Wall clock time and date at job start Tue Mar 31 2020 18:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00138 * 2 1 4 4 O 1.20824 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99858 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.70129 * 353.28442 * 5 3 2 7 7 C 1.53622 * 109.66208 * 113.88063 * 5 3 2 8 8 C 1.53046 * 109.24236 * 174.54958 * 7 5 3 9 9 C 1.53043 * 109.53413 * 298.50693 * 8 7 5 10 10 C 1.53196 * 109.30922 * 61.36571 * 9 8 7 11 11 N 1.46923 * 108.77542 * 305.35990 * 10 9 8 12 12 S 1.65600 * 120.63088 * 233.58486 * 11 10 9 13 13 O 1.42097 * 104.27864 * 337.25252 * 12 11 10 14 14 O 1.42098 * 104.27755 * 209.39159 * 12 11 10 15 15 C 1.81408 * 104.44812 * 93.31878 * 12 11 10 16 16 C 1.52995 * 109.47069 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47065 * 60.00300 * 16 15 12 18 18 C 1.52998 * 109.47525 * 300.00174 * 16 15 12 19 19 C 1.50699 * 109.46867 * 179.97438 * 16 15 12 20 20 H 1.07998 * 120.00525 * 359.73347 * 19 16 15 21 21 C 1.37876 * 119.99731 * 179.97438 * 19 16 15 22 22 N 1.31513 * 120.00170 * 359.72966 * 21 19 16 23 23 Si 1.86808 * 119.99883 * 179.72853 * 21 19 16 24 24 H 1.48495 * 109.47053 * 60.00054 * 23 21 19 25 25 H 1.48506 * 109.46799 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46843 * 300.00034 * 23 21 19 27 27 H 1.08998 * 109.46972 * 300.00079 * 1 2 3 28 28 H 1.08996 * 109.47345 * 59.99687 * 1 2 3 29 29 H 1.08996 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.63985 * 54.55810 * 7 5 3 31 31 H 1.09008 * 109.45933 * 294.43125 * 7 5 3 32 32 H 1.08998 * 109.46018 * 178.49380 * 8 7 5 33 33 H 1.08994 * 109.45802 * 58.52466 * 8 7 5 34 34 H 1.08995 * 109.50098 * 301.41297 * 9 8 7 35 35 H 1.08993 * 109.52201 * 181.33087 * 9 8 7 36 36 H 1.09005 * 109.58073 * 185.57468 * 10 9 8 37 37 H 1.08998 * 109.70184 * 65.22669 * 10 9 8 38 38 H 1.08996 * 109.46573 * 60.00203 * 15 12 11 39 39 H 1.08998 * 109.47255 * 300.00217 * 15 12 11 40 40 H 1.09002 * 109.47412 * 179.97438 * 17 16 15 41 41 H 1.09005 * 109.47270 * 299.99856 * 17 16 15 42 42 H 1.09005 * 109.47399 * 59.99669 * 17 16 15 43 43 H 1.08998 * 109.46931 * 300.00084 * 18 16 15 44 44 H 1.09005 * 109.46861 * 60.00113 * 18 16 15 45 45 H 1.09002 * 109.47381 * 180.02562 * 18 16 15 46 46 H 0.97002 * 119.99613 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9867 0.2762 0.1190 7 6 4.0514 1.8869 -1.3235 8 6 5.5673 2.0883 -1.2602 9 6 5.9077 3.0592 -0.1272 10 6 5.4428 2.4649 1.2060 11 7 4.0150 2.1336 1.1039 12 16 2.9331 2.7115 2.2164 13 8 3.7257 2.9968 3.3607 14 8 1.9132 1.7230 2.2596 15 6 2.3026 4.2450 1.4805 16 6 1.2808 4.8814 2.4248 17 6 1.9508 5.1962 3.7638 18 6 0.1209 3.9097 2.6510 19 6 0.7576 6.1556 1.8137 20 1 1.1209 6.4815 0.8503 21 6 -0.1814 6.9081 2.4869 22 7 -0.6243 6.5111 3.6598 23 14 -0.8245 8.4916 1.7328 24 1 -1.4713 8.1925 0.4300 25 1 -1.8172 9.1086 2.6489 26 1 0.3044 9.4328 1.5204 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.5631 2.8482 -1.4831 31 1 3.8078 1.2141 -2.1458 32 1 5.9190 2.4977 -2.2072 33 1 6.0534 1.1303 -1.0759 34 1 5.4019 4.0094 -0.2981 35 1 6.9852 3.2208 -0.0975 36 1 5.5928 3.1934 2.0029 37 1 6.0128 1.5619 1.4245 38 1 1.8249 4.0206 0.5268 39 1 3.1290 4.9371 1.3190 40 1 1.2230 5.6500 4.4365 41 1 2.3297 4.2747 4.2061 42 1 2.7773 5.8885 3.6028 43 1 -0.3564 3.6855 1.6971 44 1 0.4997 2.9883 3.0932 45 1 -0.6073 4.3633 3.3234 46 1 -1.2847 7.0407 4.1335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:03 Heat of formation + Delta-G solvation = -147.102968 kcal Electronic energy + Delta-G solvation = -30261.659326 eV Core-core repulsion = 26279.289408 eV Total energy + Delta-G solvation = -3982.369919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64826 -38.32878 -36.82578 -36.21450 -35.86162 -35.30703 -32.59795 -31.69961 -31.55191 -27.74730 -26.53861 -25.61170 -25.15756 -24.98838 -23.93957 -21.24425 -20.64110 -19.25425 -18.58090 -17.83866 -17.31538 -16.52396 -16.00275 -15.83029 -15.56268 -15.25295 -14.76550 -14.55475 -14.51723 -14.27797 -13.78544 -13.66029 -13.15604 -13.03954 -12.66944 -12.58661 -12.37956 -12.10854 -11.96101 -11.87229 -11.54253 -11.44596 -11.24285 -11.11863 -11.01696 -10.99034 -10.87038 -10.65974 -10.61242 -10.46301 -10.31968 -10.25622 -10.05049 -9.96469 -9.51867 -9.44693 -8.97978 -8.55656 -8.32120 -5.95399 -4.06231 0.85556 2.20513 2.66864 3.16449 3.31413 3.36092 3.38405 4.33345 4.42094 4.47383 4.51106 4.69778 4.76910 4.88463 4.94452 5.05987 5.12059 5.29463 5.33626 5.44550 5.48172 5.49133 5.57221 5.68888 5.80793 5.83918 5.86384 5.87759 5.96607 6.08776 6.15004 6.45144 6.52400 6.70595 6.86590 6.93961 7.02993 7.14734 7.43192 7.62333 7.75596 7.90361 8.08345 8.19167 8.43050 8.91631 9.57872 11.05932 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.005094 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.995253 B = 5495.196476 C = 5989.359105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.348 6.348 3 C 0.465 3.535 4 O -0.492 6.492 5 C 0.168 3.832 6 H 0.104 0.896 7 C -0.127 4.127 8 C -0.112 4.112 9 C -0.141 4.141 10 C 0.122 3.878 11 N -1.001 6.001 12 S 2.586 3.414 13 O -0.965 6.965 14 O -0.960 6.960 15 C -0.571 4.571 16 C 0.086 3.914 17 C -0.164 4.164 18 C -0.155 4.155 19 C -0.495 4.495 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.024 0.976 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.022 0.978 45 H 0.090 0.910 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -11.962 -10.224 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.263 6.263 3 C 0.307 3.693 4 O -0.380 6.380 5 C 0.060 3.940 6 H 0.122 0.878 7 C -0.166 4.166 8 C -0.150 4.150 9 C -0.180 4.180 10 C -0.002 4.002 11 N -0.838 5.838 12 S 2.687 3.313 13 O -0.955 6.955 14 O -0.950 6.950 15 C -0.706 4.706 16 C 0.083 3.917 17 C -0.222 4.222 18 C -0.213 4.213 19 C -0.535 4.535 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.524 5.524 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.109 0.891 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.255 -12.107 -9.222 18.352 hybrid contribution -0.564 1.354 -0.879 1.710 sum 9.691 -10.753 -10.101 17.652 Atomic orbital electron populations 1.23278 0.75655 1.03135 1.03371 1.86334 1.23972 1.32361 1.83626 1.23161 0.91141 0.82627 0.72395 1.90708 1.66875 1.35382 1.44992 1.20404 0.87539 0.96744 0.89279 0.87831 1.22013 0.97444 1.02636 0.94467 1.21440 0.94475 1.00018 0.99030 1.21995 1.01602 0.99623 0.94756 1.21449 0.79375 1.01065 0.98336 1.58094 1.19584 1.63630 1.42515 1.06000 0.73102 0.78193 0.73955 1.93516 1.68991 1.86465 1.46531 1.93469 1.57828 1.58260 1.85484 1.30676 1.10396 1.15637 1.13896 1.17877 0.89218 0.94747 0.89849 1.22296 1.00484 0.99383 1.00005 1.22179 1.01417 0.96019 1.01665 1.20903 1.22985 1.05257 1.04325 0.92448 1.24931 0.96183 0.97766 0.94916 1.69803 1.30657 1.38480 1.13490 0.86621 0.78653 0.83439 0.79035 1.20313 1.21229 1.20327 0.90523 0.92128 0.88610 0.89788 0.90157 0.91015 0.91422 0.90838 0.90378 0.88382 0.91020 0.83594 0.87378 0.88738 0.95714 0.94625 0.94130 0.95923 0.89145 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.35 -5.25 10.56 -42.22 -0.45 -5.70 16 3 C 0.46 7.53 4.19 36.01 0.15 7.68 16 4 O -0.49 -9.32 11.43 -26.53 -0.30 -9.62 16 5 C 0.17 2.19 3.34 -68.53 -0.23 1.96 16 6 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.13 -1.26 5.37 -26.38 -0.14 -1.41 16 8 C -0.11 -0.89 5.88 -26.68 -0.16 -1.04 16 9 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 10 C 0.12 1.44 6.33 -3.71 -0.02 1.41 16 11 N -1.00 -14.99 3.21 -107.46 -0.35 -15.33 16 12 S 2.59 52.20 3.77 -107.50 -0.41 51.79 16 13 O -0.96 -21.29 14.23 -57.54 -0.82 -22.10 16 14 O -0.96 -21.09 11.63 -68.18 -0.79 -21.89 16 15 C -0.57 -12.35 4.66 37.15 0.17 -12.18 16 16 C 0.09 2.20 0.52 -155.67 -0.08 2.12 16 17 C -0.16 -4.24 7.77 37.16 0.29 -3.95 16 18 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 19 C -0.50 -13.63 8.01 -34.44 -0.28 -13.90 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.89 -24.98 9.35 55.43 0.52 -24.46 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.15 3.14 5.43 -51.93 -0.28 2.86 16 39 H 0.11 2.13 8.14 -51.92 -0.42 1.70 16 40 H 0.09 2.61 6.08 -51.93 -0.32 2.29 16 41 H 0.02 0.61 5.47 -51.93 -0.28 0.33 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.56 5.46 -51.93 -0.28 0.28 16 45 H 0.09 2.52 6.06 -51.93 -0.31 2.21 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -33.62 356.16 -8.74 -42.36 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.30 Total: 4.59 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 0.81 Total: -21.29 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.17 Total: -39.80 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -2.36 Total: -59.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.41 Total: 51.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.62 -8.74 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.746 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds