Wall clock time and date at job start Tue Mar 31 2020 17:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99460 * 2 1 4 4 H 1.08996 * 110.92277 * 327.55046 * 3 2 1 5 5 C 1.54909 * 111.00400 * 91.45852 * 3 2 1 6 6 N 1.47428 * 104.83421 * 155.07701 * 5 3 2 7 7 C 1.34774 * 125.64738 * 155.90600 * 6 5 3 8 8 O 1.21548 * 119.99714 * 175.82634 * 7 6 5 9 9 C 1.47882 * 120.00127 * 355.82584 * 7 6 5 10 10 C 1.39915 * 120.02629 * 20.64071 * 9 7 6 11 11 C 1.38338 * 120.36038 * 179.97438 * 10 9 7 12 12 C 1.37750 * 120.40937 * 0.02562 * 11 10 9 13 13 C 1.40751 * 120.04039 * 359.97438 * 12 11 10 14 14 C 1.41439 * 120.17396 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00175 * 24.50752 * 14 13 12 16 16 C 1.39943 * 119.99591 * 204.50491 * 14 13 12 17 17 N 1.30821 * 119.99882 * 17.12828 * 16 14 13 18 18 Si 1.86804 * 119.99726 * 197.12657 * 16 14 13 19 19 H 1.48502 * 109.46916 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46880 * 120.00136 * 18 16 14 21 21 H 1.48498 * 109.46775 * 239.99981 * 18 16 14 22 22 C 1.39000 * 120.02596 * 200.37248 * 9 7 6 23 23 C 1.47025 * 108.69976 * 335.87202 * 6 5 3 24 24 C 1.53006 * 109.87918 * 120.63238 * 23 6 5 25 25 C 1.50699 * 109.88032 * 241.63643 * 23 6 5 26 26 O 1.20825 * 119.99646 * 143.55310 * 25 23 6 27 27 O 1.34231 * 120.00062 * 323.82508 * 25 23 6 28 28 C 1.54316 * 107.27454 * 1.05798 * 23 6 5 29 29 H 1.09000 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47253 * 299.99930 * 1 2 3 31 31 H 1.08995 * 109.47650 * 59.99723 * 1 2 3 32 32 H 1.09005 * 110.36688 * 36.24095 * 5 3 2 33 33 H 1.08998 * 110.36997 * 273.91730 * 5 3 2 34 34 H 1.08005 * 119.82069 * 0.02562 * 10 9 7 35 35 H 1.08001 * 119.79220 * 180.02562 * 11 10 9 36 36 H 1.08000 * 119.97802 * 179.97438 * 12 11 10 37 37 H 0.97007 * 119.99567 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.19966 * 359.97438 * 22 9 7 39 39 H 1.09002 * 109.46880 * 181.71449 * 24 23 6 40 40 H 1.08999 * 109.46919 * 301.71239 * 24 23 6 41 41 H 1.08995 * 109.47188 * 61.71490 * 24 23 6 42 42 H 0.96696 * 116.99710 * 179.72563 * 27 25 23 43 43 H 1.08999 * 110.72178 * 140.55693 * 28 23 6 44 44 H 1.08999 * 110.71831 * 263.82893 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0105 -0.5463 5 6 2.2695 1.7978 1.4457 6 7 3.3611 2.7807 1.3196 7 6 3.6194 3.7827 2.1830 8 8 4.5944 4.4898 2.0193 9 6 2.7167 4.0219 3.3297 10 6 1.8720 3.0017 3.7805 11 6 1.0251 3.2177 4.8528 12 6 1.0032 4.4394 5.4888 13 6 1.8457 5.4778 5.0495 14 6 1.8259 6.7331 5.7008 15 1 1.4988 6.8036 6.7276 16 6 2.2301 7.8838 5.0146 17 7 2.3036 7.8746 3.7085 18 14 2.6647 9.4330 5.9637 19 1 2.5015 9.1842 7.4186 20 1 4.0736 9.8078 5.6810 21 1 1.7651 10.5381 5.5459 22 6 2.7107 5.2587 3.9640 23 6 4.1215 2.4862 0.0962 24 6 4.0879 3.6951 -0.8410 25 6 5.5479 2.1502 0.4479 26 8 6.1410 1.3037 -0.1778 27 8 6.1576 2.7875 1.4598 28 6 3.4485 1.2739 -0.5811 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.5788 0.9668 2.0797 33 1 1.3761 2.2730 1.8507 34 1 1.8817 2.0399 3.2891 35 1 0.3772 2.4236 5.1934 36 1 0.3390 4.6006 6.3250 37 1 2.5834 8.6723 3.2328 38 1 3.3645 6.0476 3.6225 39 1 4.6276 3.4589 -1.7581 40 1 3.0533 3.9400 -1.0811 41 1 4.5589 4.5475 -0.3516 42 1 7.0714 2.5351 1.6504 43 1 3.4298 1.3983 -1.6638 44 1 3.9550 0.3486 -0.3068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600871079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:47 Heat of formation + Delta-G solvation = -123.618916 kcal Electronic energy + Delta-G solvation = -29842.566436 eV Core-core repulsion = 25725.770910 eV Total energy + Delta-G solvation = -4116.795525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09102 -39.31418 -38.30248 -37.12467 -36.33225 -35.77323 -33.87116 -32.24601 -30.59366 -29.77043 -29.45830 -26.68193 -26.35651 -25.32391 -24.60736 -22.74956 -21.90987 -20.95539 -20.08766 -19.05069 -17.87156 -17.71141 -17.04311 -16.54764 -15.76783 -15.74658 -15.45022 -15.19473 -14.94964 -14.63613 -14.46662 -14.25601 -13.85239 -13.36142 -13.20369 -13.16608 -12.86575 -12.68356 -12.47091 -12.37280 -12.12047 -11.91970 -11.77145 -11.56978 -11.45010 -11.27708 -11.20293 -11.10281 -10.96020 -10.62637 -10.52659 -10.42604 -10.02962 -9.89671 -9.53443 -9.24663 -8.97192 -8.50049 -7.66435 -7.53946 -6.84531 -4.45257 2.13489 2.25598 2.76734 2.91321 3.05559 3.10028 3.11717 3.17583 3.67418 3.79566 3.88943 4.25442 4.37751 4.57425 4.71909 4.91098 5.03257 5.20205 5.24643 5.28674 5.44698 5.48398 5.55080 5.56101 5.60420 5.67978 5.73227 5.78750 5.82079 6.05338 6.17096 6.26944 6.42520 6.62172 6.69685 6.94868 6.96979 6.99625 7.17297 7.34458 7.61914 7.73796 7.84765 7.96504 8.05022 8.13487 8.46652 8.76580 8.79059 8.85216 10.10348 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003960 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.006011 B = 7069.585130 C = 8281.427964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.072 3.928 4 H 0.085 0.915 5 C 0.072 3.928 6 N -0.610 5.610 7 C 0.584 3.416 8 O -0.509 6.509 9 C -0.121 4.121 10 C -0.240 4.240 11 C -0.098 4.098 12 C -0.211 4.211 13 C 0.100 3.900 14 C -0.459 4.459 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.788 5.788 18 Si 0.909 3.091 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.274 1.274 22 C -0.093 4.093 23 C 0.179 3.821 24 C -0.157 4.157 25 C 0.482 3.518 26 O -0.526 6.526 27 O -0.475 6.475 28 C -0.107 4.107 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.283 0.717 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.398 0.602 43 H 0.097 0.903 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -9.852 -8.479 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.051 4.051 6 N -0.349 5.349 7 C 0.377 3.623 8 O -0.384 6.384 9 C -0.124 4.124 10 C -0.260 4.260 11 C -0.117 4.117 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.199 1.199 22 C -0.113 4.113 23 C 0.092 3.908 24 C -0.215 4.215 25 C 0.323 3.677 26 O -0.416 6.416 27 O -0.282 6.282 28 C -0.145 4.145 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.115 0.885 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.982 -9.486 -8.940 13.072 hybrid contribution 0.534 0.691 0.492 1.002 sum -0.448 -8.795 -8.448 12.204 Atomic orbital electron populations 1.22859 0.80513 1.02944 1.00576 1.87903 1.20131 1.26232 1.94835 1.23388 0.94272 0.85320 0.95735 0.89749 1.23343 0.92405 0.92483 0.96844 1.48393 1.31367 1.31622 1.23511 1.18638 0.84796 0.77571 0.81314 1.90721 1.27988 1.45647 1.74015 1.19345 0.99373 0.96666 0.96988 1.21156 1.03475 0.98745 1.02578 1.20465 0.98596 0.96354 0.96250 1.21126 1.03022 0.95019 1.03915 1.17584 0.88979 0.92665 0.91065 1.19625 1.38661 0.91025 0.99497 0.90068 1.25941 0.92663 1.01069 0.94739 1.69783 1.33097 1.30495 1.07845 0.86240 0.79066 0.80400 0.80951 1.18328 1.19542 1.19923 1.21580 0.98585 0.94378 0.96769 1.20681 0.85450 0.97167 0.87507 1.22177 1.04078 0.97128 0.98111 1.23763 0.89751 0.77298 0.76858 1.90683 1.66876 1.32164 1.51842 1.84953 1.32162 1.62034 1.49088 1.22676 0.94004 0.96999 1.00850 0.89451 0.93327 0.93803 0.90338 0.87429 0.87001 0.88956 0.88689 0.90585 0.84975 0.91103 0.90390 0.89594 0.74464 0.88460 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.37 -4.22 10.51 -35.23 -0.37 -4.59 16 3 C 0.07 0.83 3.49 -24.58 -0.09 0.74 16 4 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 5 C 0.07 1.01 4.73 -2.53 -0.01 1.00 16 6 N -0.61 -10.22 2.81 -158.14 -0.44 -10.66 16 7 C 0.58 12.32 6.93 -12.31 -0.09 12.24 16 8 O -0.51 -11.86 13.02 -18.09 -0.24 -12.09 16 9 C -0.12 -2.76 5.80 -105.04 -0.61 -3.37 16 10 C -0.24 -4.88 8.06 -38.92 -0.31 -5.20 16 11 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 12 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 13 C 0.10 2.57 5.57 -106.87 -0.60 1.97 16 14 C -0.46 -11.81 9.06 -37.73 -0.34 -12.16 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 16 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 17 N -0.79 -20.18 10.93 55.55 0.61 -19.57 16 18 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.09 -2.40 8.23 -38.44 -0.32 -2.72 16 23 C 0.18 2.63 0.80 -131.99 -0.11 2.52 16 24 C -0.16 -2.12 8.36 37.16 0.31 -1.81 16 25 C 0.48 7.73 7.12 36.01 0.26 7.98 16 26 O -0.53 -8.87 16.69 -18.75 -0.31 -9.18 16 27 O -0.47 -7.74 10.14 -47.01 -0.48 -8.22 16 28 C -0.11 -1.29 5.41 -24.90 -0.13 -1.43 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 32 H 0.08 1.10 7.49 -51.93 -0.39 0.71 16 33 H 0.11 1.56 5.70 -51.93 -0.30 1.26 16 34 H 0.11 1.93 3.91 -52.48 -0.21 1.72 16 35 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.13 3.69 5.87 -52.49 -0.31 3.39 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.40 6.88 -51.93 -0.36 1.04 16 42 H 0.40 4.57 9.10 45.56 0.41 4.98 16 43 H 0.10 0.96 7.83 -51.93 -0.41 0.56 16 44 H 0.10 1.28 7.37 -51.93 -0.38 0.90 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -31.04 359.44 -7.49 -38.54 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.85 Total: 11.78 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.80 Total: -4.82 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.16 Total: -30.23 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.40 Total: -34.08 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.04 -7.49 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600871079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.084 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds