Wall clock time and date at job start Tue Mar 31 2020 18:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47132 * 54.99651 * 3 2 1 5 5 C 1.53001 * 109.47417 * 175.00206 * 3 2 1 6 6 N 1.46505 * 109.46674 * 294.99589 * 3 2 1 7 7 C 1.46497 * 120.00543 * 299.99865 * 6 3 2 8 8 C 1.50697 * 109.46925 * 275.00408 * 7 6 3 9 9 O 1.20817 * 120.00192 * 359.97438 * 8 7 6 10 10 O 1.34231 * 119.99686 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00023 * 179.97438 * 10 8 7 12 12 S 1.65607 * 119.99520 * 119.99860 * 6 3 2 13 13 O 1.42098 * 104.27303 * 153.92552 * 12 6 3 14 14 O 1.42099 * 104.27920 * 26.07405 * 12 6 3 15 15 C 1.81397 * 104.44909 * 270.00065 * 12 6 3 16 16 C 1.53004 * 109.46702 * 186.92327 * 15 12 6 17 17 C 1.50700 * 115.55318 * 65.47300 * 16 15 12 18 18 H 1.08004 * 119.99513 * 264.71731 * 17 16 15 19 19 C 1.37874 * 120.00062 * 84.71280 * 17 16 15 20 20 N 1.31515 * 120.00423 * 352.84976 * 19 17 16 21 21 Si 1.86804 * 119.99727 * 172.85155 * 19 17 16 22 22 H 1.48499 * 109.47233 * 90.00008 * 21 19 17 23 23 H 1.48504 * 109.46929 * 210.00171 * 21 19 17 24 24 H 1.48504 * 109.47181 * 329.99874 * 21 19 17 25 25 C 1.52993 * 117.49890 * 279.79676 * 16 15 12 26 26 C 1.53007 * 117.49630 * 211.13936 * 16 15 12 27 27 H 1.09004 * 109.47195 * 60.00604 * 1 2 3 28 28 H 1.09002 * 109.46695 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47576 * 300.00342 * 1 2 3 30 30 H 1.09002 * 109.47451 * 239.99946 * 2 1 3 31 31 H 1.08996 * 109.47373 * 119.99664 * 2 1 3 32 32 H 1.09001 * 109.46945 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.46359 * 299.99734 * 5 3 2 34 34 H 1.08999 * 109.47423 * 59.99623 * 5 3 2 35 35 H 1.09007 * 109.46745 * 35.00036 * 7 6 3 36 36 H 1.08995 * 109.47268 * 155.00143 * 7 6 3 37 37 H 1.09000 * 109.46570 * 60.00062 * 11 10 8 38 38 H 1.08995 * 109.47108 * 179.97438 * 11 10 8 39 39 H 1.09006 * 109.47108 * 300.00544 * 11 10 8 40 40 H 1.08997 * 109.47202 * 306.91776 * 15 12 6 41 41 H 1.08997 * 109.47297 * 66.92206 * 15 12 6 42 42 H 0.97000 * 120.00187 * 185.02934 * 20 19 17 43 43 H 1.09007 * 117.49733 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49865 * 145.02211 * 25 16 15 45 45 H 1.08996 * 117.49921 * 214.98391 * 26 16 15 46 46 H 1.08997 * 117.49449 * 359.97346 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6525 2.0974 -1.2519 7 6 2.1139 1.5589 -2.5338 8 6 3.4852 2.1022 -2.8424 9 8 4.0218 2.8617 -2.0710 10 8 4.1106 1.7424 -3.9743 11 6 5.4289 2.3049 -4.2066 12 16 0.6926 3.4465 -1.2179 13 8 1.0186 4.1386 -2.4154 14 8 0.9464 4.0252 0.0548 15 6 -1.0003 2.7997 -1.2970 16 6 -1.9838 3.9622 -1.4464 17 6 -1.8821 4.7383 -2.7342 18 1 -1.2914 5.6416 -2.7750 19 6 -2.5430 4.2952 -3.8602 20 7 -3.1452 3.1260 -3.8519 21 14 -2.5829 5.3555 -5.3976 22 1 -1.4165 5.0270 -6.2560 23 1 -3.8382 5.0939 -6.1468 24 1 -2.5259 6.7885 -5.0123 25 6 -2.3582 4.7378 -0.1819 26 6 -3.3744 3.7946 -0.8306 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.9281 2.4721 0.1261 33 1 3.8531 0.9571 1.0571 34 1 3.9995 0.9054 -0.7161 35 1 2.1586 0.4713 -2.4760 36 1 1.4208 1.8527 -3.3220 37 1 6.0969 2.0114 -3.3969 38 1 5.8208 1.9333 -5.1533 39 1 5.3586 3.3921 -4.2436 40 1 -1.0944 2.1319 -2.1532 41 1 -1.2227 2.2509 -0.3819 42 1 -3.5473 2.7818 -4.6648 43 1 -1.9034 4.4201 0.7565 44 1 -2.5312 5.8093 -0.2815 45 1 -4.2155 4.2460 -1.3567 46 1 -3.5886 2.8561 -0.3194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451498310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:43 Heat of formation + Delta-G solvation = -129.931485 kcal Electronic energy + Delta-G solvation = -29517.537420 eV Core-core repulsion = 25535.912112 eV Total energy + Delta-G solvation = -3981.625307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39532 -37.86325 -36.79176 -36.43628 -36.00448 -35.09020 -32.66582 -32.04159 -30.08738 -28.65562 -28.07201 -26.51653 -25.44768 -23.60154 -21.55569 -21.25261 -20.44607 -19.53319 -18.45730 -17.64578 -17.43845 -16.76624 -16.37003 -16.10944 -15.52733 -15.05491 -14.83089 -14.49300 -14.33990 -13.88707 -13.73208 -13.49936 -13.46012 -13.13795 -12.99951 -12.51992 -12.16076 -12.09960 -11.98704 -11.88682 -11.64946 -11.38449 -11.30146 -11.28076 -11.06681 -10.97530 -10.94828 -10.86207 -10.69190 -10.62748 -10.52090 -10.47217 -10.25351 -10.10055 -9.73869 -9.01463 -8.95318 -8.57136 -8.10323 -6.13921 -4.22554 0.93786 2.37320 2.74887 3.25235 3.30468 3.35957 3.42164 4.37469 4.57979 4.61672 4.75412 4.92459 5.03157 5.04209 5.10103 5.12204 5.15667 5.17619 5.19577 5.33816 5.40819 5.50133 5.52972 5.62393 5.69759 5.72751 5.90045 5.91462 5.99495 6.00392 6.19964 6.28576 6.31786 6.34157 6.42669 6.54842 6.57986 6.67664 6.75724 6.96291 7.21074 7.36614 7.82383 7.91410 8.20168 8.83655 9.47341 10.93789 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.005600 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.979827 B = 4999.134895 C = 6271.492731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.134 4.134 3 C 0.141 3.859 4 H 0.104 0.896 5 C -0.152 4.152 6 N -0.985 5.985 7 C 0.135 3.865 8 C 0.444 3.556 9 O -0.490 6.490 10 O -0.363 6.363 11 C 0.037 3.963 12 S 2.598 3.402 13 O -0.937 6.937 14 O -0.969 6.969 15 C -0.554 4.554 16 C 0.042 3.958 17 C -0.506 4.506 18 H 0.070 0.930 19 C 0.080 3.920 20 N -0.878 5.878 21 Si 0.890 3.110 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.270 1.270 25 C -0.216 4.216 26 C -0.137 4.137 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.103 0.897 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.666 -9.969 3.771 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.173 4.173 3 C 0.035 3.965 4 H 0.122 0.878 5 C -0.211 4.211 6 N -0.819 5.819 7 C 0.006 3.994 8 C 0.284 3.716 9 O -0.376 6.376 10 O -0.279 6.279 11 C -0.057 4.057 12 S 2.697 3.303 13 O -0.927 6.927 14 O -0.959 6.959 15 C -0.687 4.687 16 C 0.040 3.960 17 C -0.543 4.543 18 H 0.088 0.912 19 C -0.124 4.124 20 N -0.514 5.514 21 Si 0.717 3.283 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.254 4.254 26 C -0.176 4.176 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.063 -8.939 3.950 14.762 hybrid contribution -0.255 -0.084 -0.959 0.996 sum 10.808 -9.023 2.991 14.393 Atomic orbital electron populations 1.22048 0.95371 1.02319 1.02880 1.21942 0.96669 0.96267 1.02459 1.21004 0.96179 0.93427 0.85856 0.87838 1.22164 0.94703 1.03504 1.00694 1.57963 1.64864 1.49584 1.09488 1.20580 0.90414 1.00816 0.87543 1.24507 0.88905 0.79409 0.78767 1.90646 1.66421 1.32637 1.47881 1.86495 1.32496 1.67297 1.41627 1.23209 0.80984 0.99592 1.01962 1.05640 0.76991 0.73370 0.74324 1.93556 1.82473 1.69116 1.47585 1.93489 1.84808 1.74341 1.43293 1.30165 1.19476 1.10222 1.08884 1.18330 0.93147 0.92165 0.92387 1.20535 1.31064 1.09999 0.92742 0.91170 1.24931 0.93818 0.95019 0.98648 1.69978 1.36062 1.17401 1.27910 0.86595 0.77459 0.81366 0.82830 1.20130 1.21156 1.19495 1.23266 1.07052 0.98334 0.96713 1.22534 0.94356 0.98280 1.02418 0.91442 0.92351 0.92457 0.91474 0.90891 0.90701 0.92393 0.93332 0.86349 0.85364 0.92220 0.88372 0.91826 0.84672 0.87880 0.92802 0.90655 0.89449 0.89497 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.03 37.16 0.34 -1.53 16 2 C -0.13 -1.37 5.35 -26.73 -0.14 -1.51 16 3 C 0.14 1.88 2.58 -67.93 -0.18 1.70 16 4 H 0.10 1.47 6.87 -51.93 -0.36 1.11 16 5 C -0.15 -1.95 7.76 37.16 0.29 -1.66 16 6 N -0.99 -15.56 1.74 -108.57 -0.19 -15.75 16 7 C 0.13 1.87 5.42 -5.20 -0.03 1.84 16 8 C 0.44 6.89 6.83 36.00 0.25 7.14 16 9 O -0.49 -8.83 13.18 -18.74 -0.25 -9.08 16 10 O -0.36 -4.94 10.57 -39.26 -0.41 -5.35 16 11 C 0.04 0.39 10.56 101.05 1.07 1.46 16 12 S 2.60 53.54 5.27 -107.50 -0.57 52.97 16 13 O -0.94 -22.70 15.98 -57.54 -0.92 -23.62 16 14 O -0.97 -21.65 16.57 -57.54 -0.95 -22.60 16 15 C -0.55 -11.23 4.55 37.16 0.17 -11.06 16 16 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 17 C -0.51 -13.63 7.66 -34.44 -0.26 -13.89 16 18 H 0.07 1.97 7.82 -52.48 -0.41 1.56 16 19 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 20 N -0.88 -23.39 12.97 55.43 0.72 -22.67 16 21 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.22 -4.70 9.96 -26.70 -0.27 -4.97 16 26 C -0.14 -3.04 9.48 -26.69 -0.25 -3.30 16 27 H 0.07 0.83 5.26 -51.93 -0.27 0.56 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 30 H 0.07 0.60 6.49 -51.93 -0.34 0.27 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.17 6.96 -51.93 -0.36 0.81 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.59 6.53 -51.93 -0.34 0.25 16 35 H 0.12 1.16 6.35 -51.92 -0.33 0.83 16 36 H 0.13 1.81 7.61 -51.93 -0.40 1.41 16 37 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 40 H 0.14 2.74 7.88 -51.93 -0.41 2.34 16 41 H 0.10 1.78 6.65 -51.93 -0.35 1.44 16 42 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -33.55 379.20 -8.54 -42.10 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.34 Total: 5.08 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 0.68 Total: -22.93 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.53 Total: -38.42 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -2.53 Total: -60.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.57 Total: 52.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.55 -8.54 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451498310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.835 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds