Wall clock time and date at job start Tue Mar 31 2020 18:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47021 * 2 1 4 4 C 1.52994 * 109.47306 * 120.00137 * 2 1 3 5 5 S 1.81396 * 109.47128 * 174.99916 * 4 2 1 6 6 O 1.42095 * 108.58120 * 65.51313 * 5 4 2 7 7 O 1.42107 * 108.57927 * 294.48572 * 5 4 2 8 8 C 1.81395 * 101.92251 * 180.02562 * 5 4 2 9 9 C 1.53005 * 109.47606 * 180.02562 * 8 5 4 10 10 C 1.50697 * 109.47453 * 179.97438 * 9 8 5 11 11 O 1.21284 * 120.00071 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99926 * 179.97438 * 10 9 8 13 13 C 1.47016 * 125.65127 * 359.97029 * 12 10 9 14 14 C 1.54317 * 107.27544 * 178.98694 * 13 12 10 15 15 C 1.55161 * 102.94040 * 337.81168 * 14 13 12 16 16 O 1.42903 * 111.00309 * 277.38547 * 15 14 13 17 17 C 1.50696 * 111.00179 * 153.57607 * 15 14 13 18 18 H 1.08003 * 119.99607 * 243.51886 * 17 15 14 19 19 C 1.37879 * 120.00584 * 63.24935 * 17 15 14 20 20 N 1.31521 * 119.99465 * 354.29255 * 19 17 15 21 21 Si 1.86794 * 120.00270 * 174.29525 * 19 17 15 22 22 H 1.48502 * 109.46911 * 94.98366 * 21 19 17 23 23 H 1.48502 * 109.47227 * 214.97830 * 21 19 17 24 24 H 1.48496 * 109.47481 * 334.98199 * 21 19 17 25 25 C 1.47426 * 125.64631 * 180.02562 * 12 10 9 26 26 H 1.08997 * 109.46741 * 299.99715 * 1 2 3 27 27 H 1.09000 * 109.47302 * 59.99764 * 1 2 3 28 28 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46690 * 240.00280 * 2 1 3 30 30 H 1.09002 * 109.46556 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46991 * 299.99831 * 3 2 1 32 32 H 1.08997 * 109.47130 * 60.00524 * 3 2 1 33 33 H 1.08999 * 109.46771 * 54.99898 * 4 2 1 34 34 H 1.08995 * 109.47335 * 294.99753 * 4 2 1 35 35 H 1.08998 * 109.47674 * 59.99738 * 8 5 4 36 36 H 1.09004 * 109.47230 * 299.99888 * 8 5 4 37 37 H 1.08998 * 109.47023 * 59.99089 * 9 8 5 38 38 H 1.09004 * 109.46341 * 299.99546 * 9 8 5 39 39 H 1.09007 * 109.87765 * 59.56967 * 13 12 10 40 40 H 1.09001 * 110.01372 * 298.48159 * 13 12 10 41 41 H 1.09001 * 110.72598 * 219.44849 * 14 13 12 42 42 H 1.08996 * 110.71948 * 96.17114 * 14 13 12 43 43 H 0.96701 * 114.00052 * 295.42104 * 16 15 14 44 44 H 0.97000 * 119.99793 * 180.02562 * 20 19 17 45 45 H 1.08997 * 110.37052 * 85.24270 * 25 12 10 46 46 H 1.09004 * 110.36714 * 322.91737 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 3.8479 -0.8514 1.1764 6 8 4.3992 0.4564 1.2466 7 8 4.1977 -1.6943 0.0871 8 6 4.2235 -1.7214 2.7232 9 6 5.7354 -1.9252 2.8397 10 6 6.0475 -2.6474 4.1250 11 8 5.1491 -2.9672 4.8744 12 7 7.3249 -2.9379 4.4417 13 6 8.5050 -2.6108 3.6284 14 6 9.7452 -3.1119 4.3979 15 6 9.2384 -3.1872 5.8625 16 8 9.3001 -1.9060 6.4923 17 6 10.0140 -4.2111 6.6505 18 1 9.5112 -5.0797 7.0493 19 6 11.3666 -4.0419 6.8575 20 7 12.0018 -3.0486 6.2747 21 14 12.2969 -5.2234 7.9656 22 1 12.9164 -6.2917 7.1408 23 1 13.3576 -4.4849 8.6970 24 1 11.3564 -5.8329 8.9399 25 6 7.7700 -3.6375 5.6607 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -1.7198 1.2950 34 1 1.7518 -0.1584 2.1369 35 1 3.7247 -2.6905 2.7254 36 1 3.8709 -1.1295 3.5679 37 1 6.2339 -0.9559 2.8377 38 1 6.0883 -2.5171 1.9951 39 1 8.5687 -1.5321 3.4848 40 1 8.4418 -3.1102 2.6615 41 1 10.5668 -2.4011 4.3102 42 1 10.0469 -4.0974 4.0431 43 1 10.1976 -1.5609 6.5949 44 1 12.9535 -2.9298 6.4200 45 1 7.7205 -4.7170 5.5182 46 1 7.1609 -3.3383 6.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:12 Heat of formation + Delta-G solvation = -193.483039 kcal Electronic energy + Delta-G solvation = -27128.106202 eV Core-core repulsion = 23143.725093 eV Total energy + Delta-G solvation = -3984.381110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12197 -39.06060 -38.04293 -37.44911 -36.85111 -36.11659 -34.23821 -34.21568 -31.53102 -30.08258 -28.98627 -28.06515 -27.46571 -25.60440 -23.68483 -21.64948 -21.36140 -20.25318 -19.85889 -19.16492 -18.60345 -17.59820 -17.46339 -17.00270 -16.84200 -16.82783 -16.50040 -15.91757 -15.80543 -15.50501 -15.00872 -14.76916 -14.64694 -14.21374 -14.00843 -13.76447 -13.64870 -13.45444 -13.41566 -13.25088 -13.15039 -13.02342 -12.99464 -12.98780 -12.65658 -12.54714 -12.45257 -12.41032 -12.28261 -11.96801 -11.94015 -11.86266 -11.73121 -11.26875 -11.17550 -10.92114 -10.68212 -10.14833 -9.62647 -8.24615 -6.39215 -1.01380 1.40912 1.45213 1.52593 1.54598 1.80896 1.97538 2.39411 2.63645 2.99531 3.08150 3.35103 3.52894 3.60210 3.72821 3.81070 3.85620 4.01423 4.05685 4.27791 4.32329 4.35647 4.38257 4.50816 4.57790 4.59342 4.68024 4.70067 4.81451 4.82623 4.88831 4.94587 5.02257 5.16037 5.21127 5.24506 5.37125 5.40794 5.44172 5.55907 5.77060 6.06055 6.55729 6.64583 7.05006 7.30684 7.35933 8.80551 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.038019 B = 0.002209 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.302268 B =12671.008592 C =12898.829350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.190 4.190 4 C -0.591 4.591 5 S 2.425 3.575 6 O -0.963 6.963 7 O -0.972 6.972 8 C -0.596 4.596 9 C -0.133 4.133 10 C 0.525 3.475 11 O -0.584 6.584 12 N -0.611 5.611 13 C 0.096 3.904 14 C -0.126 4.126 15 C 0.232 3.768 16 O -0.592 6.592 17 C -0.562 4.562 18 H 0.055 0.945 19 C 0.037 3.963 20 N -0.904 5.904 21 Si 0.959 3.041 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.276 1.276 25 C 0.125 3.875 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.377 0.623 44 H 0.271 0.729 45 H 0.074 0.926 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.383 5.724 -13.496 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.248 4.248 4 C -0.724 4.724 5 S 2.612 3.388 6 O -0.961 6.961 7 O -0.969 6.969 8 C -0.724 4.724 9 C -0.173 4.173 10 C 0.314 3.686 11 O -0.466 6.466 12 N -0.343 5.343 13 C -0.026 4.026 14 C -0.165 4.165 15 C 0.192 3.808 16 O -0.400 6.400 17 C -0.600 4.600 18 H 0.073 0.927 19 C -0.165 4.165 20 N -0.543 5.543 21 Si 0.785 3.215 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.201 1.201 25 C 0.002 3.998 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.768 5.881 -13.802 24.028 hybrid contribution 1.069 -0.875 1.531 2.062 sum -17.699 5.006 -12.271 22.111 Atomic orbital electron populations 1.21826 0.91983 1.03034 1.03065 1.20960 0.99231 0.95985 0.94995 1.22431 1.02485 0.95883 1.03973 1.30280 1.21019 1.12517 1.08546 1.07749 0.79921 0.74784 0.76373 1.93538 1.77923 1.37966 1.86630 1.93546 1.83252 1.69332 1.50773 1.30176 1.02499 1.16817 1.22916 1.21433 0.95349 1.03843 0.96691 1.20551 0.80582 0.79110 0.88338 1.90628 1.45787 1.56387 1.53770 1.48693 1.06292 1.56706 1.22629 1.22339 0.84453 1.01042 0.94721 1.22966 0.95806 1.01138 0.96546 1.19786 0.89452 0.81894 0.89656 1.86127 1.33861 1.36893 1.83140 1.21648 0.94226 1.08139 1.36009 0.92657 1.25602 0.97889 0.97080 0.95943 1.69827 1.10432 1.31549 1.42464 0.85537 0.78047 0.78938 0.79025 1.19933 1.20570 1.20124 1.22154 0.95377 0.95822 0.86461 0.91485 0.91450 0.91414 0.89983 0.91875 0.90651 0.90869 0.81985 0.82218 0.83035 0.83321 0.86213 0.85631 0.90611 0.89015 0.90515 0.91888 0.77361 0.91979 0.90757 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 2 C -0.09 -1.06 2.92 -10.79 -0.03 -1.09 16 3 C -0.19 -2.61 8.83 71.98 0.64 -1.98 16 4 C -0.59 -5.51 5.26 71.98 0.38 -5.13 16 5 S 2.42 41.21 4.51 -56.49 -0.25 40.96 16 6 O -0.96 -22.32 15.46 -127.37 -1.97 -24.29 16 7 O -0.97 -22.94 18.10 -127.37 -2.30 -25.24 16 8 C -0.60 -10.82 5.09 71.98 0.37 -10.46 16 9 C -0.13 -3.25 4.90 29.85 0.15 -3.10 16 10 C 0.53 18.35 7.85 87.66 0.69 19.03 16 11 O -0.58 -23.74 16.24 -3.04 -0.05 -23.79 16 12 N -0.61 -23.20 3.33 -811.82 -2.70 -25.90 16 13 C 0.10 3.25 6.49 86.73 0.56 3.81 16 14 C -0.13 -5.26 5.37 31.78 0.17 -5.09 16 15 C 0.23 11.11 0.88 -10.15 -0.01 11.10 16 16 O -0.59 -29.96 13.17 -148.98 -1.96 -31.93 16 17 C -0.56 -29.11 8.25 25.60 0.21 -28.90 16 18 H 0.06 2.89 7.79 -2.91 -0.02 2.86 16 19 C 0.04 1.84 5.26 84.65 0.45 2.29 16 20 N -0.90 -45.58 10.76 21.45 0.23 -45.35 16 21 Si 0.96 40.76 29.54 68.60 2.03 42.79 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 C 0.12 5.54 6.08 86.85 0.53 6.07 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.14 5.41 -2.39 -0.01 1.13 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.15 2.33 8.10 -2.39 -0.02 2.31 16 36 H 0.15 2.42 8.10 -2.39 -0.02 2.40 16 37 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.13 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.08 3.37 7.52 -2.39 -0.02 3.35 16 42 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 43 H 0.38 19.07 7.57 -74.06 -0.56 18.51 16 44 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 45 H 0.07 3.22 8.03 -2.39 -0.02 3.20 16 46 H 0.05 2.35 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -71.20 383.41 -1.82 -73.02 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.41 Total: 33.62 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.76 Total: -13.90 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.47 Total: -71.24 kcal Atomic # 8 Polarization: -98.96 SS G_CDS: -6.29 Total: -105.25 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 41.21 SS G_CDS: -0.25 Total: 40.96 kcal Total: -71.20 -1.82 -73.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.464 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds