Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 C 1.50697 * 109.47456 * 239.99541 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00446 * 4 2 1 6 6 C 1.37879 * 119.99974 * 60.00167 * 4 2 1 7 7 N 1.31516 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46943 * 59.99816 * 8 6 4 10 10 H 1.48493 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47132 * 300.00383 * 8 6 4 12 12 C 1.53001 * 109.46772 * 119.99644 * 2 1 3 13 13 S 1.81401 * 109.46984 * 300.00139 * 12 2 1 14 14 O 1.42098 * 110.54571 * 68.37782 * 13 12 2 15 15 O 1.42095 * 110.54441 * 291.62053 * 13 12 2 16 16 N 1.65603 * 104.44806 * 179.97438 * 13 12 2 17 17 C 1.46935 * 120.62952 * 89.99951 * 16 13 12 18 18 C 1.53189 * 108.77418 * 126.41298 * 17 16 13 19 19 C 1.53046 * 109.31336 * 54.63373 * 18 17 16 20 20 C 1.53036 * 109.53927 * 298.63505 * 19 18 17 21 21 H 1.09002 * 109.49886 * 301.41083 * 20 19 18 22 22 C 1.52998 * 109.49372 * 181.34583 * 20 19 18 23 23 C 1.50699 * 109.47199 * 65.06759 * 22 20 19 24 24 O 1.20829 * 119.99827 * 359.97438 * 23 22 20 25 25 O 1.34235 * 120.00208 * 179.97438 * 23 22 20 26 26 C 1.46996 * 120.61836 * 270.01971 * 16 13 12 27 27 H 1.08994 * 109.47744 * 300.00438 * 1 2 3 28 28 H 1.08999 * 109.46573 * 60.00577 * 1 2 3 29 29 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46695 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46951 * 299.99192 * 3 2 1 32 32 H 1.09000 * 109.47266 * 59.99667 * 3 2 1 33 33 H 0.96998 * 119.99503 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47405 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.47155 * 60.00182 * 12 2 1 36 36 H 1.09001 * 109.58491 * 6.62855 * 17 16 13 37 37 H 1.08995 * 109.70157 * 246.27279 * 17 16 13 38 38 H 1.09001 * 109.50029 * 294.68601 * 18 17 16 39 39 H 1.09004 * 109.52513 * 174.60403 * 18 17 16 40 40 H 1.08997 * 109.45653 * 178.61032 * 19 18 17 41 41 H 1.09003 * 109.45320 * 58.65818 * 19 18 17 42 42 H 1.09007 * 109.46613 * 185.06494 * 22 20 19 43 43 H 1.08997 * 109.47781 * 305.06334 * 22 20 19 44 44 H 0.96693 * 117.00039 * 180.02562 * 25 23 22 45 45 H 1.09004 * 109.57815 * 113.80561 * 26 16 13 46 46 H 1.09007 * 109.62790 * 353.36421 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3228 -1.1197 -4.0078 9 1 1.8283 -2.5201 -4.0079 10 1 1.8282 -0.4195 -5.2203 11 1 3.8078 -1.1192 -4.0075 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1341 2.7303 14 8 0.0278 -0.0181 2.8543 15 8 2.0478 1.4101 2.8544 16 7 2.0527 -0.7406 3.9937 17 6 3.3645 -0.4064 4.5651 18 6 3.2087 -0.2116 6.0766 19 6 2.5576 -1.4568 6.6830 20 6 1.1670 -1.6546 6.0756 21 1 0.5572 -0.7717 6.2675 22 6 0.5037 -2.8803 6.7069 23 6 0.2639 -2.6229 8.1723 24 8 0.5905 -1.5675 8.6616 25 8 -0.3125 -3.5660 8.9340 26 6 1.2989 -1.8663 4.5642 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.7092 1.1612 -3.4845 34 1 3.1299 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2494 36 1 3.7356 0.5140 4.1144 37 1 4.0669 -1.2171 4.3717 38 1 2.5797 0.6578 6.2684 39 1 4.1893 -0.0577 6.5271 40 1 2.4681 -1.3308 7.7620 41 1 3.1747 -2.3296 6.4695 42 1 -0.4478 -3.0740 6.2116 43 1 1.1559 -3.7460 6.5921 44 1 -0.4460 -3.3549 9.8681 45 1 1.8311 -2.7977 4.3707 46 1 0.3075 -1.9091 4.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572226597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = -175.569343 kcal Electronic energy + Delta-G solvation = -28364.761137 eV Core-core repulsion = 24381.156823 eV Total energy + Delta-G solvation = -3983.604313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70496 -38.60720 -36.62836 -36.41441 -36.26897 -35.28784 -33.62785 -31.89688 -31.66660 -28.26825 -26.66411 -25.72316 -25.23828 -24.55025 -23.25912 -21.46397 -20.14668 -19.45311 -18.46886 -18.22853 -17.44437 -16.88653 -16.25844 -15.99717 -15.69088 -15.36276 -14.87593 -14.62113 -14.48997 -14.13091 -14.02015 -13.70844 -13.10361 -12.98143 -12.96096 -12.52864 -12.51030 -12.47628 -12.03136 -11.97076 -11.67417 -11.43096 -11.22004 -11.18248 -11.06502 -11.05792 -10.94508 -10.84712 -10.71703 -10.57941 -10.41065 -10.33001 -10.26697 -10.10248 -9.65870 -9.57369 -8.92517 -8.61578 -8.40756 -6.04082 -4.16337 0.81721 1.93101 2.72871 3.10498 3.26134 3.31842 3.33225 4.31219 4.33505 4.41645 4.50908 4.64931 4.74318 4.90704 4.99763 5.05831 5.16005 5.21022 5.28956 5.32542 5.40894 5.50426 5.64006 5.64828 5.72627 5.75789 5.86461 5.99745 6.04264 6.22951 6.25618 6.32395 6.37601 6.69713 6.69891 6.79118 6.90168 7.03794 7.30615 7.49634 7.60700 7.66879 7.97344 8.08841 8.32307 8.82002 9.49080 10.97174 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.002979 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.727553 B = 9397.669512 C = 9686.149165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.581 4.581 13 S 2.592 3.408 14 O -0.962 6.962 15 O -0.961 6.961 16 N -1.008 6.008 17 C 0.115 3.885 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.091 4.091 21 H 0.088 0.912 22 C -0.111 4.111 23 C 0.479 3.521 24 O -0.510 6.510 25 O -0.520 6.520 26 C 0.123 3.877 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.409 0.591 45 H 0.069 0.931 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -8.776 19.100 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.692 3.308 14 O -0.952 6.952 15 O -0.951 6.951 16 N -0.843 5.843 17 C -0.010 4.010 18 C -0.168 4.168 19 C -0.156 4.156 20 C -0.111 4.111 21 H 0.106 0.894 22 C -0.149 4.149 23 C 0.321 3.679 24 O -0.398 6.398 25 O -0.332 6.332 26 C -0.003 4.003 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.267 0.733 45 H 0.087 0.913 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.451 -7.667 18.785 20.341 hybrid contribution 0.642 -0.948 -0.470 1.238 sum 2.094 -8.615 18.314 20.348 Atomic orbital electron populations 1.22271 0.96919 1.00590 1.02327 1.17925 0.92816 0.92189 0.89080 1.22279 0.99704 0.97847 1.02331 1.20911 1.31808 1.12115 0.89433 0.92371 1.24941 0.94885 0.94978 0.98923 1.69793 1.36245 1.22534 1.23596 0.86594 0.79151 0.79706 0.82151 1.20264 1.21173 1.20282 1.30576 1.11241 1.12759 1.16912 1.05744 0.74651 0.75093 0.75361 1.93521 1.29478 1.86534 1.85710 1.93527 1.78108 1.37806 1.85671 1.57985 1.29184 1.47128 1.50023 1.21437 0.83740 1.01550 0.94262 1.21817 1.01200 0.98651 0.95085 1.21687 0.94707 0.98149 1.01101 1.21367 0.97701 0.97267 0.94795 0.89410 1.21422 1.04539 1.01336 0.87617 1.23553 0.73078 0.80985 0.90260 1.90719 1.47818 1.26425 1.74790 1.84549 1.74414 1.47258 1.27021 1.21387 0.97275 0.89022 0.92581 0.95364 0.88673 0.94496 0.94491 0.88651 0.95369 0.92671 0.86469 0.86469 0.88730 0.91634 0.91281 0.90907 0.90362 0.92085 0.86984 0.87256 0.73261 0.91272 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 2 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 3 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 C -0.58 -11.21 5.12 37.16 0.19 -11.02 16 13 S 2.59 47.82 4.49 -107.50 -0.48 47.34 16 14 O -0.96 -19.75 14.21 -57.54 -0.82 -20.57 16 15 O -0.96 -20.07 14.21 -57.54 -0.82 -20.89 16 16 N -1.01 -13.96 3.22 -113.46 -0.37 -14.33 16 17 C 0.12 1.38 6.43 -3.71 -0.02 1.36 16 18 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 19 C -0.12 -1.17 4.92 -26.69 -0.13 -1.30 16 20 C -0.09 -0.93 1.98 -90.51 -0.18 -1.11 16 21 H 0.09 1.10 7.96 -51.93 -0.41 0.68 16 22 C -0.11 -0.82 5.29 -27.88 -0.15 -0.97 16 23 C 0.48 4.22 8.04 36.01 0.29 4.51 16 24 O -0.51 -6.11 14.74 -18.75 -0.28 -6.39 16 25 O -0.52 -3.42 13.42 -39.27 -0.53 -3.94 16 26 C 0.12 1.38 5.72 -3.67 -0.02 1.36 16 27 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 28 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 32 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 35 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 36 H 0.09 1.22 6.86 -51.93 -0.36 0.86 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.83 5.94 -51.93 -0.31 0.52 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.41 1.10 9.10 45.56 0.41 1.52 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 1.14 6.86 -51.92 -0.36 0.78 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -33.83 362.71 -8.79 -42.61 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.41 Total: 4.87 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.15 Total: -37.88 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.44 Total: -51.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 47.82 SS G_CDS: -0.48 Total: 47.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.83 -8.79 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572226597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.956 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds