Wall clock time and date at job start Tue Mar 31 2020 17:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47268 * 2 1 4 4 C 1.50709 * 109.46827 * 120.00260 * 2 1 3 5 5 O 1.21283 * 119.99856 * 120.00107 * 4 2 1 6 6 N 1.34771 * 119.99452 * 299.99812 * 4 2 1 7 7 S 1.65606 * 119.99478 * 180.02562 * 6 4 2 8 8 O 1.42094 * 104.27817 * 308.92926 * 7 6 4 9 9 O 1.42106 * 104.27580 * 181.07158 * 7 6 4 10 10 C 1.81396 * 104.45103 * 65.00142 * 7 6 4 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.53005 * 109.47271 * 239.99996 * 2 1 3 21 21 H 1.09000 * 109.48061 * 179.97438 * 20 2 1 22 22 C 1.53089 * 109.47850 * 59.94568 * 20 2 1 23 23 C 1.53178 * 109.16114 * 182.41020 * 22 20 2 24 24 C 1.53176 * 109.04072 * 56.97901 * 23 22 20 25 25 C 1.53093 * 109.16116 * 303.02345 * 24 23 22 26 26 O 1.42904 * 109.47747 * 300.00261 * 20 2 1 27 27 H 1.08993 * 109.47293 * 300.00211 * 1 2 3 28 28 H 1.09009 * 109.46974 * 59.99909 * 1 2 3 29 29 H 1.08997 * 109.47359 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46905 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46957 * 300.00069 * 3 2 1 32 32 H 1.09002 * 109.46970 * 60.00267 * 3 2 1 33 33 H 0.96995 * 120.00337 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 35 35 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 36 36 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 37 37 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 38 38 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.52194 * 302.30851 * 22 20 2 40 40 H 1.08997 * 109.52500 * 62.50640 * 22 20 2 41 41 H 1.09001 * 109.54037 * 297.11058 * 23 22 20 42 42 H 1.09002 * 109.61946 * 176.89069 * 23 22 20 43 43 H 1.08998 * 109.52480 * 183.11626 * 24 23 22 44 44 H 1.09004 * 109.57010 * 62.95444 * 24 23 22 45 45 H 1.09001 * 109.48100 * 297.62292 * 25 24 23 46 46 H 1.09002 * 109.48280 * 177.58974 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7066 -0.2500 2.4545 7 16 2.2591 -1.0304 3.8067 8 8 1.9096 -2.3911 3.5934 9 8 1.7056 -0.2926 4.8878 10 6 4.0597 -0.8189 3.7475 11 6 4.6939 -1.5041 4.9595 12 6 6.1898 -1.3289 4.9100 13 1 6.6429 -0.7830 4.0957 14 6 6.9800 -1.8647 5.9048 15 7 6.4282 -2.5290 6.8967 16 14 8.8342 -1.6469 5.8438 17 1 9.1636 -0.1990 5.8648 18 1 9.4497 -2.3121 7.0202 19 1 9.3636 -2.2569 4.5976 20 6 2.0400 -0.7213 -1.2493 21 1 3.1300 -0.7209 -1.2496 22 6 1.5287 -0.0005 -2.4994 23 6 1.9931 -0.7626 -3.7443 24 6 1.4928 -2.2079 -3.6611 25 6 2.0054 -2.8433 -2.3661 26 8 1.5637 -2.0686 -1.2494 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.1487 0.5384 2.5435 34 1 4.3014 0.2439 3.7637 35 1 4.4481 -1.2658 2.8324 36 1 4.4521 -2.5669 4.9438 37 1 4.3053 -1.0566 5.8744 38 1 6.9841 -2.9062 7.5964 39 1 0.4395 0.0351 -2.4794 40 1 1.9270 1.0138 -2.5236 41 1 3.0821 -0.7558 -3.7909 42 1 1.5870 -0.2870 -4.6372 43 1 1.8653 -2.7722 -4.5161 44 1 0.4028 -2.2178 -3.6651 45 1 3.0950 -2.8709 -2.3812 46 1 1.6172 -3.8583 -2.2806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870269834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:52 Heat of formation + Delta-G solvation = -178.782095 kcal Electronic energy + Delta-G solvation = -28314.786696 eV Core-core repulsion = 24331.043067 eV Total energy + Delta-G solvation = -3983.743629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92852 -39.08065 -36.68460 -35.69382 -35.55156 -34.18850 -33.86838 -33.79671 -31.15845 -30.13404 -27.74703 -25.62227 -25.32991 -24.80532 -23.20214 -21.64060 -20.78688 -19.65415 -19.32380 -17.80112 -17.17947 -16.54529 -16.38874 -16.16873 -15.67852 -15.33452 -15.02311 -14.85330 -14.72447 -14.63392 -14.52724 -13.97144 -13.42354 -13.27238 -13.06438 -12.84179 -12.63693 -12.51806 -12.43540 -12.23064 -11.95222 -11.77442 -11.66517 -11.54982 -11.53241 -11.36139 -11.23716 -11.04920 -10.97162 -10.82786 -10.75198 -10.47616 -10.38159 -10.33196 -9.94541 -9.67617 -9.49740 -9.15788 -8.47717 -6.10072 -4.15542 0.56340 2.21938 2.79389 3.29360 3.33815 3.35924 3.52076 3.96142 4.17452 4.23679 4.39080 4.53460 4.57764 4.61826 4.66029 4.73344 4.79221 4.86964 5.01488 5.05873 5.22731 5.25057 5.26992 5.32532 5.37341 5.46317 5.53489 5.55509 5.59199 5.62869 5.65119 5.69523 5.76056 5.80385 5.83630 5.96236 6.05939 6.48877 6.71564 7.15386 7.30928 7.37978 7.60298 7.82651 8.19066 8.87069 9.48705 11.01075 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.003292 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.708374 B = 8504.180937 C = 9389.937055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.148 4.148 4 C 0.542 3.458 5 O -0.471 6.471 6 N -1.059 6.059 7 S 2.565 3.435 8 O -0.937 6.937 9 O -0.957 6.957 10 C -0.576 4.576 11 C 0.030 3.970 12 C -0.519 4.519 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.111 3.889 21 H 0.067 0.933 22 C -0.153 4.153 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.062 3.938 26 O -0.361 6.361 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.426 0.574 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 9.066 -21.817 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.206 4.206 4 C 0.327 3.673 5 O -0.340 6.340 6 N -0.821 5.821 7 S 2.665 3.335 8 O -0.927 6.927 9 O -0.947 6.947 10 C -0.711 4.711 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.729 3.271 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.052 3.948 21 H 0.085 0.915 22 C -0.191 4.191 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.015 4.015 26 O -0.280 6.280 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.493 7.691 -20.989 25.608 hybrid contribution 1.359 0.847 -0.443 1.661 sum -11.134 8.539 -21.432 25.617 Atomic orbital electron populations 1.21894 0.91401 1.03978 1.02734 1.20918 0.98662 0.96322 0.92094 1.21975 1.02404 0.92436 1.03757 1.20341 0.78932 0.83636 0.84364 1.90913 1.34238 1.22893 1.85979 1.55410 1.61048 1.43004 1.22604 1.06689 0.79817 0.74506 0.72455 1.93601 1.82436 1.33158 1.83487 1.93584 1.77772 1.72908 1.50465 1.30339 1.18686 1.10474 1.11566 1.18980 0.97387 0.95964 0.88593 1.20941 0.90155 1.35780 1.09021 0.92043 1.25062 0.99273 0.94894 0.95225 1.69946 1.35949 1.35286 1.11669 0.86509 0.84595 0.78393 0.77648 1.20079 1.21058 1.20044 1.21805 0.98006 0.82955 0.92012 0.91470 1.22353 1.02371 0.99682 0.94655 1.21579 1.01077 0.95534 0.97767 1.22220 1.01862 0.96604 0.98795 1.22539 0.98814 0.95046 0.85068 1.88004 1.73382 1.21699 1.44892 0.91909 0.90815 0.90710 0.91228 0.90378 0.90994 0.73943 0.86123 0.85136 0.94598 0.94788 0.92457 0.90472 0.90487 0.91752 0.91513 0.91053 0.91153 0.93069 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 7.87 37.16 0.29 -0.89 16 2 C -0.07 -0.74 0.48 -155.65 -0.07 -0.82 16 3 C -0.15 -1.00 8.02 37.16 0.30 -0.70 16 4 C 0.54 7.76 6.07 -10.98 -0.07 7.69 16 5 O -0.47 -8.73 13.39 -22.28 -0.30 -9.02 16 6 N -1.06 -14.34 5.39 31.22 0.17 -14.18 16 7 S 2.57 48.60 5.11 -107.50 -0.55 48.05 16 8 O -0.94 -21.46 17.04 -64.79 -1.10 -22.56 16 9 O -0.96 -19.48 18.08 -57.54 -1.04 -20.52 16 10 C -0.58 -11.75 5.82 37.16 0.22 -11.53 16 11 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.11 1.15 1.45 -26.68 -0.04 1.11 16 21 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 22 C -0.15 -1.09 4.70 -26.59 -0.12 -1.21 16 23 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 24 C -0.16 -1.17 6.14 -26.59 -0.16 -1.34 16 25 C 0.06 0.63 6.84 37.21 0.25 0.89 16 26 O -0.36 -4.63 8.63 -53.49 -0.46 -5.09 16 27 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 28 H 0.07 0.45 6.38 -51.92 -0.33 0.12 16 29 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.36 6.49 -51.93 -0.34 0.03 16 32 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 33 H 0.43 3.97 7.62 -34.48 -0.26 3.71 16 34 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 35 H 0.13 2.63 7.19 -51.93 -0.37 2.25 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.08 0.52 6.31 -51.93 -0.33 0.19 16 40 H 0.08 0.43 6.57 -51.93 -0.34 0.08 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -37.82 373.69 -9.40 -47.22 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.35 Total: 0.69 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.12 Total: -20.58 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.90 Total: -40.31 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -2.90 Total: -57.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 48.60 SS G_CDS: -0.55 Total: 48.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.82 -9.40 -47.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.561 kcal (2) G-P(sol) polarization free energy of solvation -37.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds