Wall clock time and date at job start Tue Mar 31 2020 17:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47038 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00529 * 2 1 3 5 5 H 1.07996 * 119.99578 * 241.34529 * 4 2 1 6 6 C 1.37873 * 120.00167 * 61.34358 * 4 2 1 7 7 N 1.31512 * 120.00036 * 193.98224 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 13.97692 * 6 4 2 9 9 H 1.48500 * 109.47129 * 84.54879 * 8 6 4 10 10 H 1.48502 * 109.47305 * 204.55119 * 8 6 4 11 11 H 1.48508 * 109.47126 * 324.55203 * 8 6 4 12 12 C 1.53004 * 109.47305 * 119.99992 * 2 1 3 13 13 N 1.46495 * 109.47050 * 300.00075 * 12 2 1 14 14 C 1.34776 * 119.99900 * 179.97438 * 13 12 2 15 15 O 1.21572 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00159 * 179.97438 * 14 13 12 17 17 C 1.39719 * 120.05937 * 359.97438 * 16 14 13 18 18 C 1.37883 * 120.11660 * 179.97438 * 17 16 14 19 19 C 1.38476 * 120.24663 * 0.02562 * 18 17 16 20 20 F 1.35108 * 119.94213 * 179.97438 * 19 18 17 21 21 C 1.39671 * 120.12000 * 0.23351 * 19 18 17 22 22 C 1.48445 * 120.06215 * 179.74349 * 21 19 18 23 23 N 1.34054 * 126.67565 * 179.69233 * 22 21 19 24 24 N 1.28982 * 107.26868 * 179.83853 * 23 22 21 25 25 N 1.28735 * 108.94544 * 0.42794 * 24 23 22 26 26 H 0.97004 * 125.34129 * 179.74321 * 25 24 23 27 27 N 1.28875 * 109.31848 * 359.72823 * 25 24 23 28 28 C 1.38962 * 119.87356 * 359.49429 * 21 19 18 29 29 H 1.09005 * 109.46711 * 309.36466 * 1 2 3 30 30 H 1.08993 * 109.46945 * 69.36395 * 1 2 3 31 31 H 1.08994 * 109.46795 * 189.36838 * 1 2 3 32 32 H 1.09002 * 109.47038 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47368 * 300.00433 * 3 2 1 34 34 H 1.08999 * 109.46728 * 60.00031 * 3 2 1 35 35 H 0.96995 * 120.00202 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46948 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.46564 * 60.00468 * 12 2 1 38 38 H 0.96998 * 120.00208 * 359.97438 * 13 12 2 39 39 H 1.07999 * 119.94537 * 359.95712 * 17 16 14 40 40 H 1.08007 * 119.87711 * 180.02562 * 18 17 16 41 41 H 1.08003 * 120.11651 * 180.27778 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9157 -0.9724 -3.5460 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5867 -3.9287 11 1 0.1417 1.8043 -1.5157 12 6 2.0401 -0.7213 1.2493 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5752 -1.4804 3.7810 16 6 1.3850 0.2053 4.8758 17 6 0.5829 1.3423 4.7492 18 6 0.1227 1.9932 5.8742 19 6 0.4526 1.5249 7.1349 20 9 -0.0013 2.1677 8.2332 21 6 1.2582 0.3923 7.2733 22 6 1.6157 -0.1052 8.6254 23 7 2.3704 -1.1757 8.9110 24 7 2.4423 -1.2617 10.1959 25 7 1.7613 -0.3019 10.7178 26 1 1.6519 -0.1439 11.6687 27 7 1.2480 0.4163 9.7789 28 6 1.7201 -0.2708 6.1429 29 1 -0.3633 0.6518 0.7946 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0139 0.1673 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6979 -0.6296 -4.4269 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2491 38 1 0.9944 0.7582 2.3564 39 1 0.3232 1.7123 3.7683 40 1 -0.4974 2.8716 5.7718 41 1 2.3395 -1.1496 6.2453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603136202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:04 Heat of formation + Delta-G solvation = 87.899792 kcal Electronic energy + Delta-G solvation = -27583.419678 eV Core-core repulsion = 23416.921490 eV Total energy + Delta-G solvation = -4166.498188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.29936 -44.79980 -40.25357 -38.47691 -36.73320 -34.83255 -34.08225 -33.40676 -31.67558 -31.31173 -30.72380 -26.48847 -26.26913 -25.26257 -25.03631 -24.84208 -23.19226 -22.54467 -20.39817 -19.56873 -19.33150 -18.18594 -17.51496 -17.49761 -16.85560 -16.14153 -15.98856 -15.62798 -15.41239 -15.01400 -14.93507 -14.54647 -14.15894 -13.88022 -13.49702 -13.41191 -13.07140 -12.96446 -12.73962 -12.69088 -12.60874 -12.25839 -12.09217 -11.72547 -11.63554 -11.43452 -11.42619 -11.28575 -10.48719 -10.37395 -10.21723 -10.11390 -9.79150 -9.39370 -9.16958 -9.09260 -8.73138 -8.61603 -8.48478 -6.17352 -4.15012 0.10311 0.54618 0.82137 1.83180 1.86966 2.74616 3.14425 3.20918 3.27613 3.36343 3.39739 3.58561 3.62702 3.84942 4.31522 4.32492 4.54032 4.63778 4.82023 4.90138 5.09463 5.12983 5.29224 5.48353 5.59493 5.68281 5.75826 5.87325 5.98686 6.00299 6.00871 6.26216 6.29416 6.42584 6.46240 6.57778 6.64338 6.67954 6.89609 7.16609 7.38091 7.67988 7.77795 7.78108 8.38270 8.45345 8.88242 9.46111 10.95676 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.002417 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.816221 B =11582.707150 C =12401.939987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.714 5.714 14 C 0.550 3.450 15 O -0.535 6.535 16 C -0.137 4.137 17 C -0.038 4.038 18 C -0.161 4.161 19 C 0.156 3.844 20 F -0.118 7.118 21 C -0.063 4.063 22 C 0.217 3.783 23 N -0.258 5.258 24 N -0.046 5.046 25 N -0.227 5.227 26 H 0.476 0.524 27 N -0.282 5.282 28 C 0.009 3.991 29 H 0.021 0.979 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.028 0.972 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 8.037 25.890 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.365 5.365 14 C 0.336 3.664 15 O -0.413 6.413 16 C -0.141 4.141 17 C -0.058 4.058 18 C -0.180 4.180 19 C 0.134 3.866 20 F -0.096 7.096 21 C -0.067 4.067 22 C -0.062 4.062 23 N -0.131 5.131 24 N -0.042 5.042 25 N -0.073 5.073 26 H 0.331 0.669 27 N -0.134 5.134 28 C -0.012 4.012 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.283 6.884 26.206 27.431 hybrid contribution -0.980 1.939 0.206 2.182 sum -5.262 8.823 26.411 28.339 Atomic orbital electron populations 1.22314 0.97818 0.99936 0.99996 1.18737 0.92535 0.92277 0.93781 1.22379 1.01354 0.98280 0.98554 1.20698 1.34144 1.12376 0.87909 0.90460 1.24978 0.94685 0.97293 0.95804 1.69946 1.48050 1.35892 0.98740 0.87301 0.79325 0.85570 0.76019 1.21345 1.23409 1.17510 1.21595 0.98883 0.95950 0.81680 1.46239 1.52571 1.31718 1.05996 1.17980 0.80998 0.84325 0.83104 1.90805 1.37965 1.25860 1.86658 1.20104 1.01975 0.97782 0.94213 1.21424 0.92658 0.92484 0.99193 1.21021 1.04143 1.02933 0.89869 1.17782 0.94523 0.90689 0.83620 1.91582 1.86389 1.79883 1.51720 1.17111 1.04214 0.97600 0.87811 1.23315 0.97565 0.92448 0.92909 1.76161 1.16984 1.16565 1.03430 1.78950 1.12237 1.09838 1.03128 1.47785 1.31000 1.16602 1.11959 0.66940 1.75095 1.20932 1.20647 0.96714 1.21215 0.93735 0.97637 0.88630 0.96021 0.92436 0.93258 0.92645 0.93966 0.95260 0.92525 0.91572 0.91469 0.76865 0.83794 0.83133 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.53 37.16 0.28 -2.46 16 2 C 0.03 0.58 0.50 -155.65 -0.08 0.50 16 3 C -0.15 -2.83 7.52 37.16 0.28 -2.56 16 4 C -0.51 -13.34 8.62 -34.44 -0.30 -13.64 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.04 5.32 -17.82 -0.09 1.94 16 7 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 8 Si 0.89 20.42 22.79 -169.99 -3.87 16.55 16 9 H -0.29 -6.59 7.10 56.52 0.40 -6.19 16 10 H -0.31 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.25 -5.14 4.65 56.52 0.26 -4.88 16 12 C 0.14 2.66 4.49 -4.04 -0.02 2.64 16 13 N -0.71 -10.74 4.95 -61.28 -0.30 -11.05 16 14 C 0.55 8.44 7.77 -12.38 -0.10 8.34 16 15 O -0.53 -10.22 16.34 5.30 0.09 -10.13 16 16 C -0.14 -1.62 5.87 -105.01 -0.62 -2.24 16 17 C -0.04 -0.34 9.53 -39.16 -0.37 -0.71 16 18 C -0.16 -1.28 10.00 -39.62 -0.40 -1.67 16 19 C 0.16 1.52 7.28 -38.96 -0.28 1.24 16 20 F -0.12 -1.19 15.81 2.25 0.04 -1.16 16 21 C -0.06 -0.70 5.88 -104.89 -0.62 -1.31 16 22 C 0.22 2.51 7.92 -156.30 -1.24 1.27 16 23 N -0.26 -3.17 12.23 32.15 0.39 -2.78 16 24 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 25 N -0.23 -1.61 7.90 60.35 0.48 -1.14 16 26 H 0.48 0.94 8.96 -340.35 -3.05 -2.11 16 27 N -0.28 -2.79 11.08 32.17 0.36 -2.44 16 28 C 0.01 0.10 9.24 -38.87 -0.36 -0.25 16 29 H 0.02 0.33 7.13 -51.93 -0.37 -0.04 16 30 H 0.06 1.19 4.30 -51.93 -0.22 0.96 16 31 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.86 2.25 -51.93 -0.12 0.74 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.40 4.92 4.28 -40.82 -0.17 4.74 16 39 H 0.14 0.98 6.39 -52.49 -0.34 0.64 16 40 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.16 2.06 7.47 -52.48 -0.39 1.66 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -33.15 339.39 -6.86 -40.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.82 Total: 0.91 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.91 Total: -8.91 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 2.51 Total: -42.38 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -3.87 Total: 16.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.15 -6.86 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.907 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds