Wall clock time and date at job start Tue Mar 31 2020 17:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38427 * 119.91505 * 2 1 4 4 C 1.38376 * 120.34924 * 180.23056 * 3 2 1 5 5 C 1.37913 * 120.17467 * 359.49415 * 4 3 2 6 6 C 1.50695 * 120.09103 * 180.23474 * 5 4 3 7 7 C 1.39837 * 119.81890 * 0.50220 * 5 4 3 8 8 C 1.47171 * 120.16874 * 179.72774 * 7 5 4 9 9 O 1.21254 * 119.99783 * 353.95501 * 8 7 5 10 10 C 1.50697 * 119.99646 * 173.95515 * 8 7 5 11 11 C 1.53008 * 109.46965 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47445 * 179.97438 * 11 10 8 13 13 O 1.21293 * 119.99703 * 359.97438 * 12 11 10 14 14 N 1.34767 * 120.00221 * 179.97438 * 12 11 10 15 15 C 1.37102 * 120.00066 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00228 * 14.39306 * 15 14 12 17 17 C 1.38954 * 120.00105 * 194.39505 * 15 14 12 18 18 N 1.31413 * 119.99792 * 22.19858 * 17 15 14 19 19 Si 1.86793 * 120.00011 * 202.19809 * 17 15 14 20 20 H 1.48499 * 109.47331 * 94.97326 * 19 17 15 21 21 H 1.48503 * 109.47218 * 214.97570 * 19 17 15 22 22 H 1.48497 * 109.47167 * 334.97463 * 19 17 15 23 23 C 1.46494 * 120.00163 * 0.02562 * 14 12 11 24 24 C 1.50702 * 109.47496 * 83.80773 * 23 14 12 25 25 O 1.20826 * 119.99803 * 359.97438 * 24 23 14 26 26 O 1.34224 * 120.00362 * 180.02562 * 24 23 14 27 27 C 1.37863 * 119.91467 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47112 * 90.00086 * 1 2 3 29 29 H 1.08997 * 109.47036 * 209.99998 * 1 2 3 30 30 H 1.08994 * 109.47098 * 330.00304 * 1 2 3 31 31 H 1.08004 * 119.82177 * 359.95300 * 3 2 1 32 32 H 1.08000 * 119.91301 * 179.74123 * 4 3 2 33 33 H 1.09009 * 109.46569 * 263.11939 * 6 5 4 34 34 H 1.09000 * 109.47154 * 23.11154 * 6 5 4 35 35 H 1.08999 * 109.47692 * 143.12391 * 6 5 4 36 36 H 1.08999 * 109.47318 * 299.99707 * 10 8 7 37 37 H 1.08994 * 109.47630 * 59.99805 * 10 8 7 38 38 H 1.08999 * 109.46851 * 299.99978 * 11 10 8 39 39 H 1.09000 * 109.46745 * 59.99671 * 11 10 8 40 40 H 0.97004 * 119.99618 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47475 * 203.81135 * 23 14 12 42 42 H 1.09000 * 109.47012 * 323.80602 * 23 14 12 43 43 H 0.96698 * 117.00614 * 179.97438 * 26 24 23 44 44 H 1.08004 * 120.08833 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5811 1.2103 -0.0048 5 6 4.2834 0.0234 0.0009 6 6 5.7902 0.0370 0.0010 7 6 3.5933 -1.1928 0.0009 8 6 4.3349 -2.4640 0.0009 9 8 5.5424 -2.4614 -0.1097 10 6 3.5936 -3.7688 0.1384 11 6 4.5918 -4.9280 0.1096 12 6 3.8507 -6.2328 0.2477 13 8 2.6428 -6.2353 0.3587 14 7 4.5298 -7.3968 0.2478 15 6 3.8554 -8.5840 0.3729 16 1 2.7842 -8.6133 0.2386 17 6 4.5501 -9.7495 0.6725 18 7 5.7266 -9.6820 1.2541 19 14 3.8117 -11.4121 0.2486 20 1 4.3295 -11.8624 -1.0684 21 1 4.1859 -12.4004 1.2918 22 1 2.3327 -11.2952 0.1852 23 6 5.9886 -7.3938 0.1143 24 6 6.6164 -7.1646 1.4650 25 8 5.9168 -7.0184 2.4393 26 8 7.9525 -7.1220 1.5857 27 6 2.1946 -1.1950 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6531 2.1327 -0.0008 32 1 4.1126 2.1505 -0.0090 33 1 6.1547 -0.0876 -1.0188 34 1 6.1450 0.9874 0.3999 35 1 6.1610 -0.7787 0.6215 36 1 3.0509 -3.7806 1.0836 37 1 2.8890 -3.8751 -0.6864 38 1 5.1348 -4.9164 -0.8354 39 1 5.2961 -4.8215 0.9347 40 1 6.2117 -10.4957 1.4629 41 1 6.3193 -8.3539 -0.2819 42 1 6.2895 -6.5971 -0.5661 43 1 8.3087 -6.9722 2.4721 44 1 1.6546 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738573297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:13 Heat of formation + Delta-G solvation = -156.138276 kcal Electronic energy + Delta-G solvation = -28532.196507 eV Core-core repulsion = 24413.990836 eV Total energy + Delta-G solvation = -4118.205670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53758 -41.13019 -40.01786 -39.31279 -37.08777 -36.41613 -34.77895 -34.11889 -33.60305 -32.19660 -30.15472 -29.53940 -27.86849 -26.28289 -25.56918 -24.33511 -22.87658 -21.99135 -20.59483 -20.32486 -19.06052 -18.74817 -18.28596 -17.51857 -17.30234 -16.82345 -16.68932 -16.49848 -16.32048 -16.23961 -15.87345 -15.50917 -15.14468 -14.93172 -14.65215 -14.24807 -14.16926 -13.86271 -13.75342 -13.61102 -13.46042 -13.37795 -13.26084 -12.96250 -12.78769 -12.61201 -12.52042 -12.46205 -12.36950 -12.25841 -12.14249 -12.06300 -11.96948 -11.56773 -10.96833 -10.48512 -10.45876 -9.94505 -9.90720 -9.45544 -8.44991 -5.95514 -0.32011 0.38080 1.36064 1.39815 1.43168 1.55729 1.66259 1.83847 2.23926 2.51172 2.74551 2.77948 3.03291 3.19390 3.67393 3.82590 3.88541 3.96998 4.06558 4.06916 4.23626 4.26218 4.29055 4.50976 4.62558 4.66812 4.73370 4.75486 4.79537 4.84913 4.86331 4.88191 4.89964 4.95089 5.04910 5.17358 5.30969 5.36423 5.45376 5.58260 5.61577 5.90827 5.98190 5.98565 6.36335 6.49286 7.08214 7.27364 7.41691 7.89752 8.61840 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002932 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.026550 B = 9549.077144 C =10847.755470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.113 4.113 3 C -0.081 4.081 4 C -0.135 4.135 5 C -0.047 4.047 6 C -0.118 4.118 7 C -0.188 4.188 8 C 0.401 3.599 9 O -0.470 6.470 10 C -0.138 4.138 11 C -0.112 4.112 12 C 0.449 3.551 13 O -0.616 6.616 14 N -0.444 5.444 15 C -0.343 4.343 16 H 0.083 0.917 17 C -0.002 4.002 18 N -0.894 5.894 19 Si 0.994 3.006 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.276 1.276 23 C 0.140 3.860 24 C 0.497 3.503 25 O -0.551 6.551 26 O -0.517 6.517 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.275 0.725 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.414 0.586 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 19.767 -4.800 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.099 4.099 4 C -0.152 4.152 5 C -0.048 4.048 6 C -0.174 4.174 7 C -0.189 4.189 8 C 0.281 3.719 9 O -0.348 6.348 10 C -0.176 4.176 11 C -0.152 4.152 12 C 0.240 3.760 13 O -0.502 6.502 14 N -0.163 5.163 15 C -0.470 4.470 16 H 0.101 0.899 17 C -0.203 4.203 18 N -0.533 5.533 19 Si 0.818 3.182 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.201 1.201 23 C 0.014 3.986 24 C 0.339 3.661 25 O -0.441 6.441 26 O -0.329 6.329 27 C -0.097 4.097 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.273 0.727 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.762 19.581 -4.861 20.190 hybrid contribution 0.024 -1.291 0.974 1.617 sum -0.739 18.291 -3.887 18.714 Atomic orbital electron populations 1.20847 0.89027 1.03806 1.03318 1.20215 0.97771 0.92617 1.00661 1.21663 0.94111 0.98571 0.95578 1.21342 0.94617 0.97729 1.01541 1.20433 0.97089 0.92326 0.94911 1.21018 0.90181 1.03212 1.03009 1.20323 0.94897 0.93939 1.09702 1.22579 0.88410 0.90334 0.70556 1.90450 1.16919 1.89712 1.37692 1.21649 0.99053 0.91218 1.05645 1.21282 0.98569 0.91167 1.04181 1.20816 0.88023 0.85815 0.81336 1.90468 1.15932 1.87643 1.56187 1.43624 1.04645 1.05600 1.62431 1.19705 0.93997 0.84461 1.48848 0.89908 1.25986 0.96883 1.02863 0.94553 1.69925 1.15838 1.30546 1.37011 0.84909 0.78317 0.76548 0.78462 1.18418 1.20766 1.20053 1.20904 0.80902 1.05874 0.90939 1.23876 0.79856 0.69545 0.92779 1.90599 1.64133 1.47756 1.41586 1.84451 1.23416 1.84862 1.40213 1.21572 0.92438 0.99497 0.96191 0.90152 0.91502 0.89728 0.82562 0.82931 0.90891 0.90066 0.91279 0.88569 0.86959 0.87750 0.90677 0.91499 0.85745 0.86518 0.72683 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.11 -2.03 5.87 -19.91 -0.12 -2.14 16 3 C -0.08 -1.24 9.69 22.35 0.22 -1.02 16 4 C -0.13 -2.29 9.66 22.23 0.21 -2.08 16 5 C -0.05 -1.08 5.92 -19.56 -0.12 -1.20 16 6 C -0.12 -2.57 8.71 71.23 0.62 -1.95 16 7 C -0.19 -4.89 5.87 -20.15 -0.12 -5.00 16 8 C 0.40 12.13 7.05 28.03 0.20 12.33 16 9 O -0.47 -15.65 12.99 -2.95 -0.04 -15.68 16 10 C -0.14 -4.56 3.69 29.85 0.11 -4.45 16 11 C -0.11 -4.32 3.60 29.85 0.11 -4.21 16 12 C 0.45 22.28 7.40 87.66 0.65 22.93 16 13 O -0.62 -34.22 15.61 -3.07 -0.05 -34.27 16 14 N -0.44 -22.93 2.18 -639.62 -1.40 -24.33 16 15 C -0.34 -19.37 9.37 84.04 0.79 -18.58 16 16 H 0.08 5.00 7.35 -2.91 -0.02 4.97 16 17 C 0.00 -0.08 4.89 84.93 0.41 0.33 16 18 N -0.89 -46.83 9.36 21.66 0.20 -46.63 16 19 Si 0.99 42.03 29.61 68.60 2.03 44.06 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 C 0.14 6.14 4.97 85.63 0.43 6.56 16 24 C 0.50 22.33 5.92 71.24 0.42 22.75 16 25 O -0.55 -29.46 16.91 21.96 0.37 -29.08 16 26 O -0.52 -18.33 13.42 -51.35 -0.69 -19.02 16 27 C -0.08 -1.79 9.12 22.58 0.21 -1.59 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.15 1.72 8.05 -2.91 -0.02 1.70 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 35 H 0.07 1.84 5.90 -2.39 -0.01 1.83 16 36 H 0.10 3.32 8.10 -2.39 -0.02 3.30 16 37 H 0.11 3.49 7.86 -2.39 -0.02 3.48 16 38 H 0.10 3.54 7.37 -2.39 -0.02 3.52 16 39 H 0.07 3.03 7.46 -2.39 -0.02 3.01 16 40 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 41 H 0.12 5.66 6.20 -2.39 -0.01 5.65 16 42 H 0.12 4.14 6.70 -2.39 -0.02 4.12 16 43 H 0.41 11.07 9.10 -74.06 -0.67 10.39 16 44 H 0.14 2.99 6.99 -2.91 -0.02 2.96 16 Total: -1.00 -75.75 371.08 5.54 -70.21 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.37 Total: 32.80 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 4.73 Total: 21.94 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.19 Total: -70.96 kcal Atomic # 8 Polarization: -97.65 SS G_CDS: -0.40 Total: -98.06 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.75 5.54 -70.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738573297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.931 kcal (2) G-P(sol) polarization free energy of solvation -75.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds