Wall clock time and date at job start Tue Mar 31 2020 18:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00056 * 2 1 4 4 O 1.20823 * 119.99725 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99578 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.47014 * 183.90466 * 5 3 2 7 7 H 1.09008 * 109.99355 * 53.30539 * 6 5 3 8 8 C 1.54338 * 109.99025 * 292.27259 * 6 5 3 9 9 C 1.55157 * 103.01624 * 218.66256 * 8 6 5 10 10 C 1.54911 * 101.58485 * 35.30756 * 9 8 6 11 11 N 1.47023 * 109.88500 * 174.40100 * 6 5 3 12 12 S 1.65596 * 125.64840 * 298.39490 * 11 6 5 13 13 O 1.42102 * 104.27481 * 147.21230 * 12 11 6 14 14 O 1.42105 * 104.27707 * 19.36042 * 12 11 6 15 15 C 1.81395 * 104.44919 * 263.28532 * 12 11 6 16 16 C 1.53006 * 109.46971 * 180.02562 * 15 12 11 17 17 C 1.53001 * 109.47188 * 300.00245 * 16 15 12 18 18 C 1.53001 * 109.47133 * 59.99832 * 16 15 12 19 19 C 1.50696 * 109.47151 * 180.02562 * 16 15 12 20 20 H 1.08003 * 120.00224 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00016 * 180.02562 * 19 16 15 22 22 N 1.31515 * 120.00239 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00157 * 179.97438 * 21 19 16 24 24 H 1.48507 * 109.46943 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47175 * 119.99452 * 23 21 19 26 26 H 1.48502 * 109.47192 * 240.00157 * 23 21 19 27 27 H 1.08998 * 109.47665 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47040 * 300.00226 * 1 2 3 29 29 H 1.09002 * 109.47202 * 59.99761 * 1 2 3 30 30 H 1.08997 * 109.47846 * 63.90591 * 5 3 2 31 31 H 1.09001 * 109.47352 * 303.89768 * 5 3 2 32 32 H 1.09000 * 110.84976 * 100.19826 * 8 6 5 33 33 H 1.08997 * 110.66473 * 337.04044 * 8 6 5 34 34 H 1.08997 * 111.00661 * 277.22999 * 9 8 6 35 35 H 1.09001 * 111.03577 * 153.39129 * 9 8 6 36 36 H 1.08999 * 110.36678 * 204.15121 * 10 9 8 37 37 H 1.08998 * 110.46453 * 81.86923 * 10 9 8 38 38 H 1.09000 * 109.47118 * 299.99774 * 15 12 11 39 39 H 1.08997 * 109.47371 * 60.00491 * 15 12 11 40 40 H 1.09000 * 109.47139 * 59.99713 * 17 16 15 41 41 H 1.09001 * 109.47142 * 180.02562 * 17 16 15 42 42 H 1.09007 * 109.46955 * 299.99506 * 17 16 15 43 43 H 1.09000 * 109.47231 * 60.00137 * 18 16 15 44 44 H 1.09005 * 109.47268 * 179.97438 * 18 16 15 45 45 H 1.09000 * 109.47210 * 300.00297 * 18 16 15 46 46 H 0.96996 * 120.00155 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0004 2.7386 0.0978 7 1 3.5225 3.2123 0.9554 8 6 3.6177 3.4904 -1.1946 9 6 4.8305 4.4305 -1.4243 10 6 6.0045 3.5509 -0.9263 11 7 5.4623 2.8187 0.2327 12 16 6.3529 2.1851 1.4767 13 8 7.5811 1.8061 0.8709 14 8 5.4954 1.2155 2.0632 15 6 6.6051 3.5798 2.6088 16 6 7.4261 3.1163 3.8140 17 6 6.6772 1.9978 4.5414 18 6 8.7830 2.5949 3.3366 19 6 7.6351 4.2748 4.7548 20 1 7.2240 5.2447 4.5169 21 6 8.3522 4.0967 5.9189 22 7 8.8532 2.9157 6.2085 23 14 8.6120 5.5328 7.0849 24 1 7.9530 6.7439 6.5331 25 1 8.0232 5.2082 8.4090 26 1 10.0667 5.7883 7.2391 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.9525 0.8426 -0.9237 31 1 3.9595 0.7212 0.8521 32 1 2.7041 4.0675 -1.0517 33 1 3.5065 2.7943 -2.0260 34 1 4.7408 5.3373 -0.8263 35 1 4.9441 4.6716 -2.4812 36 1 6.8439 4.1758 -0.6213 37 1 6.3148 2.8534 -1.7043 38 1 7.1391 4.3764 2.0907 39 1 5.6385 3.9515 2.9486 40 1 6.5256 1.1598 3.8611 41 1 7.2619 1.6680 5.4002 42 1 5.7105 2.3693 4.8816 43 1 9.3165 3.3917 2.8184 44 1 9.3680 2.2652 4.1952 45 1 8.6314 1.7569 2.6563 46 1 9.3580 2.7905 7.0273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451340468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:16 Heat of formation + Delta-G solvation = -156.227863 kcal Electronic energy + Delta-G solvation = -28661.018199 eV Core-core repulsion = 24678.252595 eV Total energy + Delta-G solvation = -3982.765604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67890 -38.69500 -36.68428 -36.50174 -36.29560 -35.37739 -31.99246 -31.67494 -30.94294 -28.27994 -26.68611 -26.20696 -25.74065 -25.24675 -22.33890 -21.57322 -20.70861 -19.48873 -18.43108 -17.77423 -17.37501 -16.96059 -16.54697 -16.00358 -15.78464 -15.32870 -14.97014 -14.81728 -14.24684 -13.93522 -13.70459 -13.46651 -13.22813 -13.03413 -12.99934 -12.59034 -12.53510 -12.44438 -12.10894 -12.01067 -11.59725 -11.52430 -11.26123 -11.14783 -11.09276 -10.95207 -10.94428 -10.86039 -10.84714 -10.70886 -10.52112 -10.35565 -10.27143 -10.12849 -9.67784 -9.61909 -8.99605 -8.64763 -8.42136 -6.05213 -4.17166 0.73361 2.12344 2.54645 3.09847 3.24118 3.32629 3.35387 4.23395 4.29630 4.36010 4.40745 4.64396 4.76676 4.82122 4.92056 4.99478 4.99837 5.16158 5.20300 5.28848 5.33603 5.46622 5.54269 5.63985 5.67015 5.73568 5.80661 5.85508 5.99213 6.06991 6.20796 6.28906 6.35891 6.46553 6.68254 6.76999 6.87611 7.01335 7.29145 7.47919 7.63912 7.66394 7.95965 8.07549 8.30985 8.81608 9.48452 10.96150 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.003550 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.140742 B = 7885.949030 C = 8363.476425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.509 6.509 5 C -0.153 4.153 6 C 0.168 3.832 7 H 0.085 0.915 8 C -0.120 4.120 9 C -0.133 4.133 10 C 0.120 3.880 11 N -1.017 6.017 12 S 2.603 3.397 13 O -0.957 6.957 14 O -0.959 6.959 15 C -0.579 4.579 16 C 0.081 3.919 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.059 0.941 21 C 0.064 3.936 22 N -0.883 5.883 23 Si 0.896 3.104 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 -1.405 -15.438 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.397 6.397 5 C -0.192 4.192 6 C 0.061 3.939 7 H 0.103 0.897 8 C -0.158 4.158 9 C -0.172 4.172 10 C -0.005 4.005 11 N -0.852 5.852 12 S 2.704 3.296 13 O -0.947 6.947 14 O -0.950 6.950 15 C -0.713 4.713 16 C 0.079 3.921 17 C -0.221 4.221 18 C -0.221 4.221 19 C -0.541 4.541 20 H 0.078 0.922 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.047 0.953 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.114 0.886 45 H 0.046 0.954 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.749 -2.161 -15.210 19.340 hybrid contribution -0.169 1.471 0.854 1.709 sum -11.918 -0.690 -14.356 18.671 Atomic orbital electron populations 1.23255 0.76487 1.03615 1.02504 1.86534 1.23325 1.33580 1.84103 1.23595 0.91841 0.81261 0.71785 1.90644 1.67303 1.36145 1.45627 1.22321 0.87983 1.00717 1.08191 1.20958 0.80045 0.92704 1.00184 0.89660 1.22700 0.98880 0.98403 0.95856 1.22832 0.94287 0.98316 1.01729 1.21966 0.96471 0.94140 0.87962 1.59052 1.15598 1.73318 1.37246 1.05491 0.73151 0.77316 0.73627 1.93549 1.44262 1.81551 1.75341 1.93463 1.66668 1.57480 1.77393 1.30547 1.10020 1.17096 1.13659 1.17955 0.90351 0.95504 0.88301 1.22273 0.99870 0.96824 1.03129 1.22279 0.99916 0.98521 1.01422 1.20979 1.34062 0.94920 1.04131 0.92239 1.24940 0.95271 0.95865 0.97676 1.69807 1.35649 1.21626 1.25076 0.86478 0.77915 0.82463 0.80785 1.19822 1.20921 1.20932 0.88197 0.91791 0.92009 0.87279 0.84077 0.89323 0.91069 0.90357 0.90057 0.90522 0.91271 0.86416 0.86314 0.95339 0.88629 0.94460 0.94474 0.88581 0.95417 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.25 10.57 -39.26 -0.41 -4.66 16 3 C 0.47 6.06 7.77 36.00 0.28 6.34 16 4 O -0.51 -7.15 14.51 -18.75 -0.27 -7.43 16 5 C -0.15 -1.95 5.29 -27.88 -0.15 -2.10 16 6 C 0.17 2.14 2.65 -66.94 -0.18 1.97 16 7 H 0.09 1.13 7.98 -51.92 -0.41 0.72 16 8 C -0.12 -1.20 5.44 -24.89 -0.14 -1.34 16 9 C -0.13 -1.19 7.09 -24.58 -0.17 -1.36 16 10 C 0.12 1.36 6.97 -2.53 -0.02 1.34 16 11 N -1.02 -14.27 3.32 -104.40 -0.35 -14.62 16 12 S 2.60 47.57 4.65 -107.50 -0.50 47.07 16 13 O -0.96 -19.70 15.32 -57.54 -0.88 -20.58 16 14 O -0.96 -18.97 12.60 -57.54 -0.72 -19.69 16 15 C -0.58 -11.30 5.12 37.16 0.19 -11.11 16 16 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 17 C -0.16 -3.98 7.77 37.16 0.29 -3.70 16 18 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 19 C -0.50 -13.15 8.01 -34.44 -0.28 -13.42 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 22 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.11 1.15 8.01 -51.93 -0.42 0.74 16 31 H 0.14 2.08 5.46 -51.93 -0.28 1.80 16 32 H 0.09 0.90 7.68 -51.93 -0.40 0.50 16 33 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 39 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 41 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 45 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 46 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -31.78 366.83 -8.40 -40.18 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.30 Total: 4.37 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 1.01 Total: -22.24 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.17 Total: -38.12 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -2.29 Total: -52.37 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 47.57 SS G_CDS: -0.50 Total: 47.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.78 -8.40 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451340468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.044 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds