Wall clock time and date at job start Tue Mar 31 2020 18:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52994 * 109.47306 * 120.00137 * 2 1 3 5 5 S 1.81396 * 109.47128 * 174.99916 * 4 2 1 6 6 O 1.42095 * 108.58120 * 65.51313 * 5 4 2 7 7 O 1.42107 * 108.57927 * 294.48572 * 5 4 2 8 8 C 1.81395 * 101.92251 * 180.02562 * 5 4 2 9 9 C 1.53005 * 109.47606 * 180.02562 * 8 5 4 10 10 C 1.50697 * 109.47453 * 179.97438 * 9 8 5 11 11 O 1.21284 * 120.00071 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99926 * 179.97438 * 10 9 8 13 13 C 1.47016 * 125.65127 * 359.97029 * 12 10 9 14 14 C 1.54317 * 107.27544 * 178.98694 * 13 12 10 15 15 C 1.55161 * 102.94040 * 337.81168 * 14 13 12 16 16 O 1.42903 * 111.00309 * 277.38547 * 15 14 13 17 17 C 1.50696 * 111.00179 * 153.57607 * 15 14 13 18 18 H 1.08003 * 119.99607 * 243.51886 * 17 15 14 19 19 C 1.37879 * 120.00584 * 63.24935 * 17 15 14 20 20 N 1.31521 * 119.99465 * 354.29255 * 19 17 15 21 21 Si 1.86794 * 120.00270 * 174.29525 * 19 17 15 22 22 H 1.48502 * 109.46911 * 94.98366 * 21 19 17 23 23 H 1.48502 * 109.47227 * 214.97830 * 21 19 17 24 24 H 1.48496 * 109.47481 * 334.98199 * 21 19 17 25 25 C 1.47426 * 125.64631 * 180.02562 * 12 10 9 26 26 H 1.08997 * 109.46741 * 299.99715 * 1 2 3 27 27 H 1.09000 * 109.47302 * 59.99764 * 1 2 3 28 28 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46690 * 240.00280 * 2 1 3 30 30 H 1.09002 * 109.46556 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46991 * 299.99831 * 3 2 1 32 32 H 1.08997 * 109.47130 * 60.00524 * 3 2 1 33 33 H 1.08999 * 109.46771 * 54.99898 * 4 2 1 34 34 H 1.08995 * 109.47335 * 294.99753 * 4 2 1 35 35 H 1.08998 * 109.47674 * 59.99738 * 8 5 4 36 36 H 1.09004 * 109.47230 * 299.99888 * 8 5 4 37 37 H 1.08998 * 109.47023 * 59.99089 * 9 8 5 38 38 H 1.09004 * 109.46341 * 299.99546 * 9 8 5 39 39 H 1.09007 * 109.87765 * 59.56967 * 13 12 10 40 40 H 1.09001 * 110.01372 * 298.48159 * 13 12 10 41 41 H 1.09001 * 110.72598 * 219.44849 * 14 13 12 42 42 H 1.08996 * 110.71948 * 96.17114 * 14 13 12 43 43 H 0.96701 * 114.00052 * 295.42104 * 16 15 14 44 44 H 0.97000 * 119.99793 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.37052 * 85.24270 * 25 12 10 46 46 H 1.09004 * 110.36714 * 322.91737 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 3.8479 -0.8514 1.1764 6 8 4.3992 0.4564 1.2466 7 8 4.1977 -1.6943 0.0871 8 6 4.2235 -1.7214 2.7232 9 6 5.7354 -1.9252 2.8397 10 6 6.0475 -2.6474 4.1250 11 8 5.1491 -2.9672 4.8744 12 7 7.3249 -2.9379 4.4417 13 6 8.5050 -2.6108 3.6284 14 6 9.7452 -3.1119 4.3979 15 6 9.2384 -3.1872 5.8625 16 8 9.3001 -1.9060 6.4923 17 6 10.0140 -4.2111 6.6505 18 1 9.5112 -5.0797 7.0493 19 6 11.3666 -4.0419 6.8575 20 7 12.0018 -3.0486 6.2747 21 14 12.2969 -5.2234 7.9656 22 1 12.9164 -6.2917 7.1408 23 1 13.3576 -4.4849 8.6970 24 1 11.3564 -5.8329 8.9399 25 6 7.7700 -3.6375 5.6607 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -1.7198 1.2950 34 1 1.7518 -0.1584 2.1369 35 1 3.7247 -2.6905 2.7254 36 1 3.8709 -1.1295 3.5679 37 1 6.2339 -0.9559 2.8377 38 1 6.0883 -2.5171 1.9951 39 1 8.5687 -1.5321 3.4848 40 1 8.4418 -3.1102 2.6615 41 1 10.5668 -2.4011 4.3102 42 1 10.0469 -4.0974 4.0431 43 1 10.1976 -1.5609 6.5949 44 1 12.9535 -2.9298 6.4200 45 1 7.7205 -4.7170 5.5182 46 1 7.1609 -3.3383 6.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:12 Heat of formation + Delta-G solvation = -168.868266 kcal Electronic energy + Delta-G solvation = -27127.038826 eV Core-core repulsion = 23143.725093 eV Total energy + Delta-G solvation = -3983.313733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.62166 -37.41071 -37.24167 -36.84513 -36.11047 -34.37054 -33.19868 -32.26823 -29.89207 -28.54748 -28.31515 -27.57881 -25.91357 -24.23064 -22.20425 -20.88148 -19.80199 -19.11559 -18.85109 -17.62184 -17.19941 -16.72918 -16.50274 -15.90208 -15.71149 -15.12259 -15.09116 -14.98980 -14.42620 -14.23522 -14.11482 -13.67163 -13.37535 -13.06619 -12.94608 -12.73188 -12.56702 -12.44657 -12.26663 -12.18560 -12.09608 -11.90939 -11.79554 -11.54281 -11.44124 -11.39783 -11.31592 -11.28466 -11.08719 -10.92724 -10.65286 -10.52226 -10.45296 -10.08283 -9.56160 -9.38421 -8.76993 -8.26154 -8.08518 -6.32814 -4.40960 -0.29752 2.48916 2.92546 3.16634 3.19210 3.25367 3.30118 3.54888 3.74744 4.07838 4.23385 4.27017 4.31720 4.53158 4.61291 4.78958 4.85723 4.95374 5.05839 5.11614 5.24536 5.26818 5.37209 5.42252 5.50159 5.50598 5.60206 5.65043 5.69482 5.78631 5.81483 5.96157 5.98238 6.22814 6.37095 6.57807 6.84386 6.90626 7.25284 7.32447 7.68980 7.94755 8.03214 8.49172 8.61679 9.25831 9.31952 10.73903 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.038019 B = 0.002209 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.302268 B =12671.008592 C =12898.829350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.184 4.184 4 C -0.609 4.609 5 S 2.413 3.587 6 O -0.932 6.932 7 O -0.937 6.937 8 C -0.592 4.592 9 C -0.130 4.130 10 C 0.530 3.470 11 O -0.554 6.554 12 N -0.604 5.604 13 C 0.092 3.908 14 C -0.135 4.135 15 C 0.247 3.753 16 O -0.582 6.582 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.120 3.880 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.380 0.620 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 5.687 -12.484 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.241 4.241 4 C -0.738 4.738 5 S 2.597 3.403 6 O -0.929 6.929 7 O -0.934 6.934 8 C -0.721 4.721 9 C -0.170 4.170 10 C 0.317 3.683 11 O -0.434 6.434 12 N -0.336 5.336 13 C -0.031 4.031 14 C -0.173 4.173 15 C 0.206 3.794 16 O -0.391 6.391 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.002 4.002 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.230 0.770 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.358 5.841 -12.772 22.328 hybrid contribution 0.690 -0.889 1.199 1.645 sum -16.668 4.952 -11.573 20.887 Atomic orbital electron populations 1.21811 0.93491 1.02235 1.02395 1.20850 0.98029 0.96550 0.94864 1.22369 1.03727 0.94911 1.03070 1.30402 1.25487 1.10296 1.07594 1.08213 0.78379 0.76169 0.77541 1.93576 1.75958 1.36855 1.86510 1.93593 1.81563 1.68732 1.49562 1.30108 1.04446 1.15633 1.21954 1.21316 0.92841 1.03747 0.99135 1.19696 0.81662 0.79750 0.87172 1.90651 1.45131 1.55247 1.52366 1.48609 1.05162 1.56496 1.23360 1.22306 0.86755 0.99813 0.94245 1.23190 0.94662 1.01691 0.97796 1.19612 0.88449 0.82850 0.88461 1.86140 1.34073 1.36210 1.82642 1.21424 0.93475 1.07702 1.34913 0.91679 1.24998 0.97349 0.95676 0.95017 1.69764 1.10218 1.30951 1.42260 0.86405 0.79362 0.80558 0.80673 1.20559 1.20939 1.19637 1.22403 0.96586 0.95494 0.85686 0.92184 0.91950 0.92276 0.89620 0.89884 0.91525 0.91615 0.84786 0.84685 0.84327 0.84202 0.87355 0.87539 0.92073 0.92500 0.89279 0.91237 0.76998 0.92205 0.90879 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.08 -0.58 2.92 -90.62 -0.26 -0.85 16 3 C -0.18 -1.40 8.83 37.16 0.33 -1.07 16 4 C -0.61 -3.78 5.26 37.15 0.20 -3.59 16 5 S 2.41 22.57 4.51 -107.50 -0.49 22.08 16 6 O -0.93 -11.22 15.46 -57.83 -0.89 -12.12 16 7 O -0.94 -11.65 18.10 -57.83 -1.05 -12.70 16 8 C -0.59 -5.99 5.09 37.16 0.19 -5.80 16 9 C -0.13 -1.71 4.90 -27.88 -0.14 -1.84 16 10 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 11 O -0.55 -11.39 16.24 5.55 0.09 -11.30 16 12 N -0.60 -11.67 3.33 -170.53 -0.57 -12.24 16 13 C 0.09 1.61 6.49 -3.07 -0.02 1.59 16 14 C -0.13 -2.82 5.37 -24.90 -0.13 -2.96 16 15 C 0.25 5.81 0.88 -89.63 -0.08 5.74 16 16 O -0.58 -14.46 13.17 -35.23 -0.46 -14.93 16 17 C -0.54 -13.67 8.25 -34.44 -0.28 -13.96 16 18 H 0.06 1.66 7.79 -52.48 -0.41 1.25 16 19 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 20 N -0.89 -22.48 10.76 55.43 0.60 -21.88 16 21 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C 0.12 2.62 6.08 -2.53 -0.02 2.60 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.77 5.41 -51.93 -0.28 0.49 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.14 1.23 8.10 -51.92 -0.42 0.81 16 36 H 0.14 1.28 8.10 -51.92 -0.42 0.86 16 37 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.96 7.52 -51.93 -0.39 1.57 16 42 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 43 H 0.38 9.40 7.57 45.56 0.34 9.75 16 44 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 45 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 46 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -32.78 383.41 -9.11 -41.89 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.04 Total: 9.95 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.06 Total: -9.39 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.03 Total: -34.12 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.31 Total: -51.04 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 22.57 SS G_CDS: -0.49 Total: 22.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.78 -9.11 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.977 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds