Wall clock time and date at job start Tue Mar 31 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 C 1.53001 * 109.47001 * 239.99563 * 2 1 3 5 5 O 1.45197 * 109.46619 * 119.99582 * 2 1 3 6 6 C 1.34237 * 117.00134 * 60.00196 * 5 2 1 7 7 O 1.20819 * 119.99848 * 359.97438 * 6 5 2 8 8 C 1.50701 * 120.00006 * 179.97438 * 6 5 2 9 9 C 1.52993 * 109.47067 * 180.02562 * 8 6 5 10 10 N 1.46498 * 109.47472 * 180.02562 * 9 8 6 11 11 S 1.65601 * 120.00315 * 165.27589 * 10 9 8 12 12 O 1.42102 * 104.27710 * 180.79984 * 11 10 9 13 13 O 1.42101 * 104.27317 * 308.65327 * 11 10 9 14 14 C 1.81389 * 104.44936 * 64.72563 * 11 10 9 15 15 C 1.53007 * 109.47309 * 173.81201 * 14 11 10 16 16 C 1.50700 * 115.54854 * 65.19124 * 15 14 11 17 17 H 1.07999 * 120.00034 * 264.78379 * 16 15 14 18 18 C 1.37876 * 119.99863 * 84.78912 * 16 15 14 19 19 N 1.31516 * 120.00071 * 352.22587 * 18 16 15 20 20 Si 1.86803 * 119.99795 * 172.22501 * 18 16 15 21 21 H 1.48495 * 109.47397 * 60.00211 * 20 18 16 22 22 H 1.48501 * 109.46768 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47267 * 299.99664 * 20 18 16 24 24 C 1.53002 * 117.49610 * 279.52810 * 15 14 11 25 25 C 1.52995 * 117.49864 * 210.86683 * 15 14 11 26 26 H 1.08988 * 109.47282 * 300.00512 * 1 2 3 27 27 H 1.09001 * 109.46862 * 60.00737 * 1 2 3 28 28 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46767 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46707 * 299.99358 * 3 2 1 31 31 H 1.08996 * 109.46925 * 59.99430 * 3 2 1 32 32 H 1.08995 * 109.47288 * 300.00067 * 4 2 1 33 33 H 1.08995 * 109.47289 * 60.00440 * 4 2 1 34 34 H 1.09000 * 109.46781 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.46683 * 60.00116 * 8 6 5 36 36 H 1.08999 * 109.47123 * 300.00530 * 8 6 5 37 37 H 1.08997 * 109.47469 * 60.00041 * 9 8 6 38 38 H 1.08999 * 109.47488 * 300.00191 * 9 8 6 39 39 H 0.97001 * 119.99696 * 345.00454 * 10 9 8 40 40 H 1.09006 * 109.47337 * 293.80721 * 14 11 10 41 41 H 1.09002 * 109.47632 * 53.81361 * 14 11 10 42 42 H 0.97003 * 120.00122 * 185.02862 * 19 18 16 43 43 H 1.08996 * 117.49740 * 359.97438 * 24 15 14 44 44 H 1.09000 * 117.49983 * 145.01990 * 24 15 14 45 45 H 1.09000 * 117.49768 * 214.97541 * 25 15 14 46 46 H 1.09001 * 117.49907 * 359.97251 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6532 -1.9684 1.3380 7 8 0.9559 -2.5025 0.5084 8 6 2.1181 -2.7436 2.5438 9 6 1.5714 -4.1709 2.4743 10 7 2.0228 -4.9244 3.6467 11 16 1.3035 -6.3654 4.0322 12 8 1.9737 -6.7870 5.2122 13 8 -0.0866 -6.0707 4.0448 14 6 1.7097 -7.4597 2.6439 15 6 1.2274 -8.8782 2.9544 16 6 -0.2658 -9.0463 3.0697 17 1 -0.7404 -9.0067 4.0390 18 6 -1.0259 -9.2508 1.9377 19 7 -0.4748 -9.1474 0.7480 20 14 -2.8384 -9.6748 2.0938 21 1 -3.5435 -8.5792 2.8062 22 1 -3.4255 -9.8441 0.7404 23 1 -2.9870 -10.9389 2.8589 24 6 2.1075 -9.7409 3.8610 25 6 2.0257 -10.0413 2.3622 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.7545 -2.2586 3.4498 36 1 3.2076 -2.7725 2.5594 37 1 1.9353 -4.6556 1.5684 38 1 0.4819 -4.1424 2.4585 39 1 2.7456 -4.5812 4.1950 40 1 1.2180 -7.0985 1.7405 41 1 2.7890 -7.4682 2.4915 42 1 -1.0237 -9.2190 -0.0486 43 1 3.0303 -9.2982 4.2358 44 1 1.6066 -10.4305 4.5405 45 1 1.4710 -10.9283 2.0564 46 1 2.8942 -9.7960 1.7510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451246925.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:31 Heat of formation + Delta-G solvation = -145.149114 kcal Electronic energy + Delta-G solvation = -27492.629760 eV Core-core repulsion = 23510.344567 eV Total energy + Delta-G solvation = -3982.285193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03142 -37.52177 -36.73914 -36.26777 -35.53265 -35.03390 -34.31022 -32.01617 -30.46098 -28.14955 -27.69780 -27.64699 -25.43017 -24.51220 -21.70829 -21.20064 -19.96476 -19.60567 -18.71895 -17.42740 -17.01753 -16.63964 -16.44572 -16.36574 -15.64040 -15.19182 -14.85335 -14.68119 -14.34812 -14.19118 -14.12191 -13.87582 -13.65503 -13.10318 -12.78063 -12.52778 -12.31716 -12.19991 -12.17378 -11.98447 -11.90651 -11.79253 -11.55823 -11.45996 -11.29960 -11.25681 -11.12940 -11.00534 -10.87974 -10.62316 -10.57832 -10.44599 -10.13524 -10.10569 -9.71916 -9.26014 -8.94425 -8.53632 -8.07800 -6.11053 -4.21915 1.05181 2.07091 2.42391 3.35166 3.37320 3.43834 3.47032 4.37570 4.40164 4.44689 4.46732 4.49794 4.61821 4.68015 4.84859 5.05143 5.16844 5.18495 5.20465 5.22956 5.25856 5.40539 5.44469 5.50152 5.57334 5.57671 5.70604 5.73940 5.81081 5.98632 6.00657 6.04653 6.10281 6.27840 6.34455 6.38685 6.62956 6.73325 6.99962 7.18942 7.27983 7.40584 7.66095 7.83134 8.22539 8.83229 9.49373 10.96523 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.003131 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.110928 B = 8940.097180 C = 9880.631541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.116 3.884 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.353 6.353 6 C 0.466 3.534 7 O -0.494 6.494 8 C -0.122 4.122 9 C 0.127 3.873 10 N -1.135 6.135 11 S 2.608 3.392 12 O -0.973 6.973 13 O -0.948 6.948 14 C -0.554 4.554 15 C 0.044 3.956 16 C -0.518 4.518 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.409 0.591 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.264 0.736 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 18.764 -2.310 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.080 3.920 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.271 6.271 6 C 0.308 3.692 7 O -0.381 6.381 8 C -0.161 4.161 9 C 0.000 4.000 10 N -0.892 5.892 11 S 2.705 3.295 12 O -0.963 6.963 13 O -0.937 6.937 14 C -0.687 4.687 15 C 0.042 3.958 16 C -0.555 4.555 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.717 3.283 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.245 4.245 25 C -0.181 4.181 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.242 0.758 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.394 18.372 -2.123 19.918 hybrid contribution -0.284 -0.026 -0.702 0.758 sum 7.110 18.346 -2.825 19.877 Atomic orbital electron populations 1.22510 0.93878 1.05107 1.02728 1.22197 0.94541 0.92203 0.83054 1.21847 1.02149 0.92670 1.03038 1.22502 1.01627 1.03437 0.96579 1.86535 1.69940 1.25406 1.45211 1.23426 0.77654 0.80666 0.87453 1.90647 1.34608 1.69751 1.43045 1.21565 1.03931 0.94991 0.95579 1.20999 1.01227 0.89529 0.88242 1.56027 1.53072 1.40684 1.39368 1.05148 0.74318 0.73410 0.76616 1.93508 1.76184 1.81610 1.45036 1.93542 1.31166 1.82241 1.86799 1.29981 1.07516 1.12641 1.18578 1.18266 0.93146 0.84651 0.99771 1.20485 0.88866 1.52143 0.94051 0.91382 1.24947 0.98633 0.93569 0.95089 1.69962 1.35857 1.47631 0.97426 0.86655 0.84786 0.79480 0.77345 1.19434 1.21124 1.19927 1.23199 1.01392 1.05996 0.93960 1.22553 1.00781 1.01589 0.93133 0.91957 0.91051 0.89485 0.91511 0.90379 0.91489 0.89515 0.91050 0.92011 0.86878 0.87069 0.90674 0.89023 0.75838 0.84725 0.88206 0.92645 0.90680 0.89532 0.89594 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 8.37 37.16 0.31 -1.44 16 2 C 0.12 1.07 1.13 -90.62 -0.10 0.97 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 5 O -0.35 -3.72 9.89 -39.28 -0.39 -4.11 16 6 C 0.47 5.41 7.27 36.01 0.26 5.67 16 7 O -0.49 -7.06 11.48 -18.74 -0.22 -7.27 16 8 C -0.12 -1.17 5.95 -27.89 -0.17 -1.34 16 9 C 0.13 1.68 5.42 -4.05 -0.02 1.66 16 10 N -1.13 -15.89 5.89 -10.62 -0.06 -15.96 16 11 S 2.61 51.79 5.19 -107.50 -0.56 51.23 16 12 O -0.97 -20.87 18.08 -57.54 -1.04 -21.91 16 13 O -0.95 -22.55 17.18 -57.54 -0.99 -23.54 16 14 C -0.55 -11.56 5.92 37.16 0.22 -11.34 16 15 C 0.04 1.07 1.32 -155.66 -0.21 0.87 16 16 C -0.52 -14.27 8.18 -34.44 -0.28 -14.55 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C 0.08 2.28 5.38 -17.82 -0.10 2.19 16 19 N -0.87 -24.25 12.98 55.43 0.72 -23.53 16 20 Si 0.89 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 25 C -0.14 -3.23 9.49 -26.69 -0.25 -3.48 16 26 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.04 5.89 -51.93 -0.31 0.74 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 1.00 5.89 -51.93 -0.31 0.70 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.09 1.40 7.66 -51.93 -0.40 1.00 16 39 H 0.41 4.45 8.62 -34.47 -0.30 4.15 16 40 H 0.13 2.95 8.14 -51.92 -0.42 2.52 16 41 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 42 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 45 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -34.11 391.55 -9.23 -43.33 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.61 Total: 6.89 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 0.04 Total: -27.60 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.66 Total: -39.49 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -2.63 Total: -56.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.56 Total: 51.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.11 -9.23 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451246925.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.816 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds