Wall clock time and date at job start Tue Mar 31 2020 18:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50693 * 120.00390 * 2 1 4 4 C 1.31000 * 119.99875 * 179.97438 * 2 1 3 5 5 C 1.50705 * 120.00282 * 174.91374 * 4 2 1 6 6 O 1.42902 * 109.47101 * 135.88199 * 5 4 2 7 7 C 1.35906 * 116.99861 * 179.97438 * 6 5 4 8 8 C 1.38869 * 119.98020 * 359.73429 * 7 6 5 9 9 C 1.38264 * 120.25029 * 179.71870 * 8 7 6 10 10 C 1.37989 * 120.20978 * 0.55012 * 9 8 7 11 11 C 1.39632 * 119.96183 * 359.72294 * 10 9 8 12 12 C 1.47736 * 120.12698 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00290 * 223.37619 * 12 11 10 14 14 N 1.34773 * 119.99861 * 43.37632 * 12 11 10 15 15 C 1.36869 * 120.00280 * 181.64156 * 14 12 11 16 16 H 1.08007 * 120.00029 * 350.82475 * 15 14 12 17 17 C 1.39044 * 120.00397 * 170.82309 * 15 14 12 18 18 N 1.31362 * 119.99961 * 0.59728 * 17 15 14 19 19 Si 1.86799 * 120.00213 * 180.59510 * 17 15 14 20 20 H 1.48505 * 109.47091 * 90.00684 * 19 17 15 21 21 H 1.48503 * 109.47276 * 210.00123 * 19 17 15 22 22 H 1.48491 * 109.47289 * 330.00214 * 19 17 15 23 23 C 1.46501 * 120.00051 * 1.64258 * 14 12 11 24 24 C 1.50703 * 109.47121 * 262.33578 * 23 14 12 25 25 O 1.20828 * 119.99799 * 359.97438 * 24 23 14 26 26 O 1.34226 * 120.00194 * 179.97438 * 24 23 14 27 27 C 1.38429 * 119.98126 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.47145 * 270.00116 * 1 2 3 29 29 H 1.09000 * 109.46517 * 30.00104 * 1 2 3 30 30 H 1.08996 * 109.47071 * 149.99621 * 1 2 3 31 31 H 1.09001 * 109.47482 * 244.56112 * 3 2 1 32 32 H 1.09004 * 109.47075 * 4.56039 * 3 2 1 33 33 H 1.09007 * 109.47459 * 124.56015 * 3 2 1 34 34 H 1.08007 * 120.00053 * 354.64394 * 4 2 1 35 35 H 1.08997 * 109.46828 * 255.88769 * 5 4 2 36 36 H 1.09001 * 109.46448 * 15.88406 * 5 4 2 37 37 H 1.07992 * 119.87594 * 0.02562 * 8 7 6 38 38 H 1.07993 * 119.89907 * 180.27891 * 9 8 7 39 39 H 1.08000 * 120.01542 * 179.74764 * 10 9 8 40 40 H 0.97003 * 120.00541 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47319 * 22.33295 * 23 14 12 42 42 H 1.08993 * 109.47715 * 142.33473 * 23 14 12 43 43 H 0.96693 * 117.00221 * 179.97438 * 26 24 23 44 44 H 1.07996 * 120.10823 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 3.6646 -1.1372 -0.1152 6 8 4.2131 -2.0624 0.8257 7 6 5.5662 -2.1873 0.8511 8 6 6.3487 -1.4376 -0.0172 9 6 7.7261 -1.5560 0.0078 10 6 8.3320 -2.4287 0.8883 11 6 7.5534 -3.1911 1.7614 12 6 8.1984 -4.1261 2.7060 13 8 7.7374 -5.2393 2.8697 14 7 9.2977 -3.7453 3.3863 15 6 9.9149 -4.6229 4.2361 16 1 9.4431 -5.5643 4.4763 17 6 11.1492 -4.3025 4.7903 18 7 11.7176 -3.1525 4.5074 19 14 11.9993 -5.5074 5.9370 20 1 12.8689 -6.4145 5.1457 21 1 12.8267 -4.7586 6.9168 22 1 10.9781 -6.3069 6.6603 23 6 9.8321 -2.3919 3.2162 24 6 10.9655 -2.4204 2.2233 25 8 11.2935 -3.4643 1.7108 26 8 11.6106 -1.2863 1.9083 27 6 6.1632 -3.0664 1.7383 28 1 -0.3633 0.0000 1.0276 29 1 -0.3632 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 2.8246 1.3989 -0.9280 32 1 1.5551 2.1319 0.0817 33 1 2.9472 1.3282 0.8463 34 1 1.6255 -2.0678 0.0882 35 1 3.9507 -1.4328 -1.1246 36 1 4.0467 -0.1378 0.0928 37 1 5.8800 -0.7558 -0.7113 38 1 8.3294 -0.9669 -0.6669 39 1 9.4079 -2.5217 0.9023 40 1 12.5786 -2.9288 4.8943 41 1 9.0445 -1.7336 2.8495 42 1 10.1976 -2.0224 4.1742 43 1 12.3310 -1.3546 1.2669 44 1 5.5555 -3.6531 2.4111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736343293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:35 Heat of formation + Delta-G solvation = -98.746196 kcal Electronic energy + Delta-G solvation = -28535.261238 eV Core-core repulsion = 24419.544275 eV Total energy + Delta-G solvation = -4115.716963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28189 -39.48032 -38.32827 -37.21841 -36.20023 -35.31111 -34.50427 -31.94005 -30.93022 -30.26090 -28.99095 -28.08388 -27.66315 -25.45818 -24.56971 -22.62359 -22.06579 -21.07765 -19.61988 -18.39645 -17.69767 -17.19494 -16.94171 -16.31376 -16.26582 -15.96764 -15.63121 -15.31191 -14.78340 -14.51200 -14.33002 -14.27512 -14.18084 -14.04430 -13.60260 -13.18920 -12.95347 -12.80304 -12.63730 -12.38584 -12.21904 -11.99895 -11.92957 -11.85353 -11.42464 -11.34573 -11.26251 -11.03530 -10.77467 -10.70019 -10.45582 -10.37314 -10.34997 -9.67466 -9.14856 -9.11729 -8.82268 -8.52746 -8.10975 -7.97103 -6.44961 -3.99644 1.34051 1.67736 1.71471 3.09882 3.21062 3.24889 3.30939 3.41466 3.63815 3.96290 4.10622 4.27418 4.49074 4.57953 4.71184 4.90479 4.93800 4.99844 5.05770 5.11721 5.16505 5.18947 5.31176 5.40544 5.46549 5.50387 5.58616 5.61702 5.64858 5.74629 5.82470 5.97525 6.22024 6.29180 6.44936 6.49416 6.51389 6.61948 6.80648 6.84935 6.91530 7.43121 7.51517 7.55692 7.84844 8.27736 8.97087 9.04479 9.19613 9.71487 10.52883 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.002706 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.750634 B =10343.717638 C =11068.598449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.165 4.165 5 C 0.088 3.912 6 O -0.311 6.311 7 C 0.121 3.879 8 C -0.205 4.205 9 C -0.085 4.085 10 C -0.139 4.139 11 C -0.056 4.056 12 C 0.487 3.513 13 O -0.571 6.571 14 N -0.420 5.420 15 C -0.278 4.278 16 H 0.113 0.887 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.134 3.866 24 C 0.499 3.501 25 O -0.520 6.520 26 O -0.531 6.531 27 C -0.109 4.109 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.273 0.727 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.390 0.610 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 12.577 -8.808 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 C -0.183 4.183 4 C -0.184 4.184 5 C 0.013 3.987 6 O -0.226 6.226 7 C 0.076 3.924 8 C -0.225 4.225 9 C -0.103 4.103 10 C -0.157 4.157 11 C -0.059 4.059 12 C 0.276 3.724 13 O -0.456 6.456 14 N -0.138 5.138 15 C -0.405 4.405 16 H 0.130 0.870 17 C -0.173 4.173 18 N -0.543 5.543 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.192 1.192 23 C 0.008 3.992 24 C 0.341 3.659 25 O -0.407 6.407 26 O -0.342 6.342 27 C -0.129 4.129 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.246 0.754 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.102 11.722 -8.351 19.463 hybrid contribution 1.363 -0.355 -0.233 1.428 sum -11.738 11.368 -8.584 18.458 Atomic orbital electron populations 1.20858 0.91572 1.02561 1.02395 1.21633 0.96101 0.94806 0.99116 1.20948 1.00185 0.94818 1.02359 1.22357 0.93729 0.98489 1.03776 1.21802 0.91661 0.92736 0.92468 1.86100 1.18137 1.60577 1.57743 1.18778 0.81972 0.95990 0.95666 1.21206 0.94778 1.03966 1.02509 1.20799 0.93749 0.97835 0.97891 1.21562 1.00517 0.96889 0.96778 1.20027 0.92930 0.95892 0.97101 1.17826 0.83923 0.87259 0.83405 1.90640 1.66055 1.21312 1.67554 1.43361 1.22737 1.10987 1.36678 1.19926 1.00938 1.00691 1.18968 0.86965 1.25299 0.96088 0.97324 0.98619 1.69561 1.18136 1.21582 1.45034 0.85618 0.79068 0.79408 0.78818 1.20239 1.20726 1.19224 1.21345 0.91177 0.85602 1.01082 1.23611 0.83195 0.80402 0.78650 1.90630 1.65830 1.32053 1.52230 1.84544 1.48753 1.39259 1.61614 1.20398 0.93338 0.99176 0.99954 0.91138 0.91666 0.91640 0.91375 0.91708 0.90989 0.86193 0.91209 0.91261 0.85776 0.85664 0.85542 0.91549 0.90639 0.83066 0.75446 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.96 36.01 0.36 -0.38 16 2 C -0.12 -0.94 6.05 -101.07 -0.61 -1.55 16 3 C -0.13 -0.86 8.57 36.00 0.31 -0.56 16 4 C -0.17 -1.59 9.47 -36.02 -0.34 -1.93 16 5 C 0.09 0.94 4.92 36.01 0.18 1.12 16 6 O -0.31 -4.56 10.12 -19.44 -0.20 -4.76 16 7 C 0.12 1.94 6.68 -39.28 -0.26 1.68 16 8 C -0.21 -2.87 9.03 -39.34 -0.36 -3.23 16 9 C -0.08 -1.26 10.03 -39.66 -0.40 -1.66 16 10 C -0.14 -2.60 7.56 -39.15 -0.30 -2.90 16 11 C -0.06 -1.18 4.97 -104.99 -0.52 -1.70 16 12 C 0.49 12.46 7.24 -12.38 -0.09 12.37 16 13 O -0.57 -16.37 16.56 5.29 0.09 -16.28 16 14 N -0.42 -10.87 2.19 -117.21 -0.26 -11.12 16 15 C -0.28 -7.67 9.29 -15.00 -0.14 -7.81 16 16 H 0.11 3.22 7.19 -52.48 -0.38 2.84 16 17 C 0.03 0.67 5.30 -17.45 -0.09 0.58 16 18 N -0.90 -22.81 7.93 55.50 0.44 -22.37 16 19 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.13 3.02 4.80 -5.19 -0.02 3.00 16 24 C 0.50 11.19 3.72 36.01 0.13 11.32 16 25 O -0.52 -13.54 16.28 -18.75 -0.31 -13.84 16 26 O -0.53 -9.63 13.42 -39.25 -0.53 -10.16 16 27 C -0.11 -2.07 9.61 -39.00 -0.37 -2.44 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 32 H 0.06 0.36 7.97 -51.93 -0.41 -0.05 16 33 H 0.07 0.53 7.46 -51.93 -0.39 0.14 16 34 H 0.12 1.15 8.05 -52.48 -0.42 0.73 16 35 H 0.07 0.67 7.64 -51.93 -0.40 0.28 16 36 H 0.07 0.65 5.46 -51.93 -0.28 0.37 16 37 H 0.12 1.32 6.28 -52.49 -0.33 0.99 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.13 2.55 4.01 -52.49 -0.21 2.34 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.08 1.50 5.54 -51.93 -0.29 1.22 16 42 H 0.15 3.56 6.02 -51.93 -0.31 3.25 16 43 H 0.39 5.38 9.10 45.56 0.41 5.79 16 44 H 0.14 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -33.35 366.05 -7.46 -40.81 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -4.67 Total: 10.47 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.53 Total: 5.91 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.18 Total: -33.49 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.94 Total: -45.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.35 -7.46 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736343293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.938 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds