Wall clock time and date at job start Tue Mar 31 2020 17:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47130 * 2 1 4 4 C 1.34778 * 120.00213 * 59.99999 * 3 2 1 5 5 O 1.21282 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00401 * 180.02562 * 4 3 2 7 7 C 1.50692 * 109.47300 * 180.02562 * 6 4 3 8 8 C 1.38304 * 119.93094 * 269.72360 * 7 6 4 9 9 C 1.38096 * 120.07297 * 179.72104 * 8 7 6 10 10 C 1.38879 * 119.92691 * 0.57609 * 9 8 7 11 11 O 1.35756 * 120.06780 * 179.67705 * 10 9 8 12 12 C 1.34837 * 116.99805 * 174.48852 * 11 10 9 13 13 H 1.08001 * 119.99832 * 5.05645 * 12 11 10 14 14 C 1.38654 * 119.99756 * 185.05976 * 12 11 10 15 15 N 1.31553 * 119.99710 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99999 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47104 * 90.00319 * 16 14 12 18 18 H 1.48493 * 109.46735 * 210.00179 * 16 14 12 19 19 H 1.48503 * 109.46974 * 330.00034 * 16 14 12 20 20 C 1.38879 * 119.86342 * 359.70183 * 10 9 8 21 21 C 1.38100 * 119.92855 * 359.97438 * 20 10 9 22 22 C 1.50694 * 109.47542 * 119.99942 * 2 1 3 23 23 O 1.20836 * 119.99615 * 24.99989 * 22 2 1 24 24 O 1.34222 * 120.00727 * 204.99937 * 22 2 1 25 25 C 1.52999 * 109.47041 * 240.00179 * 2 1 3 26 26 C 1.52994 * 117.49984 * 304.99808 * 25 2 1 27 27 C 1.52992 * 60.00281 * 252.51107 * 26 25 2 28 28 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46914 * 300.00084 * 1 2 3 30 30 H 1.09006 * 109.47117 * 59.99747 * 1 2 3 31 31 H 0.97008 * 119.99993 * 240.00231 * 3 2 1 32 32 H 1.09010 * 109.46734 * 300.00453 * 6 4 3 33 33 H 1.09001 * 109.46930 * 59.99747 * 6 4 3 34 34 H 1.08002 * 119.96415 * 359.97438 * 8 7 6 35 35 H 1.07999 * 120.03781 * 180.27036 * 9 8 7 36 36 H 0.97004 * 120.00058 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.03630 * 179.97438 * 20 10 9 38 38 H 1.08011 * 119.96497 * 180.02562 * 21 20 10 39 39 H 0.96697 * 117.00482 * 179.97438 * 24 22 2 40 40 H 1.09003 * 115.56558 * 90.68922 * 25 2 1 41 41 H 1.09000 * 117.50082 * 145.02020 * 26 25 2 42 42 H 1.09001 * 117.49792 * 0.02562 * 26 25 2 43 43 H 1.09004 * 117.50415 * 107.48772 * 27 26 25 44 44 H 1.09003 * 117.50315 * 252.50973 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.6927 2.2111 1.0108 5 8 0.9958 1.8143 1.9207 6 6 2.1945 3.6321 1.0106 7 6 1.6929 4.3422 2.2413 8 6 0.4867 5.0180 2.2047 9 6 0.0214 5.6649 3.3325 10 6 0.7718 5.6466 4.5010 11 8 0.3202 6.2871 5.6095 12 6 1.0391 6.1349 6.7400 13 1 1.9731 5.5930 6.7171 14 6 0.5793 6.6740 7.9318 15 7 1.2805 6.5250 9.0349 16 14 -1.0358 7.6117 7.9711 17 1 -2.1481 6.6700 8.2559 18 1 -0.9806 8.6481 9.0331 19 1 -1.2625 8.2623 6.6556 20 6 1.9853 4.9720 4.5330 21 6 2.4419 4.3214 3.4037 22 6 2.0324 -0.7103 1.2304 23 8 1.3396 -1.5362 1.7764 24 8 3.2493 -0.4258 1.7199 25 6 2.0399 -0.7212 -1.2493 26 6 1.5416 -2.1467 -1.4950 27 6 2.9839 -1.9077 -1.0442 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.5760 1.6985 -0.7276 32 1 3.2847 3.6324 1.0102 33 1 1.8308 4.1457 0.1206 34 1 -0.0939 5.0363 1.2942 35 1 -0.9227 6.1887 3.3045 36 1 0.9590 6.9024 9.8687 37 1 2.5713 4.9563 5.4400 38 1 3.3855 3.7962 3.4280 39 1 3.5278 -0.9069 2.5111 40 1 2.2079 -0.0895 -2.1215 41 1 1.3816 -2.4528 -2.5288 42 1 0.8500 -2.5706 -0.7668 43 1 3.2417 -2.1744 -0.0192 44 1 3.7729 -2.0565 -1.7814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736642726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:55 Heat of formation + Delta-G solvation = -95.993560 kcal Electronic energy + Delta-G solvation = -28428.004405 eV Core-core repulsion = 24312.406805 eV Total energy + Delta-G solvation = -4115.597600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.39898 -39.62642 -38.89359 -37.91297 -36.64315 -36.23707 -34.64682 -32.52870 -31.88390 -30.32395 -30.17236 -26.94645 -25.77063 -24.79259 -23.63323 -22.70620 -22.07341 -21.16573 -20.06807 -19.95530 -18.39156 -17.85687 -17.71748 -17.20041 -17.15934 -16.41862 -15.35391 -15.17842 -15.11567 -14.66820 -14.47544 -14.11060 -13.99225 -13.74058 -13.66990 -13.53316 -13.41317 -12.81150 -12.63735 -12.50967 -12.40552 -12.17161 -12.00779 -11.89261 -11.64312 -11.61473 -11.27885 -11.04843 -10.91080 -10.81019 -10.74240 -10.72594 -10.64728 -10.12743 -9.73711 -9.37610 -9.34869 -8.82935 -8.20256 -7.27789 -6.38501 -4.04808 1.96448 2.17199 2.19307 2.52235 2.81547 2.90318 3.24419 3.28458 3.30171 3.42881 3.99072 4.26757 4.27467 4.38833 4.47360 4.63276 4.78827 4.86755 4.90468 5.03997 5.13839 5.15787 5.23815 5.26578 5.33446 5.41170 5.51559 5.55034 5.61049 5.64361 5.68786 5.78090 6.03140 6.14680 6.16665 6.35545 6.36317 6.59723 6.82759 7.04887 7.24920 7.30688 7.34081 7.65092 7.72622 7.83835 8.07335 8.18271 8.96938 9.59647 10.69249 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002444 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.171447 B =11453.426675 C =11756.544125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.225 3.775 3 N -0.725 5.725 4 C 0.514 3.486 5 O -0.512 6.512 6 C -0.078 4.078 7 C -0.163 4.163 8 C -0.061 4.061 9 C -0.191 4.191 10 C 0.162 3.838 11 O -0.218 6.218 12 C -0.388 4.388 13 H 0.106 0.894 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.220 4.220 21 C -0.057 4.057 22 C 0.487 3.513 23 O -0.508 6.508 24 O -0.509 6.509 25 C -0.161 4.161 26 C -0.165 4.165 27 C -0.176 4.176 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.405 0.595 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.279 0.721 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.408 0.592 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -13.363 -25.005 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 N -0.381 5.381 4 C 0.301 3.699 5 O -0.385 6.385 6 C -0.118 4.118 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.211 4.211 10 C 0.110 3.890 11 O -0.123 6.123 12 C -0.464 4.464 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.239 4.239 21 C -0.075 4.075 22 C 0.327 3.673 23 O -0.395 6.395 24 O -0.320 6.320 25 C -0.180 4.180 26 C -0.202 4.202 27 C -0.213 4.213 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.240 0.760 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.267 0.733 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.545 -13.457 -24.208 27.923 hybrid contribution 0.035 0.092 0.489 0.499 sum 3.580 -13.365 -23.719 27.460 Atomic orbital electron populations 1.22159 0.90462 1.04095 1.04601 1.19607 0.95759 0.82073 0.88928 1.46119 1.55162 1.09895 1.26904 1.21145 0.79813 0.87994 0.80949 1.90760 1.36140 1.76705 1.34894 1.20406 1.01960 0.90617 0.98816 1.18678 0.97889 1.05394 0.94459 1.20397 0.94542 0.96213 0.96799 1.20148 1.01282 1.07627 0.91996 1.19127 0.92026 0.90401 0.87414 1.83572 1.50518 1.61788 1.16408 1.20775 1.05384 1.37030 0.83213 0.87637 1.24468 0.99052 0.96990 0.93530 1.69648 1.38674 1.44224 0.99296 0.86176 0.82451 0.79667 0.78583 1.19888 1.20808 1.18359 1.21222 0.98339 1.04562 0.99742 1.20565 0.98201 0.96732 0.92008 1.23510 0.78737 0.80023 0.84983 1.90720 1.56784 1.33259 1.58695 1.84536 1.34627 1.65965 1.46862 1.22352 1.06127 0.91752 0.97743 1.23114 0.97435 0.96257 1.03436 1.23167 0.94004 1.01002 1.03146 0.90508 0.89376 0.90810 0.75975 0.88597 0.88688 0.87187 0.86560 0.91086 0.84996 0.87538 0.73338 0.85381 0.87619 0.87764 0.88827 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 7.72 37.16 0.29 -1.39 16 2 C 0.22 2.21 0.88 -132.98 -0.12 2.09 16 3 N -0.72 -6.53 4.88 -48.69 -0.24 -6.77 16 4 C 0.51 6.60 7.15 -10.99 -0.08 6.52 16 5 O -0.51 -9.15 13.24 5.56 0.07 -9.07 16 6 C -0.08 -0.89 5.83 -29.04 -0.17 -1.06 16 7 C -0.16 -2.70 4.38 -104.58 -0.46 -3.16 16 8 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 9 C -0.19 -3.92 9.99 -39.40 -0.39 -4.32 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 O -0.22 -5.91 8.59 0.01 0.00 -5.91 16 12 C -0.39 -11.22 9.95 30.89 0.31 -10.91 16 13 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 14 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 15 N -0.88 -25.91 13.96 55.48 0.77 -25.14 16 16 Si 0.91 22.15 28.62 -169.99 -4.86 17.29 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.22 -4.91 9.17 -39.39 -0.36 -5.27 16 21 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 22 C 0.49 6.11 3.55 36.00 0.13 6.24 16 23 O -0.51 -7.86 16.85 -18.76 -0.32 -8.17 16 24 O -0.51 -5.49 12.69 -39.24 -0.50 -5.99 16 25 C -0.16 -1.05 5.34 -90.62 -0.48 -1.53 16 26 C -0.17 -1.04 9.56 -26.74 -0.26 -1.29 16 27 C -0.18 -1.15 9.68 -26.74 -0.26 -1.41 16 28 H 0.08 0.79 6.72 -51.93 -0.35 0.44 16 29 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 2.19 8.40 -40.82 -0.34 1.85 16 32 H 0.10 0.89 8.08 -51.92 -0.42 0.47 16 33 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 38 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.41 3.08 9.10 45.56 0.41 3.50 16 40 H 0.13 0.52 8.04 -51.93 -0.42 0.11 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.81 7.29 -51.93 -0.38 0.44 16 43 H 0.09 0.76 6.19 -51.93 -0.32 0.44 16 44 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -36.34 370.91 -7.26 -43.60 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.81 Total: 7.62 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.98 Total: -13.04 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.54 Total: -31.91 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.74 Total: -29.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.34 -7.26 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736642726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.391 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds