Wall clock time and date at job start Tue Mar 31 2020 17:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 C 1.53004 * 109.46779 * 178.41663 * 3 2 1 5 5 C 1.53004 * 109.47154 * 58.41945 * 3 2 1 6 6 C 1.50702 * 109.47001 * 59.99618 * 5 3 2 7 7 O 1.20817 * 120.00218 * 0.02562 * 6 5 3 8 8 O 1.34231 * 119.99496 * 180.02562 * 6 5 3 9 9 C 1.45202 * 116.99798 * 180.02562 * 8 6 5 10 10 N 1.46498 * 109.47322 * 298.41487 * 3 2 1 11 11 S 1.65604 * 120.00203 * 306.16552 * 10 3 2 12 12 O 1.42098 * 104.27265 * 335.39850 * 11 10 3 13 13 O 1.42096 * 104.27582 * 207.54160 * 11 10 3 14 14 C 1.81399 * 104.44737 * 91.46943 * 11 10 3 15 15 C 1.53004 * 109.46977 * 175.27296 * 14 11 10 16 16 C 1.50695 * 115.54856 * 298.49184 * 15 14 11 17 17 H 1.08007 * 119.99637 * 114.51041 * 16 15 14 18 18 C 1.37872 * 120.00306 * 294.23111 * 16 15 14 19 19 N 1.31519 * 120.00388 * 172.62118 * 18 16 15 20 20 Si 1.86800 * 119.99837 * 352.62711 * 18 16 15 21 21 H 1.48499 * 109.47304 * 93.72477 * 20 18 16 22 22 H 1.48501 * 109.46875 * 213.72213 * 20 18 16 23 23 H 1.48498 * 109.47234 * 333.72345 * 20 18 16 24 24 C 1.52997 * 117.49717 * 84.16585 * 15 14 11 25 25 C 1.52996 * 117.49631 * 152.82454 * 15 14 11 26 26 H 1.09001 * 109.46878 * 60.00067 * 1 2 3 27 27 H 1.08999 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46938 * 300.00112 * 1 2 3 29 29 H 1.09002 * 109.47407 * 240.00309 * 2 1 3 30 30 H 1.09001 * 109.46878 * 119.99933 * 2 1 3 31 31 H 1.09008 * 109.46903 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47135 * 299.99779 * 4 3 2 33 33 H 1.08997 * 109.47152 * 60.00439 * 4 3 2 34 34 H 1.08994 * 109.46733 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.46886 * 299.99589 * 5 3 2 36 36 H 1.08995 * 109.47249 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.46452 * 299.99617 * 9 8 6 38 38 H 1.09002 * 109.47299 * 59.99382 * 9 8 6 39 39 H 0.97004 * 119.99682 * 126.16680 * 10 3 2 40 40 H 1.09003 * 109.47004 * 55.27329 * 14 11 10 41 41 H 1.09001 * 109.47080 * 295.27406 * 14 11 10 42 42 H 0.96993 * 120.00263 * 180.02562 * 19 18 16 43 43 H 1.08999 * 117.49517 * 215.00581 * 24 15 14 44 44 H 1.09000 * 117.50004 * 0.02562 * 24 15 14 45 45 H 1.09000 * 117.50528 * 359.97360 * 25 15 14 46 46 H 1.08998 * 117.49633 * 144.97835 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5695 1.4427 0.0399 5 6 1.4977 2.1752 1.2289 6 6 1.9678 1.4761 2.4785 7 8 2.6653 0.4932 2.3948 8 8 1.6114 1.9456 3.6845 9 6 2.1011 1.2223 4.8444 10 7 1.5831 2.1220 -1.2148 11 16 1.8924 1.4592 -2.7005 12 8 3.0390 0.6467 -2.4898 13 8 1.9365 2.5747 -3.5796 14 6 0.4390 0.4311 -3.0489 15 6 0.5515 -0.1496 -4.4600 16 6 0.5973 0.8610 -5.5769 17 1 1.4885 0.9605 -6.1790 18 6 -0.5005 1.6546 -5.8340 19 7 -0.4143 2.6331 -6.7086 20 14 -2.1102 1.3402 -4.9400 21 1 -2.1814 2.2001 -3.7314 22 1 -3.2470 1.6578 -5.8410 23 1 -2.1819 -0.0872 -4.5368 24 6 1.3684 -1.4316 -4.6332 25 6 -0.1582 -1.4764 -4.7364 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9328 2.4704 0.0403 32 1 3.9094 0.9372 0.9437 33 1 3.9558 0.9208 -0.8356 34 1 1.8614 3.2027 1.2291 35 1 0.4081 2.1750 1.2005 36 1 1.7413 1.7058 5.7526 37 1 1.7388 0.1948 4.8113 38 1 3.1911 1.2236 4.8399 39 1 1.0994 2.9603 -1.1488 40 1 -0.4623 1.0400 -2.9773 41 1 0.3869 -0.3817 -2.3246 42 1 -1.1865 3.1916 -6.8892 43 1 1.9389 -1.5440 -5.5551 44 1 1.8253 -1.8616 -3.7419 45 1 -0.7049 -1.9360 -3.9130 46 1 -0.5923 -1.6183 -5.7262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830782299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:02 Heat of formation + Delta-G solvation = -146.183573 kcal Electronic energy + Delta-G solvation = -29323.230726 eV Core-core repulsion = 25340.900675 eV Total energy + Delta-G solvation = -3982.330051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85574 -39.42437 -38.80849 -37.87368 -37.18567 -36.75868 -34.27772 -32.77160 -31.85105 -30.13833 -29.63620 -27.88613 -27.50826 -24.60184 -23.27148 -22.87287 -21.35165 -20.96421 -20.04143 -18.69480 -18.66900 -18.50073 -17.66118 -17.23406 -17.17818 -16.86796 -16.64956 -15.83674 -15.78902 -15.56401 -15.18699 -14.82949 -14.60469 -14.50986 -14.36650 -13.99502 -13.84008 -13.48192 -13.29529 -13.09592 -12.93668 -12.89466 -12.83562 -12.70483 -12.62153 -12.51956 -12.29115 -12.25061 -12.15878 -11.92987 -11.80037 -11.56423 -11.49116 -11.44447 -11.07540 -10.93581 -10.68224 -10.55318 -10.10926 -8.27211 -6.37332 -0.56418 1.18730 1.28231 1.39319 1.53410 1.62796 2.13246 2.37399 2.92987 3.00780 3.23826 3.34236 3.42605 3.73328 3.82508 3.86514 4.02311 4.08868 4.26039 4.33446 4.35752 4.37961 4.40060 4.44862 4.48537 4.56811 4.61479 4.74869 4.77814 4.81147 4.89495 4.97483 4.99365 5.11467 5.15891 5.19328 5.21940 5.41893 5.48623 5.49373 5.63843 5.69318 6.17850 6.26231 6.70246 6.77446 7.32284 8.89709 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.004065 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.669344 B = 6885.579470 C = 6985.763548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.171 4.171 3 C 0.201 3.799 4 C -0.203 4.203 5 C -0.117 4.117 6 C 0.470 3.530 7 O -0.517 6.517 8 O -0.362 6.362 9 C 0.028 3.972 10 N -1.108 6.108 11 S 2.619 3.381 12 O -0.978 6.978 13 O -0.986 6.986 14 C -0.582 4.582 15 C -0.031 4.031 16 C -0.509 4.509 17 H 0.026 0.974 18 C 0.030 3.970 19 N -0.937 5.937 20 Si 0.909 3.091 21 H -0.254 1.254 22 H -0.292 1.292 23 H -0.206 1.206 24 C -0.180 4.180 25 C -0.158 4.158 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.424 0.576 40 H 0.123 0.877 41 H 0.156 0.844 42 H 0.267 0.733 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -3.735 25.555 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.210 4.210 3 C 0.113 3.887 4 C -0.261 4.261 5 C -0.156 4.156 6 C 0.314 3.686 7 O -0.406 6.406 8 O -0.278 6.278 9 C -0.065 4.065 10 N -0.868 5.868 11 S 2.715 3.285 12 O -0.968 6.968 13 O -0.976 6.976 14 C -0.713 4.713 15 C -0.034 4.034 16 C -0.546 4.546 17 H 0.045 0.955 18 C -0.169 4.169 19 N -0.575 5.575 20 Si 0.731 3.269 21 H -0.179 1.179 22 H -0.218 1.218 23 H -0.128 1.128 24 C -0.217 4.217 25 C -0.196 4.196 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.260 0.740 40 H 0.141 0.859 41 H 0.174 0.826 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.502 -3.878 24.951 25.256 hybrid contribution -1.023 0.436 -0.349 1.165 sum -1.524 -3.443 24.602 24.888 Atomic orbital electron populations 1.22199 0.94118 1.03540 1.03321 1.22524 0.97598 0.95520 1.05328 1.19817 0.94124 0.91889 0.82885 1.22946 0.94728 1.02917 1.05536 1.21714 1.05698 1.01583 0.86585 1.23523 0.76965 0.82479 0.85659 1.90587 1.36015 1.26763 1.87277 1.86498 1.69813 1.56017 1.15489 1.23536 1.00289 0.97495 0.85190 1.55678 1.73902 1.35944 1.21246 1.04524 0.76892 0.75056 0.71979 1.93423 1.46799 1.71912 1.84668 1.93584 1.87220 1.51848 1.64925 1.30489 1.19983 1.15452 1.05383 1.18760 1.06217 0.88424 0.89994 1.20409 1.00243 1.18526 1.15411 0.95530 1.25858 1.02697 0.93018 0.95377 1.70078 1.31821 1.18948 1.36636 0.86320 0.78228 0.83009 0.79387 1.17899 1.21838 1.12774 1.23102 0.94600 1.01011 1.03036 1.23121 0.93786 1.00132 1.02598 0.92225 0.90878 0.90327 0.91979 0.87395 0.92272 0.89216 0.90430 0.84759 0.84031 0.85384 0.91749 0.92017 0.74008 0.85929 0.82613 0.92414 0.90169 0.87291 0.87137 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.27 71.98 0.59 -2.63 16 2 C -0.17 -4.00 4.07 30.60 0.12 -3.88 16 3 C 0.20 4.72 0.50 3.61 0.00 4.72 16 4 C -0.20 -5.57 8.16 71.98 0.59 -4.98 16 5 C -0.12 -1.82 4.61 29.85 0.14 -1.69 16 6 C 0.47 8.35 7.38 71.24 0.53 8.88 16 7 O -0.52 -11.69 11.10 21.99 0.24 -11.45 16 8 O -0.36 -5.42 10.57 -51.43 -0.54 -5.96 16 9 C 0.03 0.29 10.56 113.37 1.20 1.48 16 10 N -1.11 -30.24 4.71 -152.20 -0.72 -30.96 16 11 S 2.62 103.89 4.80 -56.49 -0.27 103.62 16 12 O -0.98 -40.63 13.14 -127.65 -1.68 -42.30 16 13 O -0.99 -50.83 17.03 -127.65 -2.17 -53.00 16 14 C -0.58 -21.38 3.83 71.98 0.28 -21.11 16 15 C -0.03 -1.39 0.84 -52.93 -0.04 -1.44 16 16 C -0.51 -29.25 8.04 25.60 0.21 -29.04 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 18 C 0.03 1.74 5.46 84.65 0.46 2.20 16 19 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 20 Si 0.91 40.51 25.07 68.60 1.72 42.23 16 21 H -0.25 -10.28 7.04 99.48 0.70 -9.58 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.21 -7.86 5.64 99.48 0.56 -7.30 16 24 C -0.18 -7.04 9.95 30.62 0.30 -6.73 16 25 C -0.16 -5.88 7.91 30.62 0.24 -5.63 16 26 H 0.06 1.17 4.94 -2.39 -0.01 1.16 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.08 6.40 -2.39 -0.02 1.06 16 29 H 0.06 1.68 5.39 -2.39 -0.01 1.67 16 30 H 0.11 2.50 5.56 -2.39 -0.01 2.49 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.09 2.35 5.52 -2.39 -0.01 2.34 16 33 H 0.08 2.62 5.20 -2.39 -0.01 2.61 16 34 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.14 1.50 6.40 -2.39 -0.02 1.49 16 36 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 38 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 39 H 0.42 9.32 8.62 -96.74 -0.83 8.48 16 40 H 0.12 4.34 5.02 -2.39 -0.01 4.32 16 41 H 0.16 4.40 5.07 -2.39 -0.01 4.38 16 42 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 45 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 46 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -81.80 355.61 1.52 -80.27 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.03 Total: 36.75 kcal Atomic # 6 Polarization: -64.45 SS G_CDS: 4.62 Total: -59.84 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -0.42 Total: -90.32 kcal Atomic # 8 Polarization: -108.57 SS G_CDS: -4.15 Total: -112.72 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.72 Total: 42.23 kcal Atomic # 16 Polarization: 103.89 SS G_CDS: -0.27 Total: 103.62 kcal Total: -81.80 1.52 -80.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830782299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.912 kcal (2) G-P(sol) polarization free energy of solvation -81.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds