Wall clock time and date at job start Tue Mar 31 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 S 1.81403 * 109.47153 * 60.00115 * 12 2 1 14 14 O 1.42100 * 110.54033 * 291.62070 * 13 12 2 15 15 O 1.42093 * 110.54359 * 68.37403 * 13 12 2 16 16 N 1.65606 * 104.44724 * 180.02562 * 13 12 2 17 17 C 1.46492 * 120.00135 * 64.99830 * 16 13 12 18 18 H 1.08997 * 110.01504 * 335.07419 * 17 16 13 19 19 C 1.53929 * 110.02654 * 96.45512 * 17 16 13 20 20 C 1.54404 * 106.63224 * 119.29694 * 19 17 16 21 21 C 1.54108 * 104.14596 * 22.86025 * 20 19 17 22 22 C 1.54106 * 103.65584 * 322.96003 * 21 20 19 23 23 O 1.42888 * 110.70326 * 204.24171 * 21 20 19 24 24 C 1.44990 * 104.55438 * 213.61535 * 23 21 20 25 25 C 1.54983 * 101.85486 * 35.22355 * 24 23 21 26 26 O 1.42516 * 110.91200 * 82.02949 * 21 20 19 27 27 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 32 32 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 36 36 H 0.97001 * 119.99859 * 245.00017 * 16 13 12 37 37 H 1.09003 * 110.02830 * 238.58720 * 19 17 16 38 38 H 1.08997 * 110.02956 * 359.95327 * 19 17 16 39 39 H 1.08997 * 110.50052 * 141.52714 * 20 19 17 40 40 H 1.08998 * 110.49448 * 264.06497 * 20 19 17 41 41 H 1.08998 * 110.49382 * 278.37755 * 22 21 20 42 42 H 1.09003 * 110.49857 * 155.71246 * 22 21 20 43 43 H 1.09001 * 110.95098 * 277.08619 * 24 23 21 44 44 H 1.09001 * 110.95477 * 153.36647 * 24 23 21 45 45 H 1.08997 * 110.69167 * 206.52738 * 25 24 23 46 46 H 1.08999 * 110.68765 * 83.32769 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8269 -0.4200 5.2204 10 1 1.8258 -2.5203 4.0076 11 1 3.8063 -1.1210 4.0081 12 6 2.0400 -0.7212 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0279 -0.0183 -2.8544 15 8 2.0479 1.4101 -2.8544 16 7 2.0530 -0.7407 -3.9937 17 6 1.6232 -2.1251 -4.2055 18 1 1.2777 -2.5563 -3.2659 19 6 0.4966 -2.1729 -5.2533 20 6 1.0175 -3.0355 -6.4232 21 6 2.1189 -3.9062 -5.7878 22 6 2.7909 -2.9602 -4.7738 23 8 3.0570 -4.3351 -6.7766 24 6 3.4716 -5.6534 -6.3380 25 6 2.1635 -6.2095 -5.7204 26 8 1.5562 -5.0389 -5.1309 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7089 1.1613 3.4844 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -1.7488 -1.2493 36 1 2.6993 -0.3364 -4.5934 37 1 -0.3951 -2.6279 -4.8222 38 1 0.2694 -1.1659 -5.6033 39 1 0.2186 -3.6611 -6.8214 40 1 1.4331 -2.4034 -7.2079 41 1 3.5132 -2.3153 -5.2742 42 1 3.2732 -3.5313 -3.9805 43 1 4.2587 -5.5846 -5.5870 44 1 3.7933 -6.2621 -7.1830 45 1 2.3847 -6.9547 -4.9564 46 1 1.5203 -6.6288 -6.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363976013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:13 Heat of formation + Delta-G solvation = -186.403031 kcal Electronic energy + Delta-G solvation = -28519.659320 eV Core-core repulsion = 24535.585223 eV Total energy + Delta-G solvation = -3984.074097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81236 -38.58021 -38.11890 -37.97153 -36.86375 -36.06064 -34.03765 -33.62475 -30.43854 -29.43397 -28.32750 -27.68423 -27.25165 -26.95808 -24.17525 -21.89798 -21.69355 -21.37948 -20.19971 -18.84982 -18.37244 -17.86205 -17.75334 -17.04991 -16.85612 -16.69341 -16.40909 -16.22047 -15.94476 -15.18307 -14.98190 -14.69876 -14.43929 -14.37370 -14.25969 -13.83070 -13.82201 -13.53852 -13.37457 -13.14219 -13.01337 -12.89961 -12.85398 -12.81915 -12.77589 -12.50005 -12.29371 -12.18190 -12.15896 -12.08964 -11.95807 -11.70698 -11.55010 -11.37846 -11.07886 -10.74443 -10.51888 -10.40527 -10.30961 -8.02337 -6.21060 -0.59841 1.45913 1.46007 1.53424 1.88446 2.44766 2.49021 2.84507 2.92523 3.19798 3.33838 3.41436 3.45801 3.73001 3.93887 4.00266 4.09041 4.13346 4.19870 4.33709 4.36214 4.40118 4.49117 4.56266 4.60943 4.67522 4.75029 4.84835 4.86451 4.87502 4.97431 4.99052 4.99803 5.07644 5.09517 5.22849 5.34611 5.40414 5.51593 5.64958 5.98132 6.11637 6.13777 6.19097 6.34812 6.83467 7.47156 8.97385 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003443 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.533782 B = 8130.551987 C = 9212.731428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.288 1.288 10 H -0.272 1.272 11 H -0.272 1.272 12 C -0.588 4.588 13 S 2.613 3.387 14 O -0.986 6.986 15 O -0.993 6.993 16 N -1.105 6.105 17 C 0.147 3.853 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.120 4.120 21 C 0.250 3.750 22 C -0.145 4.145 23 O -0.379 6.379 24 C 0.009 3.991 25 C 0.011 3.989 26 O -0.387 6.387 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.424 0.576 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.119 0.881 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -14.241 -19.010 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.213 1.213 10 H -0.197 1.197 11 H -0.197 1.197 12 C -0.720 4.720 13 S 2.710 3.290 14 O -0.976 6.976 15 O -0.983 6.983 16 N -0.865 5.865 17 C 0.040 3.960 18 H 0.109 0.891 19 C -0.176 4.176 20 C -0.158 4.158 21 C 0.172 3.828 22 C -0.184 4.184 23 O -0.299 6.299 24 C -0.066 4.066 25 C -0.065 4.065 26 O -0.308 6.308 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.150 0.850 45 H 0.137 0.863 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.458 -13.287 -18.889 23.520 hybrid contribution 0.776 -0.551 1.196 1.528 sum 5.234 -13.839 -17.693 23.064 Atomic orbital electron populations 1.22199 0.97667 1.00464 1.01370 1.17913 0.92389 0.92086 0.90871 1.22210 0.99812 0.98449 1.01331 1.21270 1.31717 1.12319 0.90421 0.91880 1.25684 0.95175 0.95650 1.01682 1.69941 1.37164 1.23685 1.23898 0.85671 0.78741 0.78743 0.78817 1.21344 1.19673 1.19691 1.30473 1.12564 1.13343 1.15640 1.04773 0.74329 0.74156 0.75779 1.93516 1.31488 1.86670 1.85878 1.93508 1.78475 1.40064 1.86252 1.55575 1.60933 1.24051 1.45952 1.21410 0.94669 0.80071 0.99885 0.89148 1.22629 0.98297 1.01089 0.95608 1.22532 0.97521 0.97799 0.97975 1.23651 0.86935 0.87331 0.84861 1.23167 0.97586 0.98080 0.99586 1.89167 1.59793 1.33941 1.47030 1.24694 0.97111 0.82763 1.02061 1.24543 0.93456 0.88854 0.99623 1.88867 1.65688 1.15133 1.61111 0.91115 0.94788 0.94161 0.94131 0.94931 0.91033 0.92931 0.84448 0.84760 0.73958 0.90728 0.90452 0.89744 0.88756 0.87475 0.89034 0.89629 0.84986 0.86342 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 2 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 3 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 4 C -0.52 -26.99 8.01 25.60 0.21 -26.79 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.93 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 8 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 9 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 C -0.59 -22.16 4.91 71.98 0.35 -21.81 16 13 S 2.61 93.92 4.42 -56.49 -0.25 93.67 16 14 O -0.99 -40.54 15.43 -127.65 -1.97 -42.51 16 15 O -0.99 -41.00 15.70 -127.65 -2.00 -43.01 16 16 N -1.10 -28.10 5.29 -166.12 -0.88 -28.97 16 17 C 0.15 3.44 3.34 45.78 0.15 3.59 16 18 H 0.09 2.19 7.21 -2.39 -0.02 2.18 16 19 C -0.14 -3.14 6.60 31.38 0.21 -2.93 16 20 C -0.12 -2.28 6.27 31.45 0.20 -2.08 16 21 C 0.25 4.77 1.21 31.34 0.04 4.81 16 22 C -0.14 -2.73 5.97 31.44 0.19 -2.55 16 23 O -0.38 -6.69 11.11 -126.23 -1.40 -8.09 16 24 C 0.01 0.10 7.96 72.66 0.58 0.68 16 25 C 0.01 0.13 8.08 72.66 0.59 0.72 16 26 O -0.39 -7.69 10.99 -126.23 -1.39 -9.07 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 28 H 0.03 1.61 5.46 -2.38 -0.01 1.60 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 32 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 33 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 35 H 0.13 4.52 7.46 -2.39 -0.02 4.50 16 36 H 0.42 8.75 8.58 -96.74 -0.83 7.92 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.85 7.92 -2.39 -0.02 1.83 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.77 7.81 -2.39 -0.02 1.75 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.66 364.39 -1.47 -71.13 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.16 Total: 29.57 kcal Atomic # 6 Polarization: -60.53 SS G_CDS: 4.03 Total: -56.50 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -0.68 Total: -79.30 kcal Atomic # 8 Polarization: -95.92 SS G_CDS: -6.76 Total: -102.68 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 93.92 SS G_CDS: -0.25 Total: 93.67 kcal Total: -69.66 -1.47 -71.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363976013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.271 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds