Wall clock time and date at job start Tue Mar 31 2020 17:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 110.64275 * 2 1 4 4 O 1.21207 * 120.00510 * 118.30596 * 3 2 1 5 5 O 1.34314 * 119.99849 * 298.31822 * 3 2 1 6 6 C 1.34919 * 117.00168 * 179.97438 * 5 3 2 7 7 H 1.08005 * 119.99493 * 359.97438 * 6 5 3 8 8 C 1.38747 * 120.00497 * 179.97438 * 6 5 3 9 9 N 1.31441 * 120.00246 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99696 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47229 * 90.00151 * 10 8 6 12 12 H 1.48500 * 109.47101 * 210.00297 * 10 8 6 13 13 H 1.48502 * 109.47269 * 330.00012 * 10 8 6 14 14 C 1.55159 * 110.72316 * 123.33634 * 2 1 3 15 15 C 1.54909 * 101.57990 * 82.85898 * 14 2 1 16 16 N 1.47743 * 104.83995 * 37.09908 * 15 14 2 17 17 C 1.34780 * 125.81887 * 155.82587 * 16 15 14 18 18 O 1.21517 * 119.99589 * 179.90744 * 17 16 15 19 19 O 1.34631 * 120.00247 * 359.90820 * 17 16 15 20 20 C 1.45204 * 117.00046 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.47166 * 179.97438 * 20 19 17 22 22 C 1.38227 * 119.99604 * 269.72432 * 21 20 19 23 23 C 1.38244 * 119.99880 * 179.74580 * 22 21 20 24 24 C 1.38238 * 119.99416 * 0.54906 * 23 22 21 25 25 C 1.38230 * 120.00096 * 359.70332 * 24 23 22 26 26 C 1.38231 * 120.00275 * 0.02562 * 25 24 23 27 27 C 1.47020 * 108.53125 * 335.74644 * 16 15 14 28 28 H 1.09003 * 109.46999 * 181.68974 * 1 2 3 29 29 H 1.08997 * 109.47276 * 301.68670 * 1 2 3 30 30 H 1.08996 * 109.47248 * 61.69161 * 1 2 3 31 31 H 0.97001 * 119.99698 * 179.97438 * 9 8 6 32 32 H 1.08994 * 111.00854 * 200.93945 * 14 2 1 33 33 H 1.09006 * 111.00035 * 324.78962 * 14 2 1 34 34 H 1.09003 * 110.36363 * 155.85234 * 15 14 2 35 35 H 1.08996 * 110.37070 * 278.06073 * 15 14 2 36 36 H 1.09002 * 109.46978 * 299.99710 * 20 19 17 37 37 H 1.09001 * 109.47066 * 59.99624 * 20 19 17 38 38 H 1.08005 * 120.00706 * 359.97438 * 22 21 20 39 39 H 1.07994 * 119.99995 * 180.27499 * 23 22 21 40 40 H 1.07996 * 119.99719 * 179.72659 * 24 23 22 41 41 H 1.08004 * 120.00019 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.00117 * 179.97438 * 26 25 24 43 43 H 1.09002 * 109.88367 * 241.68734 * 27 16 15 44 44 H 1.09000 * 109.88319 * 120.67352 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4103 0.0000 4 8 2.7407 1.8020 0.9241 5 8 1.7816 2.2332 -1.0240 6 6 2.2875 3.4824 -0.9617 7 1 2.8869 3.7806 -0.1141 8 6 2.0378 4.3840 -1.9863 9 7 2.5302 5.6012 -1.9252 10 14 1.0017 3.8681 -3.4525 11 1 -0.4271 4.1651 -3.1780 12 1 1.4406 4.6175 -4.6570 13 1 1.1681 2.4113 -3.6881 14 6 2.0790 -0.7975 1.2124 15 6 2.0126 -2.2520 0.6837 16 7 2.3744 -2.1521 -0.7453 17 6 2.8898 -3.1430 -1.4996 18 8 3.1479 -2.9439 -2.6703 19 8 3.1186 -4.3533 -0.9562 20 6 3.6755 -5.3726 -1.8276 21 6 3.8622 -6.6504 -1.0508 22 6 5.0554 -6.8936 -0.3968 23 6 5.2248 -8.0633 0.3202 24 6 4.2049 -8.9950 0.3736 25 6 3.0136 -8.7541 -0.2848 26 6 2.8422 -7.5819 -0.9971 27 6 2.0760 -0.7891 -1.2086 28 1 -0.3633 -1.0273 0.0303 29 1 -0.3634 0.5398 0.8744 30 1 -0.3633 0.4873 -0.9047 31 1 2.3559 6.2314 -2.6418 32 1 3.1061 -0.5098 1.4367 33 1 1.4396 -0.6698 2.0859 34 1 2.7293 -2.8808 1.2120 35 1 1.0044 -2.6508 0.7957 36 1 2.9953 -5.5495 -2.6608 37 1 4.6392 -5.0364 -2.2104 38 1 5.8542 -6.1680 -0.4428 39 1 6.1554 -8.2513 0.8349 40 1 4.3388 -9.9108 0.9300 41 1 2.2169 -9.4822 -0.2435 42 1 1.9115 -7.3939 -1.5119 43 1 1.3263 -0.8221 -1.9992 44 1 2.9853 -0.3163 -1.5798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496976461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:24 Heat of formation + Delta-G solvation = -145.399420 kcal Electronic energy + Delta-G solvation = -28064.370583 eV Core-core repulsion = 23946.630584 eV Total energy + Delta-G solvation = -4117.739999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06549 -41.33443 -40.17565 -39.37782 -37.53583 -37.22312 -34.59727 -34.22845 -33.00866 -31.84014 -30.80525 -28.41074 -27.88119 -27.16492 -25.12834 -23.54004 -23.52864 -22.36918 -21.74821 -20.70003 -20.19046 -19.22342 -18.34240 -18.26436 -17.92136 -17.52906 -17.02302 -16.86303 -16.29549 -16.16999 -15.94862 -15.56804 -15.25094 -14.93689 -14.59163 -14.40967 -14.33010 -14.24102 -14.07670 -13.80005 -13.78303 -13.40329 -13.29464 -13.18865 -13.02369 -12.69304 -12.42461 -12.31885 -12.16533 -12.09289 -12.08506 -11.93101 -11.81748 -11.77741 -11.71197 -11.07541 -10.84991 -9.96916 -9.86192 -9.85953 -8.56846 -6.43259 0.09240 0.46510 0.98044 1.26621 1.32819 1.48482 1.55282 1.58527 2.22342 2.29207 2.68253 2.88081 3.01063 3.20222 3.40393 3.69625 3.75775 3.79316 3.99762 4.08604 4.19438 4.22017 4.24824 4.25692 4.29064 4.49043 4.55036 4.59414 4.65118 4.69865 4.74253 4.86523 4.92418 4.99467 5.01952 5.07521 5.11834 5.12707 5.29097 5.46601 5.51259 5.57759 5.58643 5.86987 6.04280 6.22699 6.48686 6.79860 7.04364 7.54520 8.55877 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002360 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.833223 B =11862.435788 C =12256.576246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C 0.423 3.577 4 O -0.566 6.566 5 O -0.251 6.251 6 C -0.406 4.406 7 H 0.059 0.941 8 C 0.018 3.982 9 N -0.915 5.915 10 Si 0.976 3.024 11 H -0.253 1.253 12 H -0.268 1.268 13 H -0.251 1.251 14 C -0.106 4.106 15 C 0.112 3.888 16 N -0.600 5.600 17 C 0.665 3.335 18 O -0.606 6.606 19 O -0.355 6.355 20 C 0.126 3.874 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.103 4.103 27 C 0.144 3.856 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.289 0.711 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.093 0.907 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 -31.824 4.012 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.052 4.052 3 C 0.269 3.731 4 O -0.462 6.462 5 O -0.160 6.160 6 C -0.482 4.482 7 H 0.076 0.924 8 C -0.182 4.182 9 N -0.555 5.555 10 Si 0.795 3.205 11 H -0.178 1.178 12 H -0.193 1.193 13 H -0.175 1.175 14 C -0.144 4.144 15 C -0.009 4.009 16 N -0.340 5.340 17 C 0.420 3.580 18 O -0.498 6.498 19 O -0.269 6.269 20 C 0.052 3.948 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.128 4.128 25 C -0.146 4.146 26 C -0.121 4.121 27 C 0.022 3.978 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.111 0.889 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.290 -31.590 3.737 31.980 hybrid contribution 0.491 1.039 -0.612 1.302 sum -2.800 -30.551 3.125 30.838 Atomic orbital electron populations 1.21883 0.88089 1.05119 1.03836 1.21455 0.99945 0.85880 0.97905 1.23789 0.79846 0.88897 0.80529 1.90586 1.39976 1.77854 1.37749 1.83534 1.65694 1.23057 1.43675 1.20303 1.33482 0.85429 1.08971 0.92358 1.25528 0.97851 0.93734 1.01122 1.69700 1.44557 1.05624 1.35570 0.85177 0.78892 0.79873 0.76523 1.17750 1.19299 1.17506 1.22861 1.02913 0.92326 0.96323 1.22701 1.03597 0.96682 0.77936 1.47118 1.64598 1.09317 1.13010 1.17535 0.77030 0.80670 0.82717 1.90998 1.58527 1.83191 1.17044 1.86309 1.77554 1.19097 1.43933 1.21876 0.99321 0.82676 0.90911 1.19516 0.95954 0.94273 1.01618 1.21306 0.96995 0.98130 0.96135 1.21466 1.00468 0.93733 0.99118 1.21623 0.93095 0.99878 0.98237 1.21488 0.98639 0.97282 0.97166 1.21316 0.98207 0.93987 0.98552 1.21757 1.00604 0.79423 0.96030 0.87469 0.90727 0.91596 0.90086 0.91435 0.85953 0.88310 0.87115 0.89871 0.90649 0.85542 0.83859 0.83398 0.83473 0.84855 0.88867 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.39 71.98 0.60 -2.55 16 2 C -0.05 -1.57 0.86 -51.74 -0.04 -1.62 16 3 C 0.42 19.64 6.41 71.24 0.46 20.10 16 4 O -0.57 -30.30 15.01 20.78 0.31 -29.99 16 5 O -0.25 -13.23 8.54 14.85 0.13 -13.11 16 6 C -0.41 -24.97 10.10 67.94 0.69 -24.28 16 7 H 0.06 4.08 7.09 -2.91 -0.02 4.06 16 8 C 0.02 1.05 5.49 84.87 0.47 1.51 16 9 N -0.91 -55.62 13.96 21.62 0.30 -55.32 16 10 Si 0.98 43.94 28.62 68.60 1.96 45.90 16 11 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 14 C -0.11 -2.65 5.64 31.99 0.18 -2.47 16 15 C 0.11 2.19 6.62 86.79 0.57 2.77 16 16 N -0.60 -16.58 3.34 -941.28 -3.14 -19.73 16 17 C 0.67 20.12 8.62 129.79 1.12 21.24 16 18 O -0.61 -22.53 16.46 19.79 0.33 -22.20 16 19 O -0.36 -8.79 9.75 -55.40 -0.54 -9.33 16 20 C 0.13 2.62 5.60 71.24 0.40 3.02 16 21 C -0.11 -1.98 5.52 -19.87 -0.11 -2.09 16 22 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 23 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 24 C -0.11 -1.16 10.05 22.27 0.22 -0.94 16 25 C -0.13 -1.44 10.05 22.27 0.22 -1.22 16 26 C -0.10 -1.48 9.70 22.27 0.22 -1.27 16 27 C 0.14 4.64 6.01 86.73 0.52 5.16 16 28 H 0.11 1.72 7.45 -2.39 -0.02 1.70 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.29 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.07 2.05 7.50 -2.39 -0.02 2.03 16 33 H 0.12 2.38 8.04 -2.38 -0.02 2.36 16 34 H 0.10 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.11 1.49 7.72 -2.39 -0.02 1.47 16 36 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 37 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.09 2.84 7.84 -2.39 -0.02 2.82 16 44 H 0.05 1.82 7.81 -2.39 -0.02 1.81 16 Total: -1.00 -80.59 378.36 6.31 -74.28 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.01 Total: 14.98 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.96 Total: 14.52 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -2.84 Total: -75.04 kcal Atomic # 8 Polarization: -74.86 SS G_CDS: 0.22 Total: -74.63 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.96 Total: 45.90 kcal Total: -80.59 6.31 -74.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496976461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.121 kcal (2) G-P(sol) polarization free energy of solvation -80.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds