Wall clock time and date at job start Tue Mar 31 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 S 1.81403 * 109.47153 * 60.00115 * 12 2 1 14 14 O 1.42100 * 110.54033 * 291.62070 * 13 12 2 15 15 O 1.42093 * 110.54359 * 68.37403 * 13 12 2 16 16 N 1.65606 * 104.44724 * 180.02562 * 13 12 2 17 17 C 1.46492 * 120.00135 * 64.99830 * 16 13 12 18 18 H 1.08997 * 110.01504 * 335.07419 * 17 16 13 19 19 C 1.53929 * 110.02654 * 96.45512 * 17 16 13 20 20 C 1.54404 * 106.63224 * 119.29694 * 19 17 16 21 21 C 1.54108 * 104.14596 * 22.86025 * 20 19 17 22 22 C 1.54106 * 103.65584 * 322.96003 * 21 20 19 23 23 O 1.42888 * 110.70326 * 204.24171 * 21 20 19 24 24 C 1.44990 * 104.55438 * 213.61535 * 23 21 20 25 25 C 1.54983 * 101.85486 * 35.22355 * 24 23 21 26 26 O 1.42516 * 110.91200 * 82.02949 * 21 20 19 27 27 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 32 32 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 36 36 H 0.97001 * 119.99859 * 245.00017 * 16 13 12 37 37 H 1.09003 * 110.02830 * 238.58720 * 19 17 16 38 38 H 1.08997 * 110.02956 * 359.95327 * 19 17 16 39 39 H 1.08997 * 110.50052 * 141.52714 * 20 19 17 40 40 H 1.08998 * 110.49448 * 264.06497 * 20 19 17 41 41 H 1.08998 * 110.49382 * 278.37755 * 22 21 20 42 42 H 1.09003 * 110.49857 * 155.71246 * 22 21 20 43 43 H 1.09001 * 110.95098 * 277.08619 * 24 23 21 44 44 H 1.09001 * 110.95477 * 153.36647 * 24 23 21 45 45 H 1.08997 * 110.69167 * 206.52738 * 25 24 23 46 46 H 1.08999 * 110.68765 * 83.32769 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8269 -0.4200 5.2204 10 1 1.8258 -2.5203 4.0076 11 1 3.8063 -1.1210 4.0081 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0530 -0.7407 -3.9937 17 6 1.6232 -2.1251 -4.2055 18 1 1.2777 -2.5563 -3.2659 19 6 0.4966 -2.1729 -5.2533 20 6 1.0175 -3.0355 -6.4232 21 6 2.1189 -3.9062 -5.7878 22 6 2.7909 -2.9602 -4.7738 23 8 3.0570 -4.3351 -6.7766 24 6 3.4716 -5.6534 -6.3380 25 6 2.1635 -6.2095 -5.7204 26 8 1.5562 -5.0389 -5.1309 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7089 1.1613 3.4844 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -1.7488 -1.2493 36 1 2.6993 -0.3364 -4.5934 37 1 -0.3951 -2.6279 -4.8222 38 1 0.2694 -1.1659 -5.6033 39 1 0.2186 -3.6611 -6.8214 40 1 1.4331 -2.4034 -7.2079 41 1 3.5132 -2.3153 -5.2742 42 1 3.2732 -3.5313 -3.9805 43 1 4.2587 -5.5846 -5.5870 44 1 3.7933 -6.2621 -7.1830 45 1 2.3847 -6.9547 -4.9564 46 1 1.5203 -6.6288 -6.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363976013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:13 Heat of formation + Delta-G solvation = -162.992573 kcal Electronic energy + Delta-G solvation = -28518.644167 eV Core-core repulsion = 24535.585223 eV Total energy + Delta-G solvation = -3983.058944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10888 -37.62093 -36.43956 -36.25635 -35.36584 -35.25930 -33.03503 -31.65611 -29.78107 -28.59613 -26.63573 -26.09980 -25.69857 -25.21217 -23.62667 -21.04271 -20.77431 -19.63562 -18.72298 -17.66044 -17.35817 -17.04189 -16.01792 -15.94891 -15.66070 -15.48636 -15.19111 -14.77214 -14.70566 -14.36042 -13.68167 -13.47238 -13.13873 -13.06208 -12.98682 -12.62660 -12.48756 -12.43417 -12.13496 -12.05912 -11.94124 -11.53759 -11.39307 -11.31574 -11.04847 -11.01013 -10.91428 -10.86426 -10.67483 -10.46633 -10.38993 -10.25568 -10.09669 -9.85245 -9.63550 -9.59358 -9.22718 -8.66542 -8.38952 -6.02417 -4.14433 0.89234 3.09332 3.21082 3.27400 3.32910 3.34421 3.60927 4.13836 4.25894 4.30354 4.34872 4.41934 4.56665 4.71787 4.73604 4.90834 5.06188 5.14396 5.22016 5.22507 5.23711 5.27670 5.38087 5.46958 5.50131 5.66246 5.70147 5.72959 5.83956 5.88838 6.14777 6.31289 6.40356 6.71961 6.81284 6.85911 6.92373 7.04047 7.16220 7.33198 7.52069 7.68650 7.99531 8.10763 8.34203 8.83753 9.50811 10.98883 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003443 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.533782 B = 8130.551987 C = 9212.731428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.583 4.583 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.966 6.966 16 N -1.124 6.124 17 C 0.156 3.844 18 H 0.095 0.905 19 C -0.134 4.134 20 C -0.124 4.124 21 C 0.251 3.749 22 C -0.149 4.149 23 O -0.365 6.365 24 C 0.013 3.987 25 C 0.018 3.982 26 O -0.364 6.364 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.263 0.737 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.411 0.589 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -12.267 -17.882 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.717 4.717 13 S 2.690 3.310 14 O -0.951 6.951 15 O -0.956 6.956 16 N -0.880 5.880 17 C 0.048 3.952 18 H 0.113 0.887 19 C -0.173 4.173 20 C -0.162 4.162 21 C 0.173 3.827 22 C -0.188 4.188 23 O -0.285 6.285 24 C -0.063 4.063 25 C -0.058 4.058 26 O -0.284 6.284 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.076 -11.305 -17.755 21.273 hybrid contribution 1.204 -1.103 0.917 1.873 sum 4.280 -12.408 -16.838 21.350 Atomic orbital electron populations 1.22272 0.96851 1.00628 1.02360 1.17918 0.92859 0.92165 0.89033 1.22274 0.99696 0.97851 1.02319 1.20907 1.31765 1.12081 0.89437 0.92392 1.24938 0.94896 0.94979 0.98908 1.69794 1.36262 1.22553 1.23568 0.86598 0.79126 0.79721 0.82178 1.21181 1.20274 1.20303 1.30539 1.11319 1.12770 1.17053 1.05674 0.75052 0.74697 0.75616 1.93550 1.29701 1.86343 1.85460 1.93551 1.78163 1.38127 1.85789 1.56070 1.60845 1.23637 1.47447 1.21201 0.93437 0.80904 0.99644 0.88747 1.22641 0.98595 1.01079 0.94995 1.22559 0.97225 0.97872 0.98553 1.23732 0.86884 0.87238 0.84875 1.23178 0.98247 0.98163 0.99243 1.89188 1.59885 1.32398 1.47053 1.24447 0.97210 0.83873 1.00808 1.24286 0.93218 0.89544 0.98791 1.88890 1.65026 1.14011 1.60503 0.88690 0.95274 0.94489 0.94507 0.95377 0.88641 0.92693 0.86306 0.86555 0.75586 0.90027 0.89848 0.90202 0.89554 0.88582 0.89677 0.90383 0.87415 0.88056 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 2 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 3 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 4 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.21 9.35 55.43 0.52 -23.70 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.58 -11.38 4.91 37.16 0.18 -11.20 16 13 S 2.59 47.79 4.42 -107.50 -0.48 47.31 16 14 O -0.96 -19.95 15.43 -57.54 -0.89 -20.84 16 15 O -0.97 -20.30 15.70 -57.54 -0.90 -21.20 16 16 N -1.12 -15.23 5.29 -3.86 -0.02 -15.25 16 17 C 0.16 1.95 3.34 -66.72 -0.22 1.73 16 18 H 0.09 1.21 7.21 -51.93 -0.37 0.84 16 19 C -0.13 -1.60 6.60 -25.51 -0.17 -1.77 16 20 C -0.12 -1.28 6.27 -25.42 -0.16 -1.44 16 21 C 0.25 2.65 1.21 -25.57 -0.03 2.62 16 22 C -0.15 -1.58 5.97 -25.42 -0.15 -1.73 16 23 O -0.37 -3.67 11.11 -59.02 -0.66 -4.33 16 24 C 0.01 0.09 7.96 38.20 0.30 0.39 16 25 C 0.02 0.13 8.08 38.20 0.31 0.44 16 26 O -0.36 -3.95 10.99 -59.02 -0.65 -4.60 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 28 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 32 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 35 H 0.12 2.05 7.46 -51.93 -0.39 1.67 16 36 H 0.41 4.67 8.58 -34.47 -0.30 4.37 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.92 7.81 -51.93 -0.41 0.52 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -32.83 364.39 -9.68 -42.50 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.26 Total: 7.39 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 0.19 Total: -28.42 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.50 Total: -38.95 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -3.10 Total: -50.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -0.48 Total: 47.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.83 -9.68 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363976013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.492 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds