Wall clock time and date at job start Tue Mar 31 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.50693 * 109.47223 * 239.99803 * 2 1 3 5 5 H 1.08008 * 120.00246 * 240.83663 * 4 2 1 6 6 C 1.37880 * 120.00349 * 60.83584 * 4 2 1 7 7 N 1.31508 * 120.00480 * 194.57369 * 6 4 2 8 8 Si 1.86799 * 119.99699 * 14.58116 * 6 4 2 9 9 H 1.48501 * 109.47483 * 84.44975 * 8 6 4 10 10 H 1.48500 * 109.47123 * 204.45274 * 8 6 4 11 11 H 1.48501 * 109.47142 * 324.45256 * 8 6 4 12 12 C 1.53002 * 109.46837 * 119.99553 * 2 1 3 13 13 S 1.81396 * 109.47381 * 300.00373 * 12 2 1 14 14 O 1.42096 * 110.54574 * 68.37354 * 13 12 2 15 15 O 1.42104 * 110.54235 * 291.62433 * 13 12 2 16 16 N 1.65599 * 104.44931 * 180.02562 * 13 12 2 17 17 C 1.46496 * 120.00301 * 64.99658 * 16 13 12 18 18 C 1.53001 * 109.47219 * 165.00260 * 17 16 13 19 19 H 1.09000 * 109.47274 * 54.99719 * 18 17 16 20 20 C 1.50706 * 109.46716 * 294.99997 * 18 17 16 21 21 O 1.20829 * 119.99743 * 239.99895 * 20 18 17 22 22 O 1.34226 * 120.00206 * 60.00121 * 20 18 17 23 23 C 1.52996 * 109.47117 * 175.00287 * 18 17 16 24 24 C 1.53781 * 113.61309 * 299.99458 * 23 18 17 25 25 C 1.53776 * 87.08348 * 220.01925 * 24 23 18 26 26 C 1.53783 * 87.17333 * 25.39291 * 25 24 23 27 27 H 1.08996 * 109.47677 * 310.23817 * 1 2 3 28 28 H 1.09007 * 109.47048 * 70.23471 * 1 2 3 29 29 H 1.08997 * 109.47210 * 190.23272 * 1 2 3 30 30 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46991 * 299.99461 * 3 2 1 32 32 H 1.08995 * 109.47478 * 59.99881 * 3 2 1 33 33 H 0.97001 * 119.99941 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46737 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46648 * 60.00150 * 12 2 1 36 36 H 0.97003 * 119.99383 * 244.99448 * 16 13 12 37 37 H 1.09002 * 109.47139 * 45.00186 * 17 16 13 38 38 H 1.09000 * 109.47316 * 285.00043 * 17 16 13 39 39 H 0.96699 * 117.00161 * 179.97438 * 22 20 18 40 40 H 1.08998 * 112.85596 * 71.19465 * 23 18 17 41 41 H 1.09001 * 113.61156 * 105.47257 * 24 23 18 42 42 H 1.08995 * 113.61592 * 334.57338 * 24 23 18 43 43 H 1.08998 * 113.61501 * 139.97875 * 25 24 23 44 44 H 1.08997 * 113.61945 * 270.80272 * 25 24 23 45 45 H 1.08994 * 113.61527 * 89.15420 * 26 25 24 46 46 H 1.08997 * 113.61694 * 220.05990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6421 -1.5964 -1.1313 6 6 1.7136 -0.2295 -2.4826 7 7 1.8970 -0.9847 -3.5435 8 14 1.0213 1.4951 -2.6724 9 1 2.1372 2.4736 -2.7240 10 1 0.2329 1.5766 -3.9282 11 1 0.1434 1.8061 -1.5157 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0540 -0.7399 3.9937 17 6 3.5024 -0.7962 4.2055 18 6 3.7921 -1.3321 5.6090 19 1 3.2960 -2.2936 5.7404 20 6 3.2767 -0.3564 6.6355 21 8 4.0385 0.1461 7.4273 22 8 1.9713 -0.0457 6.6700 23 6 5.3016 -1.5085 5.7860 24 6 5.9290 -2.4897 4.7817 25 6 6.7929 -3.0051 5.9448 26 6 5.6811 -2.5150 6.8875 27 1 -0.3634 0.6638 0.7844 28 1 -0.3633 0.3475 -0.9672 29 1 -0.3633 -1.0113 0.1826 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6724 -0.6465 -4.4244 34 1 3.1299 -0.7216 1.2491 35 1 1.6765 -1.7489 1.2493 36 1 1.4572 -1.2144 4.5934 37 1 3.9236 0.2041 4.1044 38 1 3.9526 -1.4566 3.4644 39 1 1.6878 0.5846 7.3464 40 1 5.8330 -0.5597 5.8596 41 1 6.5031 -2.0011 3.9945 42 1 5.2270 -3.2299 4.3978 43 1 6.9215 -4.0875 5.9470 44 1 7.7335 -2.4669 6.0620 45 1 4.9113 -3.2621 7.0803 46 1 6.0554 -2.0468 7.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596024607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:45 Heat of formation + Delta-G solvation = -136.229239 kcal Electronic energy + Delta-G solvation = -28366.717438 eV Core-core repulsion = 24384.819040 eV Total energy + Delta-G solvation = -3981.898398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89779 -38.93578 -36.74516 -36.73001 -36.29826 -35.71969 -35.42328 -31.96566 -31.10088 -27.44267 -26.39182 -26.19945 -25.09904 -24.94996 -24.29722 -21.06218 -20.07969 -19.71832 -18.82635 -18.21986 -17.41431 -17.14041 -16.64363 -16.16274 -15.77262 -15.59444 -15.30150 -15.22123 -14.94282 -14.48047 -14.17351 -13.45413 -13.20472 -13.05592 -13.04833 -12.85945 -12.72595 -12.49623 -12.40008 -12.15562 -11.86985 -11.70833 -11.61768 -11.56942 -11.54569 -11.10239 -11.02711 -10.93347 -10.81677 -10.76360 -10.55123 -10.49579 -10.18594 -10.07193 -10.04082 -9.46671 -9.02083 -8.75911 -8.48769 -6.21011 -4.18396 0.68065 1.97871 2.76719 3.01713 3.24428 3.33813 3.38044 4.05772 4.17656 4.19784 4.32884 4.35003 4.50139 4.60618 4.67047 4.76144 4.86377 5.08351 5.11457 5.24373 5.35406 5.37184 5.41341 5.47900 5.50670 5.57867 5.65924 5.72640 5.77339 5.91077 5.97542 6.17240 6.18568 6.30566 6.30786 6.42622 6.47759 6.68878 6.85653 7.03691 7.12076 7.29852 7.60976 7.68875 8.36877 8.81509 9.43145 10.91453 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003523 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.368282 B = 7945.667257 C = 8927.086995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.054 3.946 3 C -0.182 4.182 4 C -0.508 4.508 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.281 1.281 10 H -0.301 1.301 11 H -0.246 1.246 12 C -0.576 4.576 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.965 6.965 16 N -1.124 6.124 17 C 0.124 3.876 18 C -0.076 4.076 19 H 0.117 0.883 20 C 0.486 3.514 21 O -0.513 6.513 22 O -0.510 6.510 23 C -0.098 4.098 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.134 4.134 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.417 0.583 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.410 0.590 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -3.728 20.043 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.051 3.949 3 C -0.238 4.238 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.705 3.295 9 H -0.208 1.208 10 H -0.229 1.229 11 H -0.172 1.172 12 C -0.709 4.709 13 S 2.690 3.310 14 O -0.952 6.952 15 O -0.955 6.955 16 N -0.883 5.883 17 C -0.003 4.003 18 C -0.097 4.097 19 H 0.135 0.865 20 C 0.328 3.672 21 O -0.401 6.401 22 O -0.321 6.321 23 C -0.117 4.117 24 C -0.175 4.175 25 C -0.178 4.178 26 C -0.171 4.171 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.269 0.731 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.375 -3.017 19.762 20.701 hybrid contribution -0.367 0.612 0.165 0.733 sum 5.008 -2.404 19.927 20.687 Atomic orbital electron populations 1.22680 0.97014 1.01350 1.01757 1.18230 0.92527 0.91708 0.92397 1.22821 1.02348 0.97879 1.00798 1.20643 1.33946 1.12567 0.87509 0.90383 1.24959 0.94541 0.97269 0.95804 1.69930 1.47872 1.35777 0.98912 0.87449 0.79820 0.85705 0.76524 1.20811 1.22923 1.17187 1.30396 1.11771 1.13149 1.15611 1.05612 0.74495 0.75247 0.75687 1.93570 1.29251 1.86584 1.85751 1.93542 1.78166 1.38237 1.85521 1.55748 1.13488 1.71546 1.47485 1.21234 0.81337 1.02881 0.94893 1.21408 0.97595 0.98217 0.92462 0.86522 1.23319 0.79890 0.80542 0.83460 1.90710 1.57594 1.51566 1.40236 1.84547 1.27266 1.61970 1.58317 1.22548 0.91222 0.99758 0.98172 1.23027 0.99210 0.98469 0.96827 1.22782 0.97627 1.01083 0.96357 1.22979 0.98759 0.97956 0.97422 0.94450 0.91459 0.92310 0.91787 0.93030 0.93184 0.92410 0.85763 0.85360 0.74817 0.89600 0.89629 0.73145 0.87653 0.90506 0.89367 0.91229 0.90039 0.90161 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 6.95 37.16 0.26 -3.52 16 2 C 0.05 1.21 0.52 -155.66 -0.08 1.13 16 3 C -0.18 -4.00 7.22 37.16 0.27 -3.74 16 4 C -0.51 -13.37 8.62 -34.44 -0.30 -13.66 16 5 H 0.08 2.17 7.99 -52.48 -0.42 1.75 16 6 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 7 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 8 Si 0.87 21.31 22.79 -169.99 -3.87 17.44 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 11 H -0.25 -5.63 4.67 56.52 0.26 -5.37 16 12 C -0.58 -10.01 4.99 37.16 0.19 -9.82 16 13 S 2.59 42.61 4.50 -107.50 -0.48 42.13 16 14 O -0.96 -18.20 15.93 -57.54 -0.92 -19.12 16 15 O -0.96 -18.22 15.12 -57.54 -0.87 -19.09 16 16 N -1.12 -13.08 5.06 -10.61 -0.05 -13.14 16 17 C 0.12 1.21 5.40 -4.04 -0.02 1.19 16 18 C -0.08 -0.64 2.10 -91.77 -0.19 -0.83 16 19 H 0.12 0.74 7.95 -51.93 -0.41 0.32 16 20 C 0.49 5.01 7.62 36.01 0.27 5.29 16 21 O -0.51 -6.56 16.60 -18.75 -0.31 -6.87 16 22 O -0.51 -4.61 11.80 -39.25 -0.46 -5.07 16 23 C -0.10 -0.77 2.54 -89.71 -0.23 -0.99 16 24 C -0.14 -0.92 6.59 -25.92 -0.17 -1.09 16 25 C -0.14 -0.90 8.08 -25.92 -0.21 -1.11 16 26 C -0.13 -0.95 7.62 -25.82 -0.20 -1.15 16 27 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 28 H 0.07 1.54 4.32 -51.93 -0.22 1.32 16 29 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.05 1.18 2.28 -51.93 -0.12 1.06 16 32 H 0.05 1.04 5.46 -51.93 -0.28 0.75 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 1.89 8.14 -51.92 -0.42 1.46 16 35 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 36 H 0.42 4.19 7.81 -34.46 -0.27 3.92 16 37 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 38 H 0.09 0.66 7.28 -51.93 -0.38 0.29 16 39 H 0.41 2.22 9.10 45.56 0.41 2.64 16 40 H 0.11 0.94 7.86 -51.93 -0.41 0.53 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.51 7.97 -51.93 -0.41 0.09 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -35.18 361.59 -7.56 -42.74 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.31 Total: 7.12 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -0.50 Total: -26.26 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.72 Total: -38.47 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -2.56 Total: -50.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -3.87 Total: 17.44 kcal Atomic # 16 Polarization: 42.61 SS G_CDS: -0.48 Total: 42.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.18 -7.56 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596024607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.488 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds