Wall clock time and date at job start Tue Mar 31 2020 17:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99460 * 2 1 4 4 H 1.08996 * 110.92277 * 327.55046 * 3 2 1 5 5 C 1.54909 * 111.00400 * 91.45852 * 3 2 1 6 6 N 1.47428 * 104.83421 * 155.07701 * 5 3 2 7 7 C 1.34774 * 125.64738 * 155.90600 * 6 5 3 8 8 O 1.21548 * 119.99714 * 175.82634 * 7 6 5 9 9 C 1.47882 * 120.00127 * 355.82584 * 7 6 5 10 10 C 1.39915 * 120.02629 * 20.64071 * 9 7 6 11 11 C 1.38338 * 120.36038 * 179.97438 * 10 9 7 12 12 C 1.37750 * 120.40937 * 0.02562 * 11 10 9 13 13 C 1.40751 * 120.04039 * 359.97438 * 12 11 10 14 14 C 1.41439 * 120.17396 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00175 * 24.50752 * 14 13 12 16 16 C 1.39943 * 119.99591 * 204.50491 * 14 13 12 17 17 N 1.30821 * 119.99882 * 17.12828 * 16 14 13 18 18 Si 1.86804 * 119.99726 * 197.12657 * 16 14 13 19 19 H 1.48502 * 109.46916 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46880 * 120.00136 * 18 16 14 21 21 H 1.48498 * 109.46775 * 239.99981 * 18 16 14 22 22 C 1.39000 * 120.02596 * 200.37248 * 9 7 6 23 23 C 1.47025 * 108.69976 * 335.87202 * 6 5 3 24 24 C 1.53006 * 109.87918 * 120.63238 * 23 6 5 25 25 C 1.50699 * 109.88032 * 241.63643 * 23 6 5 26 26 O 1.20825 * 119.99646 * 143.55310 * 25 23 6 27 27 O 1.34231 * 120.00062 * 323.82508 * 25 23 6 28 28 C 1.54316 * 107.27454 * 1.05798 * 23 6 5 29 29 H 1.09000 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47253 * 299.99930 * 1 2 3 31 31 H 1.08995 * 109.47650 * 59.99723 * 1 2 3 32 32 H 1.09005 * 110.36688 * 36.24095 * 5 3 2 33 33 H 1.08998 * 110.36997 * 273.91730 * 5 3 2 34 34 H 1.08005 * 119.82069 * 0.02562 * 10 9 7 35 35 H 1.08001 * 119.79220 * 180.02562 * 11 10 9 36 36 H 1.08000 * 119.97802 * 179.97438 * 12 11 10 37 37 H 0.97007 * 119.99567 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.19966 * 359.97438 * 22 9 7 39 39 H 1.09002 * 109.46880 * 181.71449 * 24 23 6 40 40 H 1.08999 * 109.46919 * 301.71239 * 24 23 6 41 41 H 1.08995 * 109.47188 * 61.71490 * 24 23 6 42 42 H 0.96696 * 116.99710 * 179.72563 * 27 25 23 43 43 H 1.08999 * 110.72178 * 140.55693 * 28 23 6 44 44 H 1.08999 * 110.71831 * 263.82893 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0105 -0.5463 5 6 2.2695 1.7978 1.4457 6 7 3.3611 2.7807 1.3196 7 6 3.6194 3.7827 2.1830 8 8 4.5944 4.4898 2.0193 9 6 2.7167 4.0219 3.3297 10 6 1.8720 3.0017 3.7805 11 6 1.0251 3.2177 4.8528 12 6 1.0032 4.4394 5.4888 13 6 1.8457 5.4778 5.0495 14 6 1.8259 6.7331 5.7008 15 1 1.4988 6.8036 6.7276 16 6 2.2301 7.8838 5.0146 17 7 2.3036 7.8746 3.7085 18 14 2.6647 9.4330 5.9637 19 1 2.5015 9.1842 7.4186 20 1 4.0736 9.8078 5.6810 21 1 1.7651 10.5381 5.5459 22 6 2.7107 5.2587 3.9640 23 6 4.1215 2.4862 0.0962 24 6 4.0879 3.6951 -0.8410 25 6 5.5479 2.1502 0.4479 26 8 6.1410 1.3037 -0.1778 27 8 6.1576 2.7875 1.4598 28 6 3.4485 1.2739 -0.5811 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.5788 0.9668 2.0797 33 1 1.3761 2.2730 1.8507 34 1 1.8817 2.0399 3.2891 35 1 0.3772 2.4236 5.1934 36 1 0.3390 4.6006 6.3250 37 1 2.5834 8.6723 3.2328 38 1 3.3645 6.0476 3.6225 39 1 4.6276 3.4589 -1.7581 40 1 3.0533 3.9400 -1.0811 41 1 4.5589 4.5475 -0.3516 42 1 7.0714 2.5351 1.6504 43 1 3.4298 1.3983 -1.6638 44 1 3.9550 0.3486 -0.3068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600871079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:46 Heat of formation + Delta-G solvation = -143.108868 kcal Electronic energy + Delta-G solvation = -29843.411583 eV Core-core repulsion = 25725.770910 eV Total energy + Delta-G solvation = -4117.640673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.34868 -40.69138 -39.53855 -38.71450 -37.53723 -37.08095 -35.65453 -33.64426 -31.67189 -31.46739 -31.19728 -27.66181 -27.35972 -27.00209 -25.87977 -24.21909 -23.18132 -22.58448 -21.50043 -20.41464 -19.49501 -19.01957 -18.17512 -17.85396 -17.36823 -17.03552 -16.76961 -16.65091 -16.13315 -15.87032 -15.76154 -15.57084 -15.15409 -14.90115 -14.61931 -14.45518 -14.28609 -14.11513 -13.84494 -13.62115 -13.40391 -13.21390 -13.00458 -12.90708 -12.78778 -12.61848 -12.55213 -12.44788 -12.33172 -12.06341 -11.85151 -11.80151 -11.66944 -11.41567 -11.07277 -10.81759 -10.41829 -9.88304 -9.45564 -9.34570 -8.66315 -6.37033 0.43020 0.94067 1.01313 1.37221 1.46984 1.52474 1.70184 1.93883 2.16141 2.19919 2.73903 2.79030 3.23221 3.35669 3.63163 3.71389 3.92783 4.00768 4.05765 4.18164 4.44479 4.46311 4.53271 4.58183 4.58787 4.62824 4.65418 4.71549 4.79831 4.85213 4.88532 4.98301 5.03462 5.10602 5.19741 5.23422 5.34000 5.46567 5.53983 5.85205 5.96485 6.06357 6.18500 6.29125 6.37491 6.62436 6.88993 6.89525 6.95403 7.24790 8.30689 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003960 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.006011 B = 7069.585130 C = 8281.427964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.384 6.384 3 C 0.086 3.914 4 H 0.104 0.896 5 C 0.063 3.937 6 N -0.604 5.604 7 C 0.581 3.419 8 O -0.542 6.542 9 C -0.130 4.130 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.218 4.218 13 C 0.069 3.931 14 C -0.497 4.497 15 H 0.081 0.919 16 C 0.033 3.967 17 N -0.825 5.825 18 Si 0.979 3.021 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.263 1.263 22 C -0.128 4.128 23 C 0.173 3.827 24 C -0.154 4.154 25 C 0.480 3.520 26 O -0.536 6.536 27 O -0.493 6.493 28 C -0.099 4.099 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.286 0.714 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.414 0.586 43 H 0.125 0.875 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -11.973 -9.453 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.302 6.302 3 C 0.027 3.973 4 H 0.122 0.878 5 C -0.060 4.060 6 N -0.341 5.341 7 C 0.373 3.627 8 O -0.419 6.419 9 C -0.133 4.133 10 C -0.239 4.239 11 C -0.113 4.113 12 C -0.237 4.237 13 C 0.067 3.933 14 C -0.527 4.527 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.450 5.450 18 Si 0.800 3.200 19 H -0.177 1.177 20 H -0.196 1.196 21 H -0.188 1.188 22 C -0.149 4.149 23 C 0.086 3.914 24 C -0.211 4.211 25 C 0.322 3.678 26 O -0.427 6.427 27 O -0.303 6.303 28 C -0.137 4.137 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.274 0.726 43 H 0.144 0.856 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.416 -11.660 -9.925 15.501 hybrid contribution 0.947 1.113 0.739 1.638 sum -1.469 -10.546 -9.186 14.063 Atomic orbital electron populations 1.23088 0.78918 1.04302 1.01353 1.87903 1.21849 1.25703 1.94731 1.23241 0.94375 0.86057 0.93611 0.87792 1.23520 0.91230 0.91797 0.99403 1.48219 1.31988 1.30550 1.23310 1.18390 0.84236 0.78428 0.81678 1.90699 1.29232 1.47210 1.74793 1.19651 0.99917 0.96289 0.97459 1.21649 1.01284 0.99339 1.01676 1.20928 0.98584 0.96406 0.95404 1.21412 1.02562 0.95465 1.04306 1.17914 0.89908 0.93773 0.91714 1.19875 1.40914 0.92047 0.99823 0.90054 1.26765 0.92008 1.03979 0.95417 1.69867 1.34377 1.31466 1.09328 0.85200 0.78606 0.76551 0.79650 1.17690 1.19627 1.18763 1.21365 0.99674 0.95193 0.98620 1.21046 0.84700 0.98868 0.86781 1.22168 1.05113 0.95350 0.98495 1.24029 0.90295 0.76923 0.76545 1.90672 1.67323 1.32542 1.52128 1.84943 1.33646 1.62401 1.49347 1.22702 0.93792 0.94982 1.02214 0.87934 0.93188 0.92395 0.89866 0.87653 0.83288 0.84578 0.87558 0.90321 0.88306 0.88520 0.88837 0.92997 0.72609 0.85636 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.89 113.37 1.23 1.48 16 2 O -0.38 -7.20 10.51 -148.98 -1.57 -8.76 16 3 C 0.09 1.67 3.49 31.99 0.11 1.78 16 4 H 0.10 1.66 7.90 -2.39 -0.02 1.64 16 5 C 0.06 1.58 4.73 86.85 0.41 1.99 16 6 N -0.60 -19.52 2.81 -772.52 -2.17 -21.68 16 7 C 0.58 24.86 6.93 86.80 0.60 25.46 16 8 O -0.54 -26.36 13.02 18.52 0.24 -26.12 16 9 C -0.13 -6.02 5.80 -20.13 -0.12 -6.14 16 10 C -0.22 -8.55 8.06 22.70 0.18 -8.37 16 11 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 12 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 13 C 0.07 3.69 5.57 -21.32 -0.12 3.58 16 14 C -0.50 -26.75 9.06 23.47 0.21 -26.53 16 15 H 0.08 4.17 7.90 -2.91 -0.02 4.14 16 16 C 0.03 1.70 5.15 85.26 0.44 2.14 16 17 N -0.82 -44.62 10.93 21.83 0.24 -44.38 16 18 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 19 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.13 -6.94 8.23 23.01 0.19 -6.75 16 23 C 0.17 4.79 0.80 3.21 0.00 4.79 16 24 C -0.15 -3.95 8.36 71.98 0.60 -3.35 16 25 C 0.48 15.02 7.12 71.24 0.51 15.52 16 26 O -0.54 -17.41 16.69 21.97 0.37 -17.04 16 27 O -0.49 -16.28 10.14 -44.01 -0.45 -16.73 16 28 C -0.10 -2.07 5.41 31.78 0.17 -1.90 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 32 H 0.08 2.06 7.49 -2.38 -0.02 2.04 16 33 H 0.11 2.72 5.70 -2.39 -0.01 2.71 16 34 H 0.15 4.64 3.91 -2.91 -0.01 4.62 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.29 14.19 8.30 -92.70 -0.77 13.42 16 38 H 0.10 5.96 5.87 -2.91 -0.02 5.95 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.72 6.88 -2.39 -0.02 1.70 16 42 H 0.41 9.68 9.10 -74.06 -0.67 9.01 16 43 H 0.13 1.95 7.83 -2.39 -0.02 1.93 16 44 H 0.09 2.09 7.37 -2.39 -0.02 2.07 16 Total: -1.00 -71.36 359.44 3.95 -67.41 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.38 Total: 35.72 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.88 Total: -9.55 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -1.93 Total: -66.07 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -1.40 Total: -68.65 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -71.36 3.95 -67.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600871079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.697 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds