Wall clock time and date at job start Tue Mar 31 2020 17:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38427 * 119.91505 * 2 1 4 4 C 1.38376 * 120.34924 * 180.23056 * 3 2 1 5 5 C 1.37913 * 120.17467 * 359.49415 * 4 3 2 6 6 C 1.50695 * 120.09103 * 180.23474 * 5 4 3 7 7 C 1.39837 * 119.81890 * 0.50220 * 5 4 3 8 8 C 1.47171 * 120.16874 * 179.72774 * 7 5 4 9 9 O 1.21254 * 119.99783 * 353.95501 * 8 7 5 10 10 C 1.50697 * 119.99646 * 173.95515 * 8 7 5 11 11 C 1.53008 * 109.46965 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47445 * 179.97438 * 11 10 8 13 13 O 1.21293 * 119.99703 * 359.97438 * 12 11 10 14 14 N 1.34767 * 120.00221 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00066 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00228 * 14.39306 * 15 14 12 17 17 C 1.38954 * 120.00105 * 194.39505 * 15 14 12 18 18 N 1.31413 * 119.99792 * 22.19858 * 17 15 14 19 19 Si 1.86793 * 120.00011 * 202.19809 * 17 15 14 20 20 H 1.48499 * 109.47331 * 94.97326 * 19 17 15 21 21 H 1.48503 * 109.47218 * 214.97570 * 19 17 15 22 22 H 1.48497 * 109.47167 * 334.97463 * 19 17 15 23 23 C 1.46494 * 120.00163 * 0.02562 * 14 12 11 24 24 C 1.50702 * 109.47496 * 83.80773 * 23 14 12 25 25 O 1.20826 * 119.99803 * 359.97438 * 24 23 14 26 26 O 1.34224 * 120.00362 * 180.02562 * 24 23 14 27 27 C 1.37863 * 119.91467 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47112 * 90.00086 * 1 2 3 29 29 H 1.08997 * 109.47036 * 209.99998 * 1 2 3 30 30 H 1.08994 * 109.47098 * 330.00304 * 1 2 3 31 31 H 1.08004 * 119.82177 * 359.95300 * 3 2 1 32 32 H 1.08000 * 119.91301 * 179.74123 * 4 3 2 33 33 H 1.09009 * 109.46569 * 263.11939 * 6 5 4 34 34 H 1.09000 * 109.47154 * 23.11154 * 6 5 4 35 35 H 1.08999 * 109.47692 * 143.12391 * 6 5 4 36 36 H 1.08999 * 109.47318 * 299.99707 * 10 8 7 37 37 H 1.08994 * 109.47630 * 59.99805 * 10 8 7 38 38 H 1.08999 * 109.46851 * 299.99978 * 11 10 8 39 39 H 1.09000 * 109.46745 * 59.99671 * 11 10 8 40 40 H 0.97004 * 119.99618 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47475 * 203.81135 * 23 14 12 42 42 H 1.09000 * 109.47012 * 323.80602 * 23 14 12 43 43 H 0.96698 * 117.00614 * 179.97438 * 26 24 23 44 44 H 1.08004 * 120.08833 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5811 1.2103 -0.0048 5 6 4.2834 0.0234 0.0009 6 6 5.7902 0.0370 0.0010 7 6 3.5933 -1.1928 0.0009 8 6 4.3349 -2.4640 0.0009 9 8 5.5424 -2.4614 -0.1097 10 6 3.5936 -3.7688 0.1384 11 6 4.5918 -4.9280 0.1096 12 6 3.8507 -6.2328 0.2477 13 8 2.6428 -6.2353 0.3587 14 7 4.5298 -7.3968 0.2478 15 6 3.8554 -8.5840 0.3729 16 1 2.7842 -8.6133 0.2386 17 6 4.5501 -9.7495 0.6725 18 7 5.7266 -9.6820 1.2541 19 14 3.8117 -11.4121 0.2486 20 1 4.3295 -11.8624 -1.0684 21 1 4.1859 -12.4004 1.2918 22 1 2.3327 -11.2952 0.1852 23 6 5.9886 -7.3938 0.1143 24 6 6.6164 -7.1646 1.4650 25 8 5.9168 -7.0184 2.4393 26 8 7.9525 -7.1220 1.5857 27 6 2.1946 -1.1950 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6531 2.1327 -0.0008 32 1 4.1126 2.1505 -0.0090 33 1 6.1547 -0.0876 -1.0188 34 1 6.1450 0.9874 0.3999 35 1 6.1610 -0.7787 0.6215 36 1 3.0509 -3.7806 1.0836 37 1 2.8890 -3.8751 -0.6864 38 1 5.1348 -4.9164 -0.8354 39 1 5.2961 -4.8215 0.9347 40 1 6.2117 -10.4957 1.4629 41 1 6.3193 -8.3539 -0.2819 42 1 6.2895 -6.5971 -0.5661 43 1 8.3087 -6.9722 2.4721 44 1 1.6546 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738573297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:14 Heat of formation + Delta-G solvation = -135.844524 kcal Electronic energy + Delta-G solvation = -28531.316503 eV Core-core repulsion = 24413.990836 eV Total energy + Delta-G solvation = -4117.325667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.40277 -39.45191 -38.52299 -37.98668 -35.29470 -34.55786 -33.92911 -32.69147 -31.81211 -31.10220 -29.37693 -27.71267 -26.36258 -25.14792 -24.29324 -23.23987 -21.21224 -20.92869 -19.40613 -18.68880 -17.19424 -16.99954 -16.72627 -16.01559 -15.86598 -15.74867 -15.63881 -15.31347 -14.68688 -14.46174 -14.26700 -14.18342 -13.91939 -13.79428 -13.64829 -13.16289 -12.98960 -12.71836 -12.47239 -12.32209 -11.96632 -11.86144 -11.80648 -11.68915 -11.62473 -11.55651 -11.41629 -11.15683 -10.93290 -10.76649 -10.42926 -10.35981 -10.27727 -9.66483 -9.33806 -9.10908 -9.04511 -8.65287 -8.53775 -7.94526 -6.46479 -3.89186 0.60712 1.18233 2.42680 3.12850 3.24001 3.29628 3.44954 3.61163 3.63611 3.95461 4.12654 4.24931 4.56154 4.60912 4.77938 4.80338 4.98283 5.02462 5.07531 5.18994 5.34106 5.41437 5.47177 5.49302 5.53581 5.59327 5.69241 5.74930 5.84972 5.86379 5.89326 6.06568 6.09502 6.16573 6.29387 6.34230 6.37433 6.46915 6.48359 6.61063 6.75966 7.49145 7.53896 7.63281 7.96248 8.35011 9.01840 9.07251 9.29913 9.82564 10.62204 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002932 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.026550 B = 9549.077144 C =10847.755470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.032 4.032 6 C -0.122 4.122 7 C -0.165 4.165 8 C 0.394 3.606 9 O -0.449 6.449 10 C -0.143 4.143 11 C -0.125 4.125 12 C 0.460 3.540 13 O -0.580 6.580 14 N -0.431 5.431 15 C -0.305 4.305 16 H 0.109 0.891 17 C 0.028 3.972 18 N -0.882 5.882 19 Si 0.929 3.071 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.269 1.269 23 C 0.142 3.858 24 C 0.490 3.510 25 O -0.507 6.507 26 O -0.533 6.533 27 C -0.066 4.066 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.271 0.729 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.392 0.608 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 18.063 -4.092 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.107 4.107 4 C -0.154 4.154 5 C -0.033 4.033 6 C -0.178 4.178 7 C -0.166 4.166 8 C 0.273 3.727 9 O -0.325 6.325 10 C -0.181 4.181 11 C -0.165 4.165 12 C 0.249 3.751 13 O -0.464 6.464 14 N -0.151 5.151 15 C -0.432 4.432 16 H 0.127 0.873 17 C -0.174 4.174 18 N -0.522 5.522 19 Si 0.756 3.244 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.193 1.193 23 C 0.016 3.984 24 C 0.331 3.669 25 O -0.393 6.393 26 O -0.344 6.344 27 C -0.084 4.084 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.150 0.850 42 H 0.097 0.903 43 H 0.248 0.752 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.054 17.869 -4.149 18.375 hybrid contribution 0.069 -0.818 0.710 1.085 sum -0.985 17.051 -3.439 17.423 Atomic orbital electron populations 1.20793 0.90736 1.03043 1.02493 1.19883 0.96435 0.92916 1.01608 1.21245 0.94159 0.97622 0.97660 1.21015 0.94093 0.97544 1.02712 1.20239 0.96728 0.91923 0.94364 1.21080 0.90287 1.02884 1.03533 1.20436 0.94327 0.94547 1.07296 1.22646 0.88743 0.90117 0.71229 1.90456 1.16288 1.89477 1.36302 1.21701 0.99481 0.91232 1.05653 1.21383 0.98557 0.93006 1.03585 1.19982 0.88090 0.84534 0.82454 1.90510 1.14239 1.86890 1.54731 1.43457 1.03302 1.05793 1.62520 1.19769 0.94532 0.82586 1.46342 0.87291 1.25230 0.96480 1.00168 0.95566 1.69846 1.15208 1.29578 1.37556 0.85855 0.79570 0.80916 0.78066 1.20317 1.21122 1.19304 1.20765 0.82490 1.04855 0.90311 1.23870 0.79041 0.70736 0.93272 1.90612 1.62852 1.45533 1.40260 1.84525 1.25684 1.85720 1.38445 1.21462 0.92850 0.98536 0.95591 0.91093 0.91103 0.91587 0.85826 0.85637 0.90618 0.92420 0.88965 0.87738 0.87717 0.89832 0.89916 0.91883 0.85014 0.90307 0.75157 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.11 -1.08 5.87 -104.69 -0.61 -1.69 16 3 C -0.09 -0.82 9.69 -39.46 -0.38 -1.20 16 4 C -0.14 -1.34 9.66 -39.65 -0.38 -1.73 16 5 C -0.03 -0.39 5.92 -104.15 -0.62 -1.00 16 6 C -0.12 -1.38 8.71 36.00 0.31 -1.06 16 7 C -0.17 -2.16 5.87 -105.06 -0.62 -2.78 16 8 C 0.39 5.85 7.05 -30.68 -0.22 5.64 16 9 O -0.45 -7.37 12.99 5.58 0.07 -7.30 16 10 C -0.14 -2.29 3.69 -27.88 -0.10 -2.40 16 11 C -0.12 -2.37 3.60 -27.88 -0.10 -2.47 16 12 C 0.46 11.05 7.40 -10.99 -0.08 10.97 16 13 O -0.58 -15.42 15.61 5.55 0.09 -15.33 16 14 N -0.43 -10.87 2.18 -116.10 -0.25 -11.12 16 15 C -0.31 -8.36 9.37 -14.93 -0.14 -8.50 16 16 H 0.11 3.12 7.35 -52.49 -0.39 2.74 16 17 C 0.03 0.73 4.89 -17.47 -0.09 0.64 16 18 N -0.88 -23.13 9.36 55.50 0.52 -22.61 16 19 Si 0.93 20.42 29.61 -169.99 -5.03 15.39 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.14 3.14 4.97 -5.20 -0.03 3.11 16 24 C 0.49 11.07 5.92 36.01 0.21 11.28 16 25 O -0.51 -13.34 16.91 -18.75 -0.32 -13.66 16 26 O -0.53 -9.84 13.42 -39.24 -0.53 -10.36 16 27 C -0.07 -0.77 9.12 -39.11 -0.36 -1.12 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.13 0.95 8.05 -52.49 -0.42 0.53 16 33 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 35 H 0.09 1.22 5.90 -51.93 -0.31 0.91 16 36 H 0.10 1.71 8.10 -51.93 -0.42 1.29 16 37 H 0.10 1.58 7.86 -51.93 -0.41 1.17 16 38 H 0.08 1.43 7.37 -51.93 -0.38 1.05 16 39 H 0.08 1.64 7.46 -51.93 -0.39 1.25 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.13 3.01 6.20 -51.93 -0.32 2.69 16 42 H 0.08 1.44 6.70 -51.93 -0.35 1.09 16 43 H 0.39 5.59 9.10 45.56 0.41 6.00 16 44 H 0.14 1.47 6.99 -52.48 -0.37 1.11 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -34.11 371.08 -7.69 -41.80 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.00 Total: 10.41 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.83 Total: 7.19 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.27 Total: -33.74 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.68 Total: -46.65 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.11 -7.69 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738573297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.041 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds