Wall clock time and date at job start Tue Mar 31 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.50693 * 109.47223 * 239.99803 * 2 1 3 5 5 H 1.08008 * 120.00246 * 240.83663 * 4 2 1 6 6 C 1.37880 * 120.00349 * 60.83584 * 4 2 1 7 7 N 1.31508 * 120.00480 * 194.57369 * 6 4 2 8 8 Si 1.86799 * 119.99699 * 14.58116 * 6 4 2 9 9 H 1.48501 * 109.47483 * 84.44975 * 8 6 4 10 10 H 1.48500 * 109.47123 * 204.45274 * 8 6 4 11 11 H 1.48501 * 109.47142 * 324.45256 * 8 6 4 12 12 C 1.53002 * 109.46837 * 119.99553 * 2 1 3 13 13 S 1.81396 * 109.47381 * 300.00373 * 12 2 1 14 14 O 1.42096 * 110.54574 * 68.37354 * 13 12 2 15 15 O 1.42104 * 110.54235 * 291.62433 * 13 12 2 16 16 N 1.65599 * 104.44931 * 180.02562 * 13 12 2 17 17 C 1.46496 * 120.00301 * 64.99658 * 16 13 12 18 18 C 1.53001 * 109.47219 * 165.00260 * 17 16 13 19 19 H 1.09000 * 109.47274 * 54.99719 * 18 17 16 20 20 C 1.50706 * 109.46716 * 294.99997 * 18 17 16 21 21 O 1.20829 * 119.99743 * 239.99895 * 20 18 17 22 22 O 1.34226 * 120.00206 * 60.00121 * 20 18 17 23 23 C 1.52996 * 109.47117 * 175.00287 * 18 17 16 24 24 C 1.53781 * 113.61309 * 299.99458 * 23 18 17 25 25 C 1.53776 * 87.08348 * 220.01925 * 24 23 18 26 26 C 1.53783 * 87.17333 * 25.39291 * 25 24 23 27 27 H 1.08996 * 109.47677 * 310.23817 * 1 2 3 28 28 H 1.09007 * 109.47048 * 70.23471 * 1 2 3 29 29 H 1.08997 * 109.47210 * 190.23272 * 1 2 3 30 30 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46991 * 299.99461 * 3 2 1 32 32 H 1.08995 * 109.47478 * 59.99881 * 3 2 1 33 33 H 0.97001 * 119.99941 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46737 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46648 * 60.00150 * 12 2 1 36 36 H 0.97003 * 119.99383 * 244.99448 * 16 13 12 37 37 H 1.09002 * 109.47139 * 45.00186 * 17 16 13 38 38 H 1.09000 * 109.47316 * 285.00043 * 17 16 13 39 39 H 0.96699 * 117.00161 * 179.97438 * 22 20 18 40 40 H 1.08998 * 112.85596 * 71.19465 * 23 18 17 41 41 H 1.09001 * 113.61156 * 105.47257 * 24 23 18 42 42 H 1.08995 * 113.61592 * 334.57338 * 24 23 18 43 43 H 1.08998 * 113.61501 * 139.97875 * 25 24 23 44 44 H 1.08997 * 113.61945 * 270.80272 * 25 24 23 45 45 H 1.08994 * 113.61527 * 89.15420 * 26 25 24 46 46 H 1.08997 * 113.61694 * 220.05990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6421 -1.5964 -1.1313 6 6 1.7136 -0.2295 -2.4826 7 7 1.8970 -0.9847 -3.5435 8 14 1.0213 1.4951 -2.6724 9 1 2.1372 2.4736 -2.7240 10 1 0.2329 1.5766 -3.9282 11 1 0.1434 1.8061 -1.5157 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1339 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4101 2.8544 16 7 2.0540 -0.7399 3.9937 17 6 3.5024 -0.7962 4.2055 18 6 3.7921 -1.3321 5.6090 19 1 3.2960 -2.2936 5.7404 20 6 3.2767 -0.3564 6.6355 21 8 4.0385 0.1461 7.4273 22 8 1.9713 -0.0457 6.6700 23 6 5.3016 -1.5085 5.7860 24 6 5.9290 -2.4897 4.7817 25 6 6.7929 -3.0051 5.9448 26 6 5.6811 -2.5150 6.8875 27 1 -0.3634 0.6638 0.7844 28 1 -0.3633 0.3475 -0.9672 29 1 -0.3633 -1.0113 0.1826 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6724 -0.6465 -4.4244 34 1 3.1299 -0.7216 1.2491 35 1 1.6765 -1.7489 1.2493 36 1 1.4572 -1.2144 4.5934 37 1 3.9236 0.2041 4.1044 38 1 3.9526 -1.4566 3.4644 39 1 1.6878 0.5846 7.3464 40 1 5.8330 -0.5597 5.8596 41 1 6.5031 -2.0011 3.9945 42 1 5.2270 -3.2299 4.3978 43 1 6.9215 -4.0875 5.9470 44 1 7.7335 -2.4669 6.0620 45 1 4.9113 -3.2621 7.0803 46 1 6.0554 -2.0468 7.7979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596024607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:44 Heat of formation + Delta-G solvation = -163.239495 kcal Electronic energy + Delta-G solvation = -28367.888691 eV Core-core repulsion = 24384.819040 eV Total energy + Delta-G solvation = -3983.069651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63253 -39.54912 -38.46875 -38.10585 -37.11819 -36.90059 -36.48586 -34.01619 -31.89050 -28.94092 -28.12288 -27.07243 -26.76578 -25.65742 -25.03035 -21.78831 -21.57853 -20.55724 -19.99467 -19.08384 -18.66239 -18.08867 -17.89381 -17.62038 -17.11141 -16.85319 -16.52567 -16.11471 -15.81587 -15.37938 -15.09989 -14.98758 -14.84740 -14.74273 -14.17713 -14.13113 -13.83629 -13.66600 -13.24160 -13.21061 -13.15185 -13.01553 -12.71432 -12.66282 -12.56627 -12.54518 -12.53140 -12.33250 -11.97825 -11.82829 -11.78702 -11.65349 -11.40576 -11.13727 -11.07947 -10.95055 -10.66413 -10.52704 -10.26274 -8.32718 -6.31356 -0.62512 1.20288 1.31246 1.37162 1.44043 1.87059 2.12578 2.31353 2.84244 3.02140 3.30209 3.46870 3.58534 3.77647 3.80632 3.95209 4.05246 4.11177 4.14674 4.27523 4.28395 4.45381 4.51432 4.57928 4.63708 4.68825 4.72636 4.79342 4.89063 4.92832 4.96852 4.98983 5.03186 5.18098 5.18652 5.22613 5.37892 5.41892 5.55452 5.62141 5.65761 5.67084 6.18033 6.29135 6.72049 7.00032 7.33099 8.82889 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.003523 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.368282 B = 7945.667257 C = 8927.086995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 C -0.187 4.187 4 C -0.500 4.500 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.308 1.308 11 H -0.223 1.223 12 C -0.584 4.584 13 S 2.616 3.384 14 O -0.986 6.986 15 O -0.989 6.989 16 N -1.107 6.107 17 C 0.114 3.886 18 C -0.071 4.071 19 H 0.144 0.856 20 C 0.484 3.516 21 O -0.544 6.544 22 O -0.512 6.512 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.133 4.133 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.265 0.735 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.428 0.572 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.424 0.576 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -4.146 21.674 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.244 4.244 4 C -0.538 4.538 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.237 1.237 11 H -0.147 1.147 12 C -0.716 4.716 13 S 2.712 3.288 14 O -0.976 6.976 15 O -0.979 6.979 16 N -0.870 5.870 17 C -0.012 4.012 18 C -0.091 4.091 19 H 0.162 0.838 20 C 0.327 3.673 21 O -0.435 6.435 22 O -0.325 6.325 23 C -0.120 4.120 24 C -0.172 4.172 25 C -0.177 4.177 26 C -0.171 4.171 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.285 0.715 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.111 0.889 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.278 -3.424 21.412 22.317 hybrid contribution -0.300 0.682 -0.230 0.780 sum 4.977 -2.742 21.182 21.931 Atomic orbital electron populations 1.22699 0.96952 1.02204 1.01469 1.18219 0.92684 0.92077 0.92914 1.22855 1.03046 0.97606 1.00907 1.20937 1.32255 1.11589 0.89065 0.92769 1.25629 0.95458 1.00221 0.95836 1.70044 1.50423 1.37516 0.99433 0.86772 0.79805 0.82183 0.76885 1.20400 1.23666 1.14718 1.30404 1.13309 1.13688 1.14185 1.04647 0.73597 0.74824 0.75739 1.93534 1.31013 1.86919 1.86169 1.93514 1.78490 1.39955 1.85904 1.55283 1.14654 1.71079 1.45948 1.21507 0.79875 1.03246 0.96613 1.21485 0.98043 0.98775 0.90794 0.83802 1.23747 0.79892 0.80300 0.83312 1.90703 1.58336 1.52780 1.41641 1.84515 1.26683 1.62360 1.58932 1.22527 0.90785 0.99467 0.99270 1.23066 0.99315 0.98240 0.96595 1.22778 0.97331 1.01622 0.95942 1.23003 0.99377 0.97933 0.96767 0.93231 0.92700 0.91513 0.90952 0.94042 0.91850 0.92568 0.83672 0.83706 0.73464 0.90685 0.86950 0.71514 0.89311 0.90512 0.87986 0.90303 0.90289 0.88926 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.47 6.95 71.98 0.50 -6.97 16 2 C 0.04 1.86 0.52 -52.93 -0.03 1.83 16 3 C -0.19 -7.86 7.22 71.98 0.52 -7.34 16 4 C -0.50 -26.03 8.62 25.60 0.22 -25.81 16 5 H 0.05 3.02 7.99 -2.91 -0.02 2.99 16 6 C 0.03 1.51 5.31 84.66 0.45 1.96 16 7 N -0.94 -55.87 13.96 21.45 0.30 -55.57 16 8 Si 0.91 43.43 22.79 68.60 1.56 45.00 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 10 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 11 H -0.22 -9.68 4.67 99.48 0.46 -9.22 16 12 C -0.58 -18.73 4.99 71.98 0.36 -18.37 16 13 S 2.62 78.90 4.50 -56.49 -0.25 78.64 16 14 O -0.99 -34.84 15.93 -127.65 -2.03 -36.87 16 15 O -0.99 -35.00 15.12 -127.65 -1.93 -36.93 16 16 N -1.11 -22.27 5.06 -187.49 -0.95 -23.21 16 17 C 0.11 1.88 5.40 86.38 0.47 2.35 16 18 C -0.07 -0.98 2.10 -11.54 -0.02 -1.01 16 19 H 0.14 1.24 7.95 -2.39 -0.02 1.22 16 20 C 0.48 9.12 7.62 71.24 0.54 9.66 16 21 O -0.54 -13.47 16.60 21.95 0.36 -13.11 16 22 O -0.51 -8.15 11.80 -51.38 -0.61 -8.76 16 23 C -0.10 -1.39 2.54 -10.21 -0.03 -1.42 16 24 C -0.13 -1.44 6.59 31.12 0.21 -1.23 16 25 C -0.14 -1.50 8.08 31.12 0.25 -1.25 16 26 C -0.13 -1.66 7.62 31.18 0.24 -1.42 16 27 H 0.05 1.96 6.21 -2.39 -0.01 1.95 16 28 H 0.05 2.43 4.32 -2.38 -0.01 2.42 16 29 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.04 1.81 2.28 -2.39 -0.01 1.80 16 32 H 0.06 2.48 5.46 -2.39 -0.01 2.47 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.15 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 36 H 0.43 7.10 7.81 -96.75 -0.76 6.35 16 37 H 0.07 1.46 7.69 -2.39 -0.02 1.44 16 38 H 0.11 1.30 7.28 -2.39 -0.02 1.29 16 39 H 0.42 3.87 9.10 -74.06 -0.67 3.20 16 40 H 0.09 1.52 7.86 -2.39 -0.02 1.51 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.83 8.10 -2.39 -0.02 0.81 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 0.92 7.97 -2.39 -0.02 0.90 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.44 361.59 -0.53 -75.97 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.66 Total: 23.86 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 3.67 Total: -49.01 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -0.65 Total: -78.79 kcal Atomic # 8 Polarization: -91.47 SS G_CDS: -4.20 Total: -95.67 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.56 Total: 45.00 kcal Atomic # 16 Polarization: 78.90 SS G_CDS: -0.25 Total: 78.64 kcal Total: -75.44 -0.53 -75.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596024607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.271 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds