Wall clock time and date at job start Tue Mar 31 2020 18:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47612 * 2 1 4 4 C 1.50700 * 109.47009 * 239.99873 * 2 1 3 5 5 H 1.08003 * 119.99824 * 237.69878 * 4 2 1 6 6 C 1.37869 * 120.00052 * 57.69520 * 4 2 1 7 7 N 1.31514 * 120.00319 * 6.58753 * 6 4 2 8 8 Si 1.86810 * 120.00084 * 186.58026 * 6 4 2 9 9 H 1.48498 * 109.46720 * 84.99686 * 8 6 4 10 10 H 1.48501 * 109.47011 * 204.99763 * 8 6 4 11 11 H 1.48500 * 109.46968 * 324.99908 * 8 6 4 12 12 C 1.53008 * 109.46917 * 120.00011 * 2 1 3 13 13 S 1.81390 * 109.47031 * 299.99676 * 12 2 1 14 14 O 1.42097 * 110.54423 * 291.62411 * 13 12 2 15 15 O 1.42099 * 110.54298 * 68.37782 * 13 12 2 16 16 N 1.65603 * 104.45114 * 179.97438 * 13 12 2 17 17 C 1.46505 * 119.99514 * 64.99959 * 16 13 12 18 18 C 1.53005 * 109.46881 * 165.00264 * 17 16 13 19 19 C 1.52996 * 109.46991 * 180.02562 * 18 17 16 20 20 C 1.53005 * 109.46991 * 179.97438 * 19 18 17 21 21 H 1.08993 * 110.32832 * 55.78418 * 20 19 18 22 22 C 1.54491 * 110.36643 * 178.14614 * 20 19 18 23 23 C 1.54565 * 102.14593 * 134.18170 * 22 20 19 24 24 O 1.45827 * 104.44496 * 333.14713 * 23 22 20 25 25 C 1.34066 * 109.90606 * 30.60442 * 24 23 22 26 26 O 1.20823 * 125.09481 * 159.16597 * 25 24 23 27 27 H 1.08999 * 109.46687 * 306.67005 * 1 2 3 28 28 H 1.08996 * 109.46928 * 66.66941 * 1 2 3 29 29 H 1.08997 * 109.47375 * 186.67087 * 1 2 3 30 30 H 1.09005 * 109.47431 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46715 * 300.00152 * 3 2 1 32 32 H 1.09007 * 109.47274 * 59.99927 * 3 2 1 33 33 H 0.96997 * 120.00484 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46728 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47138 * 60.00117 * 12 2 1 36 36 H 0.96995 * 120.00310 * 245.00447 * 16 13 12 37 37 H 1.09000 * 109.46839 * 285.00081 * 17 16 13 38 38 H 1.09003 * 109.47501 * 45.00314 * 17 16 13 39 39 H 1.09008 * 109.46977 * 299.99851 * 18 17 16 40 40 H 1.08994 * 109.47118 * 59.99762 * 18 17 16 41 41 H 1.09004 * 109.47428 * 300.00116 * 19 18 17 42 42 H 1.09003 * 109.47476 * 59.99998 * 19 18 17 43 43 H 1.09005 * 110.86554 * 252.34423 * 22 20 19 44 44 H 1.08998 * 110.87052 * 16.01689 * 22 20 19 45 45 H 1.09007 * 110.44178 * 214.40862 * 23 22 20 46 46 H 1.09007 * 110.54797 * 91.94304 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6835 -1.5664 -1.1318 6 6 1.6605 -0.2678 -2.4821 7 7 0.9756 0.8478 -2.6085 8 14 2.1296 -1.2526 -3.9986 9 1 1.1191 -2.3158 -4.2305 10 1 2.1798 -0.3516 -5.1780 11 1 3.4629 -1.8733 -3.7928 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7303 14 8 2.0480 1.4100 2.8544 15 8 0.0280 -0.0183 2.8544 16 7 2.0529 -0.7408 3.9937 17 6 3.5014 -0.7982 4.2060 18 6 3.7902 -1.3347 5.6095 19 6 5.3028 -1.3940 5.8315 20 6 5.5916 -1.9299 7.2352 21 1 5.1124 -2.8986 7.3767 22 6 7.1152 -2.0422 7.4649 23 6 7.2793 -1.4175 8.8691 24 8 6.1581 -0.4928 8.9892 25 6 5.1136 -0.9478 8.2825 26 8 3.9630 -0.6224 8.4559 27 1 -0.3633 0.6137 0.8243 28 1 -0.3633 0.4070 -0.9436 29 1 -0.3634 -1.0207 0.1194 30 1 3.1302 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7137 1.1590 -3.4891 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 1.4557 -1.2152 4.5929 37 1 3.9513 -1.4588 3.4648 38 1 3.9233 0.2018 4.1053 39 1 3.3402 -0.6741 6.3507 40 1 3.3683 -2.3346 5.7102 41 1 5.7532 -2.0543 5.0903 42 1 5.7244 -0.3939 5.7309 43 1 7.4320 -3.0852 7.4645 44 1 7.6638 -1.4684 6.7181 45 1 8.2251 -0.8799 8.9384 46 1 7.2224 -2.1869 9.6392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872564310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:38 Heat of formation + Delta-G solvation = -171.153448 kcal Electronic energy + Delta-G solvation = -27246.458581 eV Core-core repulsion = 23263.045756 eV Total energy + Delta-G solvation = -3983.412826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.46023 -37.83530 -36.84077 -36.38467 -36.25205 -35.25129 -34.51199 -31.67331 -31.43947 -28.40408 -26.61489 -25.70361 -25.24093 -24.93053 -23.02404 -21.94845 -20.82992 -19.54625 -18.67260 -17.90227 -17.32195 -17.17989 -16.51660 -16.04597 -15.81799 -15.61531 -15.15878 -14.75296 -14.60578 -14.32986 -14.25031 -13.98421 -13.35392 -13.09385 -12.99735 -12.89514 -12.57223 -12.49901 -12.09302 -11.98984 -11.89615 -11.73631 -11.38892 -11.30680 -11.18688 -11.07786 -11.02860 -10.95994 -10.83812 -10.68928 -10.37633 -10.29182 -10.23157 -10.08300 -9.65347 -9.58745 -9.21254 -8.68621 -8.37750 -6.03745 -4.15375 0.91537 1.71139 2.82902 3.25522 3.25741 3.32786 3.33907 3.48353 3.74477 4.00394 4.26867 4.32642 4.40603 4.54009 4.63461 4.76982 4.87012 4.88801 5.01676 5.07554 5.12351 5.21078 5.28016 5.39218 5.46227 5.53460 5.65815 5.72424 5.87843 5.98349 6.18154 6.35222 6.39335 6.70199 6.80229 6.93204 7.05233 7.12987 7.18924 7.32546 7.50126 7.67841 7.98739 8.10722 8.34150 8.82892 9.49668 10.97365 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002479 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.595497 B =11290.728497 C =12116.520358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.594 3.406 14 O -0.965 6.965 15 O -0.966 6.966 16 N -1.131 6.131 17 C 0.116 3.884 18 C -0.138 4.138 19 C -0.103 4.103 20 C -0.153 4.153 21 H 0.118 0.882 22 C -0.154 4.154 23 C 0.052 3.948 24 O -0.349 6.349 25 C 0.482 3.518 26 O -0.445 6.445 27 H 0.027 0.973 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.412 0.588 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.969 -8.743 19.372 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.956 6.956 16 N -0.888 5.888 17 C -0.010 4.010 18 C -0.176 4.176 19 C -0.141 4.141 20 C -0.173 4.173 21 H 0.135 0.865 22 C -0.192 4.192 23 C -0.022 4.022 24 O -0.265 6.265 25 C 0.322 3.678 26 O -0.327 6.327 27 H 0.045 0.955 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.932 -7.379 19.444 24.490 hybrid contribution 0.508 -1.511 -0.914 1.838 sum 13.441 -8.891 18.530 24.557 Atomic orbital electron populations 1.22211 0.96993 0.99684 1.03013 1.17929 0.92731 0.92305 0.89090 1.22312 0.99675 0.97772 1.02431 1.20929 1.30052 1.13749 0.89433 0.92329 1.24942 0.95107 0.94821 0.98890 1.69812 1.38495 1.20155 1.23534 0.86565 0.78822 0.79963 0.82349 1.20563 1.21203 1.20039 1.30536 1.11172 1.12859 1.17026 1.05566 0.74383 0.75240 0.75625 1.93536 1.78148 1.38235 1.85534 1.93555 1.29551 1.86685 1.85830 1.55822 1.14069 1.71289 1.47613 1.21241 0.80581 1.01947 0.97270 1.21938 0.95555 1.02901 0.97250 1.21456 0.97056 1.02425 0.93188 1.22610 0.96944 1.00911 0.96825 0.86454 1.23090 0.95013 1.03694 0.97360 1.24144 0.88455 0.92019 0.97572 1.87053 1.24131 1.47338 1.68026 1.23146 0.84558 0.79433 0.80680 1.90730 1.15986 1.57754 1.68254 0.95459 0.88770 0.94582 0.94540 0.88433 0.95383 0.92708 0.86542 0.86300 0.75555 0.91836 0.90340 0.89522 0.90926 0.89589 0.90672 0.88303 0.88679 0.87065 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 7.58 37.16 0.28 -3.73 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.08 7.79 37.16 0.29 -3.79 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 6 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -24.13 9.39 55.43 0.52 -23.61 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -11.32 5.01 37.16 0.19 -11.14 16 13 S 2.59 49.05 4.49 -107.50 -0.48 48.57 16 14 O -0.96 -20.81 15.12 -57.54 -0.87 -21.68 16 15 O -0.97 -20.83 15.84 -57.54 -0.91 -21.74 16 16 N -1.13 -15.84 5.89 -10.61 -0.06 -15.90 16 17 C 0.12 1.34 6.13 -4.04 -0.02 1.32 16 18 C -0.14 -1.29 5.13 -26.73 -0.14 -1.43 16 19 C -0.10 -0.69 4.57 -26.73 -0.12 -0.81 16 20 C -0.15 -0.88 3.03 -90.68 -0.27 -1.16 16 21 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 22 C -0.15 -0.44 6.79 -25.13 -0.17 -0.61 16 23 C 0.05 0.19 7.90 37.98 0.30 0.49 16 24 O -0.35 -3.08 11.05 -38.48 -0.43 -3.50 16 25 C 0.48 4.72 7.75 36.31 0.28 5.00 16 26 O -0.44 -6.12 16.02 -18.41 -0.29 -6.41 16 27 H 0.03 0.65 5.96 -51.93 -0.31 0.34 16 28 H 0.09 2.51 5.99 -51.93 -0.31 2.20 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 32 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 35 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.41 5.02 8.62 -34.47 -0.30 4.73 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 39 H 0.09 1.01 6.13 -51.92 -0.32 0.69 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.09 0.23 7.81 -51.93 -0.41 -0.18 16 45 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.09 0.17 8.14 -51.92 -0.42 -0.25 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -35.36 371.40 -9.04 -44.40 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.25 Total: 4.53 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 0.16 Total: -25.76 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.46 Total: -39.51 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.50 Total: -53.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.48 Total: 48.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.36 -9.04 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872564310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.757 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds