Wall clock time and date at job start Tue Mar 31 2020 17:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.64275 * 2 1 4 4 O 1.21207 * 120.00510 * 118.30596 * 3 2 1 5 5 O 1.34314 * 119.99849 * 298.31822 * 3 2 1 6 6 C 1.34919 * 117.00168 * 179.97438 * 5 3 2 7 7 H 1.08005 * 119.99493 * 359.97438 * 6 5 3 8 8 C 1.38747 * 120.00497 * 179.97438 * 6 5 3 9 9 N 1.31441 * 120.00246 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99696 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47229 * 90.00151 * 10 8 6 12 12 H 1.48500 * 109.47101 * 210.00297 * 10 8 6 13 13 H 1.48502 * 109.47269 * 330.00012 * 10 8 6 14 14 C 1.55159 * 110.72316 * 123.33634 * 2 1 3 15 15 C 1.54909 * 101.57990 * 82.85898 * 14 2 1 16 16 N 1.47743 * 104.83995 * 37.09908 * 15 14 2 17 17 C 1.34780 * 125.81887 * 155.82587 * 16 15 14 18 18 O 1.21517 * 119.99589 * 179.90744 * 17 16 15 19 19 O 1.34631 * 120.00247 * 359.90820 * 17 16 15 20 20 C 1.45204 * 117.00046 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.47166 * 179.97438 * 20 19 17 22 22 C 1.38227 * 119.99604 * 269.72432 * 21 20 19 23 23 C 1.38244 * 119.99880 * 179.74580 * 22 21 20 24 24 C 1.38238 * 119.99416 * 0.54906 * 23 22 21 25 25 C 1.38230 * 120.00096 * 359.70332 * 24 23 22 26 26 C 1.38231 * 120.00275 * 0.02562 * 25 24 23 27 27 C 1.47020 * 108.53125 * 335.74644 * 16 15 14 28 28 H 1.09003 * 109.46999 * 181.68974 * 1 2 3 29 29 H 1.08997 * 109.47276 * 301.68670 * 1 2 3 30 30 H 1.08996 * 109.47248 * 61.69161 * 1 2 3 31 31 H 0.97001 * 119.99698 * 179.97438 * 9 8 6 32 32 H 1.08994 * 111.00854 * 200.93945 * 14 2 1 33 33 H 1.09006 * 111.00035 * 324.78962 * 14 2 1 34 34 H 1.09003 * 110.36363 * 155.85234 * 15 14 2 35 35 H 1.08996 * 110.37070 * 278.06073 * 15 14 2 36 36 H 1.09002 * 109.46978 * 299.99710 * 20 19 17 37 37 H 1.09001 * 109.47066 * 59.99624 * 20 19 17 38 38 H 1.08005 * 120.00706 * 359.97438 * 22 21 20 39 39 H 1.07994 * 119.99995 * 180.27499 * 23 22 21 40 40 H 1.07996 * 119.99719 * 179.72659 * 24 23 22 41 41 H 1.08004 * 120.00019 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.00117 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.88367 * 241.68734 * 27 16 15 44 44 H 1.09000 * 109.88319 * 120.67352 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4103 0.0000 4 8 2.7407 1.8020 0.9241 5 8 1.7816 2.2332 -1.0240 6 6 2.2875 3.4824 -0.9617 7 1 2.8869 3.7806 -0.1141 8 6 2.0378 4.3840 -1.9863 9 7 2.5302 5.6012 -1.9252 10 14 1.0017 3.8681 -3.4525 11 1 -0.4271 4.1651 -3.1780 12 1 1.4406 4.6175 -4.6570 13 1 1.1681 2.4113 -3.6881 14 6 2.0790 -0.7975 1.2124 15 6 2.0126 -2.2520 0.6837 16 7 2.3744 -2.1521 -0.7453 17 6 2.8898 -3.1430 -1.4996 18 8 3.1479 -2.9439 -2.6703 19 8 3.1186 -4.3533 -0.9562 20 6 3.6755 -5.3726 -1.8276 21 6 3.8622 -6.6504 -1.0508 22 6 5.0554 -6.8936 -0.3968 23 6 5.2248 -8.0633 0.3202 24 6 4.2049 -8.9950 0.3736 25 6 3.0136 -8.7541 -0.2848 26 6 2.8422 -7.5819 -0.9971 27 6 2.0760 -0.7891 -1.2086 28 1 -0.3633 -1.0273 0.0303 29 1 -0.3634 0.5398 0.8744 30 1 -0.3633 0.4873 -0.9047 31 1 2.3559 6.2314 -2.6418 32 1 3.1061 -0.5098 1.4367 33 1 1.4396 -0.6698 2.0859 34 1 2.7293 -2.8808 1.2120 35 1 1.0044 -2.6508 0.7957 36 1 2.9953 -5.5495 -2.6608 37 1 4.6392 -5.0364 -2.2104 38 1 5.8542 -6.1680 -0.4428 39 1 6.1554 -8.2513 0.8349 40 1 4.3388 -9.9108 0.9300 41 1 2.2169 -9.4822 -0.2435 42 1 1.9115 -7.3939 -1.5119 43 1 1.3263 -0.8221 -1.9992 44 1 2.9853 -0.3163 -1.5798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496976461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:25 Heat of formation + Delta-G solvation = -124.625682 kcal Electronic energy + Delta-G solvation = -28063.469766 eV Core-core repulsion = 23946.630584 eV Total energy + Delta-G solvation = -4116.839182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79377 -39.89962 -39.34629 -38.02299 -36.28071 -35.33650 -33.12391 -32.37169 -32.20613 -31.30244 -29.66006 -27.40893 -26.35475 -25.69583 -23.85427 -22.98410 -22.01219 -21.71192 -20.63830 -19.13374 -18.14068 -17.86453 -17.43723 -16.97818 -16.69300 -16.38703 -15.75141 -15.54466 -15.16985 -15.02879 -14.49029 -14.26411 -13.91310 -13.84130 -13.74248 -13.44944 -13.09310 -12.97099 -12.87187 -12.54636 -12.45547 -12.35567 -12.14667 -11.93390 -11.48602 -11.47266 -11.40196 -11.26490 -10.92248 -10.79181 -10.72894 -10.58625 -10.49431 -10.35935 -9.72279 -9.31184 -9.28363 -9.19431 -8.78400 -8.70167 -6.39359 -4.15327 0.75376 1.01299 2.05316 2.78919 3.08643 3.23883 3.30814 3.35950 3.39530 3.82455 4.00774 4.23504 4.35521 4.42472 4.44658 4.60098 4.64576 4.73404 4.87838 4.99247 5.04648 5.08824 5.14538 5.15988 5.24344 5.25684 5.50172 5.55030 5.64115 5.69505 5.73200 5.79572 5.84007 6.00137 6.04693 6.08029 6.10719 6.16032 6.17469 6.23080 6.28439 6.47361 6.56987 7.38441 7.68881 8.01006 8.22292 8.56031 8.98489 9.63477 10.68814 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002360 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.833223 B =11862.435788 C =12256.576246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C 0.422 3.578 4 O -0.532 6.532 5 O -0.245 6.245 6 C -0.382 4.382 7 H 0.110 0.890 8 C 0.067 3.933 9 N -0.872 5.872 10 Si 0.901 3.099 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.257 1.257 14 C -0.110 4.110 15 C 0.105 3.895 16 N -0.600 5.600 17 C 0.665 3.335 18 O -0.569 6.569 19 O -0.362 6.362 20 C 0.128 3.872 21 C -0.097 4.097 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.093 4.093 27 C 0.140 3.860 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.280 0.720 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -28.286 3.856 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C 0.267 3.733 4 O -0.427 6.427 5 O -0.153 6.153 6 C -0.457 4.457 7 H 0.127 0.873 8 C -0.137 4.137 9 N -0.511 5.511 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.181 1.181 14 C -0.148 4.148 15 C -0.017 4.017 16 N -0.341 5.341 17 C 0.420 3.580 18 O -0.458 6.458 19 O -0.277 6.277 20 C 0.054 3.946 21 C -0.097 4.097 22 C -0.111 4.111 23 C -0.142 4.142 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.111 4.111 27 C 0.019 3.981 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.102 0.898 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.095 -28.031 3.530 28.274 hybrid contribution -0.327 0.042 -0.723 0.795 sum -1.423 -27.989 2.806 28.166 Atomic orbital electron populations 1.21822 0.91207 1.02401 1.03867 1.21306 0.97750 0.90498 0.96319 1.22282 0.81718 0.87085 0.82232 1.90605 1.38816 1.76597 1.36678 1.83513 1.65222 1.24204 1.42332 1.20646 1.32326 0.83244 1.09512 0.87267 1.24541 0.96869 0.94114 0.98142 1.69604 1.43204 1.04297 1.34001 0.86269 0.80214 0.79999 0.80872 1.19796 1.20703 1.18134 1.22801 1.03973 0.91608 0.96437 1.22488 1.01088 0.98069 0.80102 1.47131 1.64897 1.10305 1.11774 1.17428 0.77490 0.79991 0.83123 1.91026 1.57063 1.82436 1.15299 1.86290 1.77799 1.19856 1.43739 1.21703 0.99648 0.82647 0.90624 1.19548 0.94970 0.94678 1.00483 1.21150 0.97055 0.97260 0.95633 1.21185 0.99391 0.94176 0.99445 1.21253 0.93557 0.99257 0.98767 1.21169 0.97816 0.97383 0.97901 1.21123 0.98126 0.93674 0.98220 1.21961 1.01912 0.78414 0.95798 0.91609 0.91319 0.90830 0.90978 0.88843 0.88765 0.89826 0.90781 0.90167 0.90134 0.85625 0.85676 0.85863 0.85719 0.85700 0.89762 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.39 37.16 0.31 -1.52 16 2 C -0.06 -0.93 0.86 -153.83 -0.13 -1.06 16 3 C 0.42 9.55 6.41 36.01 0.23 9.78 16 4 O -0.53 -13.61 15.01 -19.05 -0.29 -13.89 16 5 O -0.24 -6.28 8.54 -20.71 -0.18 -6.45 16 6 C -0.38 -11.18 10.10 30.92 0.31 -10.87 16 7 H 0.11 3.53 7.09 -52.48 -0.37 3.16 16 8 C 0.07 1.92 5.49 -17.53 -0.10 1.82 16 9 N -0.87 -25.70 13.96 55.48 0.77 -24.92 16 10 Si 0.90 21.31 28.62 -169.99 -4.86 16.44 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 14 C -0.11 -1.48 5.64 -24.58 -0.14 -1.62 16 15 C 0.10 1.21 6.62 -2.35 -0.02 1.19 16 16 N -0.60 -8.79 3.34 -176.04 -0.59 -9.38 16 17 C 0.67 10.36 8.62 54.06 0.47 10.83 16 18 O -0.57 -10.55 16.46 -19.29 -0.32 -10.87 16 19 O -0.36 -4.72 9.75 -40.30 -0.39 -5.11 16 20 C 0.13 1.36 5.60 36.01 0.20 1.57 16 21 C -0.10 -0.89 5.52 -104.63 -0.58 -1.47 16 22 C -0.09 -0.78 9.70 -39.58 -0.38 -1.17 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 25 C -0.12 -0.87 10.05 -39.59 -0.40 -1.27 16 26 C -0.09 -0.76 9.70 -39.59 -0.38 -1.15 16 27 C 0.14 2.31 6.01 -3.06 -0.02 2.29 16 28 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.09 1.43 7.50 -51.93 -0.39 1.04 16 33 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 34 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.07 0.71 7.72 -51.93 -0.40 0.31 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 42 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.08 1.34 7.84 -51.93 -0.41 0.93 16 44 H 0.08 1.52 7.81 -51.93 -0.41 1.12 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -34.74 378.36 -7.70 -42.43 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.13 Total: 1.13 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.42 Total: 4.93 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.19 Total: -34.31 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.17 Total: -36.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.74 -7.70 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496976461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.193 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds