Wall clock time and date at job start Tue Mar 31 2020 17:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00335 * 2 1 4 4 O 1.20823 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00252 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47317 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99415 * 269.99623 * 6 5 3 8 8 H 1.08003 * 119.99264 * 141.14486 * 7 6 5 9 9 C 1.38946 * 120.00599 * 321.13963 * 7 6 5 10 10 N 1.31409 * 120.00294 * 157.18356 * 9 7 6 11 11 Si 1.86799 * 119.99868 * 337.18317 * 9 7 6 12 12 H 1.48497 * 109.47301 * 94.46545 * 11 9 7 13 13 H 1.48494 * 109.47259 * 214.46877 * 11 9 7 14 14 H 1.48508 * 109.47139 * 334.46803 * 11 9 7 15 15 C 1.34771 * 120.00287 * 89.99662 * 6 5 3 16 16 O 1.21298 * 119.99548 * 4.56217 * 15 6 5 17 17 C 1.50696 * 120.00203 * 184.56382 * 15 6 5 18 18 H 1.08999 * 110.83412 * 40.82910 * 17 15 6 19 19 C 1.54707 * 110.94128 * 277.11529 * 17 15 6 20 20 O 1.43771 * 102.78947 * 267.11822 * 19 17 15 21 21 C 1.36129 * 109.26072 * 332.33177 * 20 19 17 22 22 C 1.39284 * 129.88964 * 198.46133 * 21 20 19 23 23 C 1.37926 * 120.24567 * 180.60559 * 22 21 20 24 24 C 1.50702 * 119.82281 * 180.02562 * 23 22 21 25 25 C 1.38280 * 120.35003 * 0.32258 * 23 22 21 26 26 C 1.50709 * 120.11478 * 179.56955 * 25 23 22 27 27 C 1.38353 * 119.76905 * 359.35088 * 25 23 22 28 28 C 1.37745 * 119.97392 * 0.46606 * 27 25 23 29 29 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46878 * 299.99789 * 1 2 3 31 31 H 1.08997 * 109.47002 * 59.99748 * 1 2 3 32 32 H 1.08998 * 109.47280 * 59.99479 * 5 3 2 33 33 H 1.09006 * 109.47058 * 299.99866 * 5 3 2 34 34 H 0.96994 * 120.00028 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.74825 * 148.79295 * 19 17 15 36 36 H 1.08998 * 110.74667 * 25.44302 * 19 17 15 37 37 H 1.08004 * 119.87524 * 0.58150 * 22 21 20 38 38 H 1.08996 * 109.47114 * 90.00231 * 24 23 22 39 39 H 1.09005 * 109.46927 * 209.99724 * 24 23 22 40 40 H 1.08995 * 109.47415 * 330.00177 * 24 23 22 41 41 H 1.08995 * 109.46992 * 90.00484 * 26 25 23 42 42 H 1.09006 * 109.46461 * 210.00238 * 26 25 23 43 43 H 1.08991 * 109.47024 * 330.00023 * 26 25 23 44 44 H 1.07997 * 120.01402 * 180.18597 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1757 3.3376 -1.1869 8 1 3.8684 4.3679 -1.2895 9 6 4.7677 2.6792 -2.2577 10 7 4.5634 3.1037 -3.4844 11 14 5.8541 1.1903 -1.9535 12 1 5.0447 -0.0479 -2.0832 13 1 6.9548 1.1688 -2.9500 14 1 6.4265 1.2664 -0.5853 15 6 4.1734 3.3251 1.1676 16 8 4.0827 2.7219 2.2161 17 6 4.5001 4.7962 1.1705 18 1 3.9045 5.3271 0.4278 19 6 6.0116 5.0274 0.9349 20 8 6.5358 5.0923 2.2721 21 6 5.5642 5.5399 3.1141 22 6 5.6706 6.0844 4.3916 23 6 4.5384 6.4657 5.0809 24 6 4.6646 7.0543 6.4624 25 6 3.2877 6.3050 4.5134 26 6 2.0534 6.7145 5.2751 27 6 3.1736 5.7713 3.2420 28 6 4.3033 5.3933 2.5505 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.9558 0.7808 -0.8908 33 1 3.9565 0.7805 0.8892 34 1 4.9763 2.6439 -4.2319 35 1 6.1811 5.9662 0.4077 36 1 6.4494 4.1920 0.3887 37 1 6.6433 6.2081 4.8444 38 1 4.7640 8.1372 6.3882 39 1 3.7757 6.8101 7.0440 40 1 5.5454 6.6415 6.9542 41 1 1.8186 7.7556 5.0537 42 1 1.2167 6.0821 4.9780 43 1 2.2323 6.6018 6.3443 44 1 2.1990 5.6468 2.7938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185969804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:28 Heat of formation + Delta-G solvation = -125.952390 kcal Electronic energy + Delta-G solvation = -29618.190805 eV Core-core repulsion = 25501.294093 eV Total energy + Delta-G solvation = -4116.896712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52460 -41.63104 -40.21565 -39.04344 -37.63673 -36.80324 -34.29333 -34.08549 -32.93007 -32.17539 -30.37739 -28.13502 -27.76339 -27.20999 -26.96968 -24.37251 -23.27065 -22.46097 -21.52986 -21.03243 -19.36336 -19.04330 -18.62440 -17.89389 -17.55391 -17.35899 -17.19840 -17.07890 -16.80835 -15.93366 -15.67054 -15.55363 -15.10000 -14.98700 -14.82644 -14.67453 -14.57414 -14.35950 -14.09970 -13.66663 -13.53686 -13.48686 -13.17022 -13.04025 -13.00409 -12.91747 -12.83277 -12.63826 -12.39937 -12.13659 -11.97615 -11.86869 -11.83987 -11.77168 -11.58772 -11.20518 -10.68514 -10.00059 -9.68564 -8.91265 -8.58606 -6.25475 0.28840 0.40642 1.06510 1.14593 1.25633 1.37346 1.43313 1.82408 2.11327 2.30336 2.34196 2.72760 2.87774 3.39107 3.61644 3.78367 3.86540 3.88141 3.96200 4.00517 4.13165 4.14393 4.25823 4.26972 4.31791 4.37278 4.45370 4.60119 4.60796 4.61691 4.75280 4.79170 4.83036 4.97181 5.05674 5.14700 5.18118 5.24041 5.26488 5.36944 5.47223 5.66578 5.77196 5.94857 6.06803 6.23254 6.65597 6.81734 7.17540 7.52381 8.54611 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.004464 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.250868 B = 6271.430670 C = 7730.103176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.522 6.522 5 C 0.099 3.901 6 N -0.454 5.454 7 C -0.351 4.351 8 H 0.084 0.916 9 C 0.040 3.960 10 N -0.882 5.882 11 Si 0.903 3.097 12 H -0.249 1.249 13 H -0.271 1.271 14 H -0.257 1.257 15 C 0.502 3.498 16 O -0.600 6.600 17 C -0.078 4.078 18 H 0.112 0.888 19 C 0.079 3.921 20 O -0.318 6.318 21 C 0.089 3.911 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.105 4.105 27 C -0.076 4.076 28 C -0.167 4.167 29 H 0.142 0.858 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.284 0.716 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 2.703 12.546 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.410 6.410 5 C -0.026 4.026 6 N -0.175 5.175 7 C -0.478 4.478 8 H 0.102 0.898 9 C -0.167 4.167 10 N -0.517 5.517 11 Si 0.727 3.273 12 H -0.175 1.175 13 H -0.197 1.197 14 H -0.181 1.181 15 C 0.293 3.707 16 O -0.484 6.484 17 C -0.100 4.100 18 H 0.130 0.870 19 C 0.004 3.996 20 O -0.233 6.233 21 C 0.044 3.956 22 C -0.164 4.164 23 C -0.054 4.054 24 C -0.166 4.166 25 C -0.122 4.122 26 C -0.161 4.161 27 C -0.094 4.094 28 C -0.169 4.169 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.163 0.837 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.854 2.610 12.862 13.254 hybrid contribution -0.057 -0.807 -1.255 1.493 sum -1.912 1.803 11.607 11.901 Atomic orbital electron populations 1.23571 0.74747 1.05950 1.02235 1.86486 1.25258 1.32301 1.84064 1.24574 0.92786 0.81695 0.71588 1.90594 1.67241 1.37500 1.45677 1.21465 0.87639 0.87616 1.05894 1.43375 1.58904 1.09108 1.06125 1.18873 1.41806 0.99138 0.87953 0.89838 1.25806 0.96537 1.00258 0.94073 1.69832 1.40081 1.42656 0.99088 0.86470 0.80474 0.80553 0.79831 1.17486 1.19701 1.18084 1.20481 0.77919 0.89605 0.82711 1.90542 1.56125 1.69149 1.32577 1.21189 0.99711 0.92843 0.96210 0.87001 1.23696 0.89563 1.04512 0.81872 1.86739 1.36584 1.81379 1.18549 1.19840 0.86844 0.95465 0.93427 1.20360 1.00659 1.03456 0.91917 1.19842 0.90774 0.97151 0.97674 1.20926 1.04103 1.01470 0.90053 1.19949 0.96605 1.01807 0.93835 1.20816 0.92967 1.02058 1.00296 1.20326 0.96614 0.97735 0.94712 1.20467 0.94923 1.04652 0.96825 0.84035 0.92283 0.92384 0.86956 0.85807 0.90580 0.87198 0.87644 0.83701 0.89198 0.89452 0.90474 0.89775 0.92207 0.89088 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -13.17 10.56 -51.37 -0.54 -13.71 16 3 C 0.45 19.93 8.02 71.24 0.57 20.50 16 4 O -0.52 -26.05 16.18 21.97 0.36 -25.69 16 5 C 0.10 4.38 4.85 85.63 0.42 4.79 16 6 N -0.45 -22.09 1.63 -639.60 -1.04 -23.14 16 7 C -0.35 -17.93 8.88 84.04 0.75 -17.18 16 8 H 0.08 4.58 6.79 -2.91 -0.02 4.56 16 9 C 0.04 1.99 5.29 84.93 0.45 2.44 16 10 N -0.88 -46.68 13.96 21.66 0.30 -46.38 16 11 Si 0.90 37.99 25.18 68.60 1.73 39.72 16 12 H -0.25 -9.70 6.63 99.48 0.66 -9.04 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 15 C 0.50 24.46 6.81 87.66 0.60 25.05 16 16 O -0.60 -31.58 15.78 -3.08 -0.05 -31.63 16 17 C -0.08 -3.35 2.66 -11.40 -0.03 -3.38 16 18 H 0.11 4.77 6.88 -2.39 -0.02 4.76 16 19 C 0.08 3.00 7.33 72.56 0.53 3.53 16 20 O -0.32 -12.59 11.10 -95.02 -1.05 -13.65 16 21 C 0.09 3.39 7.04 22.68 0.16 3.55 16 22 C -0.15 -4.45 9.70 22.45 0.22 -4.23 16 23 C -0.05 -1.42 5.87 -19.93 -0.12 -1.54 16 24 C -0.11 -1.76 9.60 71.24 0.68 -1.08 16 25 C -0.12 -3.47 5.89 -19.82 -0.12 -3.58 16 26 C -0.11 -2.10 9.61 71.24 0.68 -1.41 16 27 C -0.08 -2.71 9.70 22.18 0.22 -2.50 16 28 C -0.17 -6.71 4.99 -19.52 -0.10 -6.80 16 29 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.11 4.80 3.46 -2.39 -0.01 4.79 16 33 H 0.12 5.16 7.36 -2.38 -0.02 5.15 16 34 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.11 4.17 7.89 -2.39 -0.02 4.15 16 37 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.15 5.93 -2.38 -0.01 1.13 16 40 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.24 8.09 -2.38 -0.02 1.22 16 43 H 0.09 1.38 5.94 -2.39 -0.01 1.37 16 44 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -70.09 365.72 6.79 -63.29 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.99 Total: 31.08 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.11 Total: 20.11 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -0.74 Total: -69.52 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -1.29 Total: -84.68 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.73 Total: 39.72 kcal Total: -70.09 6.79 -63.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185969804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.658 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds