Wall clock time and date at job start Tue Mar 31 2020 18:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 C 1.50697 * 109.47456 * 239.99541 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00446 * 4 2 1 6 6 C 1.37879 * 119.99974 * 60.00167 * 4 2 1 7 7 N 1.31516 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46943 * 59.99816 * 8 6 4 10 10 H 1.48493 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47132 * 300.00383 * 8 6 4 12 12 C 1.53001 * 109.46772 * 119.99644 * 2 1 3 13 13 S 1.81401 * 109.46984 * 300.00139 * 12 2 1 14 14 O 1.42098 * 110.54571 * 68.37782 * 13 12 2 15 15 O 1.42095 * 110.54441 * 291.62053 * 13 12 2 16 16 N 1.65603 * 104.44806 * 179.97438 * 13 12 2 17 17 C 1.46935 * 120.62952 * 89.99951 * 16 13 12 18 18 C 1.53189 * 108.77418 * 126.41298 * 17 16 13 19 19 C 1.53046 * 109.31336 * 54.63373 * 18 17 16 20 20 C 1.53036 * 109.53927 * 298.63505 * 19 18 17 21 21 H 1.09002 * 109.49886 * 301.41083 * 20 19 18 22 22 C 1.52998 * 109.49372 * 181.34583 * 20 19 18 23 23 C 1.50699 * 109.47199 * 65.06759 * 22 20 19 24 24 O 1.20829 * 119.99827 * 359.97438 * 23 22 20 25 25 O 1.34235 * 120.00208 * 179.97438 * 23 22 20 26 26 C 1.46996 * 120.61836 * 270.01971 * 16 13 12 27 27 H 1.08994 * 109.47744 * 300.00438 * 1 2 3 28 28 H 1.08999 * 109.46573 * 60.00577 * 1 2 3 29 29 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46695 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46951 * 299.99192 * 3 2 1 32 32 H 1.09000 * 109.47266 * 59.99667 * 3 2 1 33 33 H 0.96998 * 119.99503 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47405 * 180.02562 * 12 2 1 35 35 H 1.09006 * 109.47155 * 60.00182 * 12 2 1 36 36 H 1.09001 * 109.58491 * 6.62855 * 17 16 13 37 37 H 1.08995 * 109.70157 * 246.27279 * 17 16 13 38 38 H 1.09001 * 109.50029 * 294.68601 * 18 17 16 39 39 H 1.09004 * 109.52513 * 174.60403 * 18 17 16 40 40 H 1.08997 * 109.45653 * 178.61032 * 19 18 17 41 41 H 1.09003 * 109.45320 * 58.65818 * 19 18 17 42 42 H 1.09007 * 109.46613 * 185.06494 * 22 20 19 43 43 H 1.08997 * 109.47781 * 305.06334 * 22 20 19 44 44 H 0.96693 * 117.00039 * 180.02562 * 25 23 22 45 45 H 1.09004 * 109.57815 * 113.80561 * 26 16 13 46 46 H 1.09007 * 109.62790 * 353.36421 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3228 -1.1197 -4.0078 9 1 1.8283 -2.5201 -4.0079 10 1 1.8282 -0.4195 -5.2203 11 1 3.8078 -1.1192 -4.0075 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1341 2.7303 14 8 0.0278 -0.0181 2.8543 15 8 2.0478 1.4101 2.8544 16 7 2.0527 -0.7406 3.9937 17 6 3.3645 -0.4064 4.5651 18 6 3.2087 -0.2116 6.0766 19 6 2.5576 -1.4568 6.6830 20 6 1.1670 -1.6546 6.0756 21 1 0.5572 -0.7717 6.2675 22 6 0.5037 -2.8803 6.7069 23 6 0.2639 -2.6229 8.1723 24 8 0.5905 -1.5675 8.6616 25 8 -0.3125 -3.5660 8.9340 26 6 1.2989 -1.8663 4.5642 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.7092 1.1612 -3.4845 34 1 3.1299 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2494 36 1 3.7356 0.5140 4.1144 37 1 4.0669 -1.2171 4.3717 38 1 2.5797 0.6578 6.2684 39 1 4.1893 -0.0577 6.5271 40 1 2.4681 -1.3308 7.7620 41 1 3.1747 -2.3296 6.4695 42 1 -0.4478 -3.0740 6.2116 43 1 1.1559 -3.7460 6.5921 44 1 -0.4460 -3.3549 9.8681 45 1 1.8311 -2.7977 4.3707 46 1 0.3075 -1.9091 4.1132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572226597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:26 Heat of formation + Delta-G solvation = -199.060889 kcal Electronic energy + Delta-G solvation = -28365.779806 eV Core-core repulsion = 24381.156823 eV Total energy + Delta-G solvation = -3984.622983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38008 -39.45262 -38.16751 -38.11047 -37.06182 -36.84899 -34.48183 -33.61916 -32.77858 -29.00926 -28.31156 -27.69256 -27.24182 -25.48782 -24.04327 -22.24792 -21.28254 -20.94498 -19.63185 -18.96704 -18.83388 -17.88320 -17.61209 -16.95519 -16.94271 -16.84431 -16.66885 -15.62126 -15.52743 -15.10395 -15.01608 -14.85131 -14.63129 -14.41521 -14.35778 -13.86120 -13.72328 -13.38520 -13.32210 -13.14702 -12.87776 -12.86396 -12.77650 -12.77055 -12.48137 -12.44076 -12.18065 -12.15184 -12.00796 -11.96887 -11.88695 -11.64338 -11.55877 -11.39533 -11.33733 -11.15268 -10.62715 -10.40453 -9.83695 -8.02070 -6.21160 -0.62427 1.29503 1.46522 1.46798 1.54165 1.80719 2.24381 2.45247 2.94299 3.19626 3.26064 3.56014 3.82500 3.88867 4.02414 4.12940 4.16990 4.22870 4.34326 4.45555 4.58615 4.60665 4.65030 4.68905 4.79881 4.86498 4.87116 4.88430 4.90964 4.99882 5.00973 5.09065 5.17699 5.28174 5.36056 5.39584 5.48841 5.50391 5.65062 5.72247 5.74461 5.97284 6.12064 6.34644 6.83849 7.07132 7.47333 8.97577 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.002979 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.727553 B = 9397.669512 C = 9686.149165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.272 1.272 12 C -0.583 4.583 13 S 2.606 3.394 14 O -0.989 6.989 15 O -0.992 6.992 16 N -1.001 6.001 17 C 0.108 3.892 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.090 4.090 21 H 0.053 0.947 22 C -0.108 4.108 23 C 0.482 3.518 24 O -0.550 6.550 25 O -0.515 6.515 26 C 0.114 3.886 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.425 0.575 45 H 0.110 0.890 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -11.792 20.030 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.197 1.197 12 C -0.715 4.715 13 S 2.705 3.295 14 O -0.979 6.979 15 O -0.982 6.982 16 N -0.840 5.840 17 C -0.016 4.016 18 C -0.168 4.168 19 C -0.152 4.152 20 C -0.111 4.111 21 H 0.072 0.928 22 C -0.146 4.146 23 C 0.326 3.674 24 O -0.441 6.441 25 O -0.329 6.329 26 C -0.011 4.011 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.144 0.856 43 H 0.160 0.840 44 H 0.286 0.714 45 H 0.128 0.872 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.761 -10.703 19.723 22.609 hybrid contribution 0.209 -0.021 -0.642 0.676 sum 2.970 -10.724 19.080 22.088 Atomic orbital electron populations 1.22196 0.97753 1.00547 1.01187 1.17915 0.92333 0.91996 0.91024 1.22215 0.99802 0.98611 1.01195 1.21287 1.31717 1.12366 0.90366 0.91692 1.25701 0.95170 0.95645 1.01752 1.69947 1.37216 1.23727 1.23897 0.85659 0.78735 0.78789 0.78722 1.19499 1.21466 1.19697 1.30491 1.12418 1.13393 1.15216 1.04976 0.73916 0.74775 0.75814 1.93478 1.31294 1.86896 1.86210 1.93480 1.78483 1.40042 1.86228 1.57624 1.30209 1.47621 1.48501 1.21704 0.83140 1.02306 0.94491 1.21840 1.01994 0.98328 0.94663 1.21666 0.94678 0.98531 1.00308 1.21287 0.97851 0.97420 0.94516 0.92831 1.21453 1.05747 1.00868 0.86522 1.23800 0.72219 0.80462 0.90887 1.90719 1.49696 1.28037 1.75647 1.84510 1.73633 1.46382 1.28337 1.21733 0.97260 0.89367 0.92742 0.95080 0.91208 0.93895 0.94130 0.91134 0.95124 0.92953 0.84652 0.84294 0.90224 0.88107 0.94047 0.88749 0.91288 0.89259 0.85574 0.83962 0.71357 0.87242 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 2 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -8.03 7.78 71.98 0.56 -7.47 16 4 C -0.52 -26.70 8.01 25.60 0.21 -26.50 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 6 C 0.02 0.88 5.15 84.65 0.44 1.31 16 7 N -0.91 -50.42 9.35 21.45 0.20 -50.22 16 8 Si 0.96 41.69 29.54 68.60 2.03 43.72 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 C -0.58 -21.54 5.12 71.98 0.37 -21.17 16 13 S 2.61 94.74 4.49 -56.49 -0.25 94.49 16 14 O -0.99 -40.66 14.21 -127.65 -1.81 -42.47 16 15 O -0.99 -41.89 14.21 -127.65 -1.81 -43.70 16 16 N -1.00 -25.88 3.22 -512.89 -1.65 -27.53 16 17 C 0.11 2.34 6.43 86.36 0.56 2.89 16 18 C -0.13 -2.59 6.08 30.67 0.19 -2.40 16 19 C -0.11 -1.96 4.92 30.62 0.15 -1.81 16 20 C -0.09 -1.68 1.98 -10.72 -0.02 -1.70 16 21 H 0.05 1.35 7.96 -2.39 -0.02 1.34 16 22 C -0.11 -1.28 5.29 29.85 0.16 -1.12 16 23 C 0.48 7.58 8.04 71.24 0.57 8.16 16 24 O -0.55 -12.88 14.74 21.95 0.32 -12.56 16 25 O -0.52 -5.51 13.42 -51.47 -0.69 -6.21 16 26 C 0.11 2.22 5.72 86.35 0.49 2.72 16 27 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 28 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 32 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 33 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 35 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.08 1.97 6.86 -2.39 -0.02 1.96 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.07 1.36 5.94 -2.39 -0.01 1.34 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.43 1.44 9.10 -74.06 -0.67 0.76 16 45 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.09 1.91 6.86 -2.38 -0.02 1.90 16 Total: -1.00 -74.79 362.71 0.84 -73.95 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.32 Total: 21.64 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 4.20 Total: -51.11 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.45 Total: -77.75 kcal Atomic # 8 Polarization: -100.94 SS G_CDS: -3.99 Total: -104.93 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 94.74 SS G_CDS: -0.25 Total: 94.49 kcal Total: -74.79 0.84 -73.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572226597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.114 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds