Wall clock time and date at job start Tue Mar 31 2020 17:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 C 1.53004 * 109.46779 * 178.41663 * 3 2 1 5 5 C 1.53004 * 109.47154 * 58.41945 * 3 2 1 6 6 C 1.50702 * 109.47001 * 59.99618 * 5 3 2 7 7 O 1.20817 * 120.00218 * 0.02562 * 6 5 3 8 8 O 1.34231 * 119.99496 * 180.02562 * 6 5 3 9 9 C 1.45202 * 116.99798 * 180.02562 * 8 6 5 10 10 N 1.46498 * 109.47322 * 298.41487 * 3 2 1 11 11 S 1.65604 * 120.00203 * 306.16552 * 10 3 2 12 12 O 1.42098 * 104.27265 * 335.39850 * 11 10 3 13 13 O 1.42096 * 104.27582 * 207.54160 * 11 10 3 14 14 C 1.81399 * 104.44737 * 91.46943 * 11 10 3 15 15 C 1.53004 * 109.46977 * 175.27296 * 14 11 10 16 16 C 1.50695 * 115.54856 * 298.49184 * 15 14 11 17 17 H 1.08007 * 119.99637 * 114.51041 * 16 15 14 18 18 C 1.37872 * 120.00306 * 294.23111 * 16 15 14 19 19 N 1.31519 * 120.00388 * 172.62118 * 18 16 15 20 20 Si 1.86800 * 119.99837 * 352.62711 * 18 16 15 21 21 H 1.48499 * 109.47304 * 93.72477 * 20 18 16 22 22 H 1.48501 * 109.46875 * 213.72213 * 20 18 16 23 23 H 1.48498 * 109.47234 * 333.72345 * 20 18 16 24 24 C 1.52997 * 117.49717 * 84.16585 * 15 14 11 25 25 C 1.52996 * 117.49631 * 152.82454 * 15 14 11 26 26 H 1.09001 * 109.46878 * 60.00067 * 1 2 3 27 27 H 1.08999 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46938 * 300.00112 * 1 2 3 29 29 H 1.09002 * 109.47407 * 240.00309 * 2 1 3 30 30 H 1.09001 * 109.46878 * 119.99933 * 2 1 3 31 31 H 1.09008 * 109.46903 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47135 * 299.99779 * 4 3 2 33 33 H 1.08997 * 109.47152 * 60.00439 * 4 3 2 34 34 H 1.08994 * 109.46733 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.46886 * 299.99589 * 5 3 2 36 36 H 1.08995 * 109.47249 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.46452 * 299.99617 * 9 8 6 38 38 H 1.09002 * 109.47299 * 59.99382 * 9 8 6 39 39 H 0.97004 * 119.99682 * 126.16680 * 10 3 2 40 40 H 1.09003 * 109.47004 * 55.27329 * 14 11 10 41 41 H 1.09001 * 109.47080 * 295.27406 * 14 11 10 42 42 H 0.96993 * 120.00263 * 180.02562 * 19 18 16 43 43 H 1.08999 * 117.49517 * 215.00581 * 24 15 14 44 44 H 1.09000 * 117.50004 * 0.02562 * 24 15 14 45 45 H 1.09000 * 117.50528 * 359.97360 * 25 15 14 46 46 H 1.08998 * 117.49633 * 144.97835 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5695 1.4427 0.0399 5 6 1.4977 2.1752 1.2289 6 6 1.9678 1.4761 2.4785 7 8 2.6653 0.4932 2.3948 8 8 1.6114 1.9456 3.6845 9 6 2.1011 1.2223 4.8444 10 7 1.5831 2.1220 -1.2148 11 16 1.8924 1.4592 -2.7005 12 8 3.0390 0.6467 -2.4898 13 8 1.9365 2.5747 -3.5796 14 6 0.4390 0.4311 -3.0489 15 6 0.5515 -0.1496 -4.4600 16 6 0.5973 0.8610 -5.5769 17 1 1.4885 0.9605 -6.1790 18 6 -0.5005 1.6546 -5.8340 19 7 -0.4143 2.6331 -6.7086 20 14 -2.1102 1.3402 -4.9400 21 1 -2.1814 2.2001 -3.7314 22 1 -3.2470 1.6578 -5.8410 23 1 -2.1819 -0.0872 -4.5368 24 6 1.3684 -1.4316 -4.6332 25 6 -0.1582 -1.4764 -4.7364 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9328 2.4704 0.0403 32 1 3.9094 0.9372 0.9437 33 1 3.9558 0.9208 -0.8356 34 1 1.8614 3.2027 1.2291 35 1 0.4081 2.1750 1.2005 36 1 1.7413 1.7058 5.7526 37 1 1.7388 0.1948 4.8113 38 1 3.1911 1.2236 4.8399 39 1 1.0994 2.9603 -1.1488 40 1 -0.4623 1.0400 -2.9773 41 1 0.3869 -0.3817 -2.3246 42 1 -1.1865 3.1916 -6.8892 43 1 1.9389 -1.5440 -5.5551 44 1 1.8253 -1.8616 -3.7419 45 1 -0.7049 -1.9360 -3.9130 46 1 -0.5923 -1.6183 -5.7262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830782299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:03 Heat of formation + Delta-G solvation = -119.648203 kcal Electronic energy + Delta-G solvation = -29322.080066 eV Core-core repulsion = 25340.900675 eV Total energy + Delta-G solvation = -3981.179391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06164 -38.46480 -37.09820 -36.55035 -36.06494 -35.09282 -32.16836 -31.69738 -30.89265 -29.05218 -28.26576 -27.24349 -25.46472 -23.64402 -22.01540 -21.64350 -20.16766 -19.35824 -18.57711 -17.89224 -17.22302 -16.91594 -16.69820 -16.43771 -15.89874 -15.26957 -15.00372 -14.77157 -14.36229 -14.29721 -13.87201 -13.69199 -13.53943 -13.22457 -12.90209 -12.49317 -12.47707 -12.37103 -12.32689 -12.14753 -11.95277 -11.54229 -11.37930 -11.27079 -11.14191 -11.07799 -11.03335 -10.83460 -10.69023 -10.64811 -10.49450 -10.41854 -10.22204 -10.01216 -9.62309 -9.29652 -9.09377 -8.72611 -8.38545 -6.14048 -4.18411 0.97295 1.93687 2.39962 3.13355 3.29487 3.36272 3.40323 4.29641 4.34430 4.50494 4.58261 4.68922 4.78542 4.80054 4.84028 4.87189 4.93074 5.07496 5.17632 5.22040 5.23492 5.32171 5.40433 5.50808 5.65929 5.68220 5.78557 5.93573 5.95103 6.04203 6.05455 6.07791 6.18353 6.25192 6.30335 6.46624 6.47602 6.63150 6.79457 6.87052 7.08293 7.23883 7.51381 7.61564 8.41179 8.91705 9.47165 10.97854 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.004065 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.669344 B = 6885.579470 C = 6985.763548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.168 4.168 3 C 0.206 3.794 4 C -0.201 4.201 5 C -0.120 4.120 6 C 0.467 3.533 7 O -0.491 6.491 8 O -0.361 6.361 9 C 0.035 3.965 10 N -1.126 6.126 11 S 2.616 3.384 12 O -0.963 6.963 13 O -0.923 6.923 14 C -0.589 4.589 15 C 0.002 3.998 16 C -0.505 4.505 17 H 0.086 0.914 18 C 0.093 3.907 19 N -0.876 5.876 20 Si 0.851 3.149 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.244 1.244 24 C -0.183 4.183 25 C -0.176 4.176 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.266 0.734 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -2.401 21.556 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.206 4.206 3 C 0.117 3.883 4 C -0.259 4.259 5 C -0.159 4.159 6 C 0.309 3.691 7 O -0.379 6.379 8 O -0.278 6.278 9 C -0.059 4.059 10 N -0.881 5.881 11 S 2.711 3.289 12 O -0.953 6.953 13 O -0.913 6.913 14 C -0.720 4.720 15 C -0.001 4.001 16 C -0.542 4.542 17 H 0.104 0.896 18 C -0.112 4.112 19 N -0.510 5.510 20 Si 0.678 3.322 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.167 1.167 24 C -0.220 4.220 25 C -0.215 4.215 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.244 0.756 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.910 -2.540 20.928 21.168 hybrid contribution -1.960 0.048 0.856 2.140 sum -0.051 -2.492 21.784 21.926 Atomic orbital electron populations 1.22148 0.95821 1.02424 1.02449 1.22507 0.96057 0.95948 1.06131 1.19684 0.94979 0.91205 0.82436 1.22960 0.93327 1.02852 1.06739 1.21733 1.04214 1.01240 0.88674 1.23472 0.77545 0.82988 0.85065 1.90591 1.34790 1.25571 1.86918 1.86511 1.70008 1.55881 1.15386 1.23270 1.00224 0.97158 0.85211 1.56220 1.73940 1.35507 1.22441 1.04977 0.76671 0.75711 0.71526 1.93428 1.45796 1.71790 1.84327 1.93651 1.86235 1.49410 1.62014 1.30600 1.20402 1.14298 1.06675 1.18845 1.02691 0.88477 0.90037 1.20322 1.02340 1.17042 1.14486 0.89638 1.24871 0.98309 0.93647 0.94417 1.69894 1.30469 1.16965 1.33702 0.87236 0.84304 0.80608 0.80048 1.20447 1.21249 1.16707 1.23001 0.93972 1.02767 1.02296 1.23042 0.93748 1.03207 1.01551 0.91645 0.92024 0.92662 0.90042 0.87646 0.92930 0.89787 0.87481 0.86837 0.86639 0.88189 0.91789 0.91775 0.75647 0.86649 0.86629 0.92373 0.88896 0.90082 0.91085 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.27 37.16 0.31 -1.67 16 2 C -0.17 -2.21 4.07 -26.73 -0.11 -2.32 16 3 C 0.21 2.66 0.50 -131.82 -0.07 2.60 16 4 C -0.20 -2.84 8.16 37.16 0.30 -2.54 16 5 C -0.12 -1.15 4.61 -27.88 -0.13 -1.28 16 6 C 0.47 4.87 7.38 36.01 0.27 5.14 16 7 O -0.49 -6.11 11.10 -18.74 -0.21 -6.32 16 8 O -0.36 -3.31 10.57 -39.26 -0.41 -3.72 16 9 C 0.04 0.23 10.56 101.05 1.07 1.30 16 10 N -1.13 -16.39 4.71 0.54 0.00 -16.39 16 11 S 2.62 52.11 4.80 -107.50 -0.52 51.59 16 12 O -0.96 -19.81 13.14 -57.54 -0.76 -20.56 16 13 O -0.92 -22.89 17.03 -57.54 -0.98 -23.87 16 14 C -0.59 -11.57 3.83 37.16 0.14 -11.43 16 15 C 0.00 0.05 0.84 -155.66 -0.13 -0.08 16 16 C -0.51 -14.00 8.04 -34.44 -0.28 -14.28 16 17 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 18 C 0.09 2.63 5.46 -17.82 -0.10 2.53 16 19 N -0.88 -26.54 13.96 55.43 0.77 -25.77 16 20 Si 0.85 20.24 25.07 -169.99 -4.26 15.98 16 21 H -0.28 -6.27 7.04 56.52 0.40 -5.87 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.24 -5.34 5.64 56.52 0.32 -5.02 16 24 C -0.18 -3.71 9.95 -26.70 -0.27 -3.97 16 25 C -0.18 -3.59 7.91 -26.70 -0.21 -3.80 16 26 H 0.06 0.81 4.94 -51.93 -0.26 0.55 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.53 6.40 -51.93 -0.33 0.19 16 29 H 0.08 1.20 5.39 -51.93 -0.28 0.92 16 30 H 0.11 1.36 5.56 -51.93 -0.29 1.07 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 1.14 5.52 -51.93 -0.29 0.85 16 33 H 0.11 1.79 5.20 -51.93 -0.27 1.52 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 0.91 6.40 -51.93 -0.33 0.57 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 39 H 0.41 4.97 8.62 -34.48 -0.30 4.68 16 40 H 0.12 2.25 5.02 -51.92 -0.26 1.99 16 41 H 0.12 1.88 5.07 -51.92 -0.26 1.61 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -34.86 355.61 -6.94 -41.80 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.74 Total: 11.70 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 0.80 Total: -29.80 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.78 Total: -42.16 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -2.36 Total: -54.47 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.26 Total: 15.98 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.52 Total: 51.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.86 -6.94 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830782299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.853 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds