 3.1141 22 6 5.6706 6.0844 4.3916 23 6 4.5384 6.4657 5.0809 24 6 4.6646 7.0543 6.4624 25 6 3.2877 6.3050 4.5134 26 6 2.0534 6.7145 5.2751 27 6 3.1736 5.7713 3.2420 28 6 4.3033 5.3933 2.5505 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.9558 0.7808 -0.8908 33 1 3.9565 0.7805 0.8892 34 1 4.9763 2.6439 -4.2319 35 1 6.1811 5.9662 0.4077 36 1 6.4494 4.1920 0.3887 37 1 6.6433 6.2081 4.8444 38 1 4.7640 8.1372 6.3882 39 1 3.7757 6.8101 7.0440 40 1 5.5454 6.6415 6.9542 41 1 1.8186 7.7556 5.0537 42 1 1.2167 6.0821 4.9780 43 1 2.2323 6.6018 6.3443 44 1 2.1990 5.6468 2.7938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185969804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:29 Heat of formation + Delta-G solvation = -107.586539 kcal Electronic energy + Delta-G solvation = -29617.394402 eV Core-core repulsion = 25501.294093 eV Total energy + Delta-G solvation = -4116.100309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05680 -39.97528 -38.55565 -37.73661 -35.95932 -34.93941 -32.92759 -32.15858 -31.76446 -30.84164 -28.81598 -26.92363 -26.46591 -26.03249 -25.09241 -22.86656 -22.00653 -20.87229 -20.20237 -19.22435 -17.67176 -17.33059 -16.93957 -16.51197 -16.03573 -15.88586 -15.54599 -15.41637 -15.19287 -14.66791 -14.10554 -14.01128 -13.88615 -13.66343 -13.45041 -13.22697 -12.94251 -12.74812 -12.65269 -12.43845 -12.28273 -12.12135 -11.91125 -11.83357 -11.69264 -11.60352 -11.17738 -11.12435 -11.01663 -10.65682 -10.52236 -10.38988 -10.28141 -10.16898 -9.97780 -9.40645 -8.88238 -8.42231 -8.08480 -7.60323 -6.66128 -4.29110 1.56745 1.69408 2.80067 2.88750 2.93179 3.12022 3.15578 3.52041 3.70526 3.84698 3.94273 4.24659 4.71908 4.81402 4.95716 5.11824 5.13833 5.27460 5.33158 5.39243 5.40661 5.41460 5.45511 5.54340 5.56972 5.64677 5.72327 5.75148 5.79639 5.82523 5.87503 5.94847 6.02537 6.03063 6.12089 6.25446 6.42748 6.56141 6.77285 6.79904 6.85088 6.96684 7.04082 7.55204 7.84131 8.04159 8.33876 8.73117 9.08078 9.39762 10.43695 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.004464 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.250868 B = 6271.430670 C = 7730.103176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.489 6.489 5 C 0.108 3.892 6 N -0.448 5.448 7 C -0.351 4.351 8 H 0.108 0.892 9 C 0.071 3.929 10 N -0.845 5.845 11 Si 0.855 3.145 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.254 1.254 15 C 0.508 3.492 16 O -0.574 6.574 17 C -0.077 4.077 18 H 0.119 0.881 19 C 0.074 3.926 20 O -0.306 6.306 21 C 0.117 3.883 22 C -0.143 4.143 23 C -0.059 4.059 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.107 4.107 27 C -0.054 4.054 28 C -0.140 4.140 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.278 0.722 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 2.943 10.405 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.170 5.170 7 C -0.478 4.478 8 H 0.125 0.875 9 C -0.138 4.138 10 N -0.479 5.479 11 Si 0.681 3.319 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.178 1.178 15 C 0.297 3.703 16 O -0.456 6.456 17 C -0.098 4.098 18 H 0.137 0.863 19 C -0.001 4.001 20 O -0.220 6.220 21 C 0.071 3.929 22 C -0.162 4.162 23 C -0.059 4.059 24 C -0.168 4.168 25 C -0.124 4.124 26 C -0.163 4.163 27 C -0.072 4.072 28 C -0.141 4.141 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.799 2.874 10.728 11.251 hybrid contribution 0.065 -0.894 -0.668 1.118 sum -1.733 1.979 10.059 10.398 Atomic orbital electron populations 1.23139 0.77485 1.02871 1.02256 1.86519 1.22715 1.34479 1.84906 1.24708 0.92797 0.81229 0.72278 1.90609 1.66584 1.36243 1.43939 1.21352 0.86940 0.88321 1.05141 1.43318 1.58734 1.08485 1.06434 1.19061 1.41547 0.99714 0.87476 0.87476 1.25322 0.96042 0.97797 0.94621 1.69776 1.38971 1.40890 0.98265 0.87249 0.81783 0.82744 0.80120 1.19497 1.20443 1.17774 1.19926 0.78743 0.88383 0.83208 1.90589 1.54875 1.68238 1.31879 1.21219 0.98549 0.94936 0.95126 0.86275 1.23703 0.91032 1.03714 0.81690 1.86795 1.36160 1.80705 1.18291 1.19503 0.87351 0.93738 0.92268 1.19922 0.98829 1.04412 0.93007 1.19294 0.91798 0.98781 0.96045 1.20813 1.02639 1.00500 0.92862 1.19479 0.94555 1.03490 0.94855 1.20723 0.94952 1.01145 0.99487 1.20118 0.97324 0.96499 0.93247 1.20396 0.93760 1.02925 0.97007 0.88693 0.92359 0.92149 0.87525 0.86916 0.91139 0.89683 0.86594 0.85894 0.91247 0.91125 0.91712 0.91668 0.91876 0.91493 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.87 10.56 -39.24 -0.41 -7.28 16 3 C 0.45 9.86 8.02 36.01 0.29 10.15 16 4 O -0.49 -11.91 16.18 -18.75 -0.30 -12.21 16 5 C 0.11 2.38 4.85 -5.19 -0.03 2.35 16 6 N -0.45 -10.60 1.63 -116.10 -0.19 -10.79 16 7 C -0.35 -8.66 8.88 -14.94 -0.13 -8.80 16 8 H 0.11 2.77 6.79 -52.48 -0.36 2.41 16 9 C 0.07 1.76 5.29 -17.47 -0.09 1.67 16 10 N -0.85 -22.01 13.96 55.50 0.77 -21.24 16 11 Si 0.86 18.57 25.18 -169.99 -4.28 14.29 16 12 H -0.27 -5.59 6.63 56.52 0.37 -5.21 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.25 -5.53 7.11 56.52 0.40 -5.13 16 15 C 0.51 11.91 6.81 -10.99 -0.07 11.83 16 16 O -0.57 -14.65 15.78 5.54 0.09 -14.57 16 17 C -0.08 -1.57 2.66 -91.56 -0.24 -1.81 16 18 H 0.12 2.35 6.88 -51.93 -0.36 1.99 16 19 C 0.07 1.35 7.33 38.06 0.28 1.63 16 20 O -0.31 -5.92 11.10 -20.15 -0.22 -6.15 16 21 C 0.12 2.20 7.04 -38.95 -0.27 1.92 16 22 C -0.14 -2.28 9.70 -39.31 -0.38 -2.66 16 23 C -0.06 -0.84 5.87 -104.72 -0.61 -1.46 16 24 C -0.11 -1.13 9.60 36.01 0.35 -0.79 16 25 C -0.12 -1.85 5.89 -104.56 -0.62 -2.46 16 26 C -0.11 -1.21 9.61 36.01 0.35 -0.86 16 27 C -0.05 -0.94 9.70 -39.72 -0.39 -1.33 16 28 C -0.14 -2.70 4.99 -104.10 -0.52 -3.22 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.11 2.31 3.46 -51.93 -0.18 2.13 16 33 H 0.11 2.34 7.36 -51.93 -0.38 1.96 16 34 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.12 2.19 7.89 -51.93 -0.41 1.78 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.63 5.93 -51.93 -0.31 0.33 16 40 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.07 0.64 5.94 -51.93 -0.31 0.34 16 44 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -31.43 365.72 -5.76 -37.19 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.68 Total: 7.49 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.03 Total: 7.76 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.58 Total: -32.03 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.85 Total: -40.21 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.28 Total: 14.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.43 -5.76 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185969804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.399 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds