Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47038 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00529 * 2 1 3 5 5 H 1.07996 * 119.99578 * 241.34529 * 4 2 1 6 6 C 1.37873 * 120.00167 * 61.34358 * 4 2 1 7 7 N 1.31512 * 120.00036 * 193.98224 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 13.97692 * 6 4 2 9 9 H 1.48500 * 109.47129 * 84.54879 * 8 6 4 10 10 H 1.48502 * 109.47305 * 204.55119 * 8 6 4 11 11 H 1.48508 * 109.47126 * 324.55203 * 8 6 4 12 12 C 1.53004 * 109.47305 * 119.99992 * 2 1 3 13 13 N 1.46495 * 109.47050 * 300.00075 * 12 2 1 14 14 C 1.34776 * 119.99900 * 179.97438 * 13 12 2 15 15 O 1.21572 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.47744 * 120.00159 * 179.97438 * 14 13 12 17 17 C 1.39719 * 120.05937 * 359.97438 * 16 14 13 18 18 C 1.37883 * 120.11660 * 179.97438 * 17 16 14 19 19 C 1.38476 * 120.24663 * 0.02562 * 18 17 16 20 20 F 1.35108 * 119.94213 * 179.97438 * 19 18 17 21 21 C 1.39671 * 120.12000 * 0.23351 * 19 18 17 22 22 C 1.48445 * 120.06215 * 179.74349 * 21 19 18 23 23 N 1.34054 * 126.67565 * 179.69233 * 22 21 19 24 24 N 1.28982 * 107.26868 * 179.83853 * 23 22 21 25 25 N 1.28735 * 108.94544 * 0.42794 * 24 23 22 26 26 H 0.97004 * 125.34129 * 179.74321 * 25 24 23 27 27 N 1.28875 * 109.31848 * 359.72823 * 25 24 23 28 28 C 1.38962 * 119.87356 * 359.49429 * 21 19 18 29 29 H 1.09005 * 109.46711 * 309.36466 * 1 2 3 30 30 H 1.08993 * 109.46945 * 69.36395 * 1 2 3 31 31 H 1.08994 * 109.46795 * 189.36838 * 1 2 3 32 32 H 1.09002 * 109.47038 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47368 * 300.00433 * 3 2 1 34 34 H 1.08999 * 109.46728 * 60.00031 * 3 2 1 35 35 H 0.96995 * 120.00202 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46948 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.46564 * 60.00468 * 12 2 1 38 38 H 0.96998 * 120.00208 * 359.97438 * 13 12 2 39 39 H 1.07999 * 119.94537 * 359.95712 * 17 16 14 40 40 H 1.08007 * 119.87711 * 180.02562 * 18 17 16 41 41 H 1.08003 * 120.11651 * 180.27778 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9157 -0.9724 -3.5460 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5867 -3.9287 11 1 0.1417 1.8043 -1.5157 12 6 2.0401 -0.7213 1.2493 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5752 -1.4804 3.7810 16 6 1.3850 0.2053 4.8758 17 6 0.5829 1.3423 4.7492 18 6 0.1227 1.9932 5.8742 19 6 0.4526 1.5249 7.1349 20 9 -0.0013 2.1677 8.2332 21 6 1.2582 0.3923 7.2733 22 6 1.6157 -0.1052 8.6254 23 7 2.3704 -1.1757 8.9110 24 7 2.4423 -1.2617 10.1959 25 7 1.7613 -0.3019 10.7178 26 1 1.6519 -0.1439 11.6687 27 7 1.2480 0.4163 9.7789 28 6 1.7201 -0.2708 6.1429 29 1 -0.3633 0.6518 0.7946 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0139 0.1673 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6979 -0.6296 -4.4269 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2491 38 1 0.9944 0.7582 2.3564 39 1 0.3232 1.7123 3.7683 40 1 -0.4974 2.8716 5.7718 41 1 2.3395 -1.1496 6.2453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603136202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = 62.891146 kcal Electronic energy + Delta-G solvation = -27584.504135 eV Core-core repulsion = 23416.921490 eV Total energy + Delta-G solvation = -4167.582645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.04990 -45.55956 -41.33739 -39.53972 -38.27085 -35.62601 -35.12683 -34.69213 -33.46531 -32.09225 -31.66524 -27.97839 -27.68595 -26.94595 -25.98439 -25.71224 -24.25034 -23.31601 -21.51645 -20.95308 -20.32611 -19.12561 -18.52393 -18.27108 -17.98486 -17.69543 -17.06243 -16.74994 -16.52958 -16.32030 -16.27743 -15.33123 -15.19059 -14.94160 -14.87783 -14.66982 -14.36403 -14.24936 -13.97715 -13.89154 -13.69753 -13.60881 -13.45750 -12.89261 -12.50210 -12.40274 -12.34596 -12.22409 -12.11383 -12.10905 -11.90233 -11.70843 -11.15296 -10.96364 -10.57718 -10.34002 -10.17483 -10.07158 -9.77534 -8.25810 -6.27748 -0.66936 -0.26438 0.06860 1.02827 1.32402 1.40470 1.42688 1.55894 1.76160 2.13563 2.39441 2.47588 2.62932 2.85856 3.06096 3.10661 3.59693 3.68010 3.81518 4.05016 4.08813 4.13005 4.32695 4.38070 4.46239 4.56519 4.76999 4.81191 4.85256 4.87932 4.92247 4.95229 5.01394 5.09609 5.12584 5.22251 5.43935 5.51711 5.56212 5.58987 5.76536 5.86079 6.34240 6.60080 6.77426 7.00641 7.24128 7.37155 8.91436 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.002417 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.816221 B =11582.707150 C =12401.939987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.517 4.517 5 H 0.025 0.975 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.283 1.283 10 H -0.319 1.319 11 H -0.195 1.195 12 C 0.156 3.844 13 N -0.700 5.700 14 C 0.553 3.447 15 O -0.583 6.583 16 C -0.148 4.148 17 C -0.021 4.021 18 C -0.141 4.141 19 C 0.158 3.842 20 F -0.118 7.118 21 C -0.073 4.073 22 C 0.204 3.796 23 N -0.293 5.293 24 N -0.053 5.053 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.283 5.283 28 C 0.000 4.000 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.263 0.737 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.413 0.587 39 H 0.177 0.823 40 H 0.190 0.810 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 12.191 28.342 31.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 C -0.206 4.206 4 C -0.555 4.555 5 H 0.044 0.956 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.249 1.249 11 H -0.119 1.119 12 C 0.032 3.968 13 N -0.352 5.352 14 C 0.341 3.659 15 O -0.464 6.464 16 C -0.152 4.152 17 C -0.041 4.041 18 C -0.159 4.159 19 C 0.136 3.864 20 F -0.096 7.096 21 C -0.077 4.077 22 C -0.076 4.076 23 N -0.165 5.165 24 N -0.048 5.048 25 N -0.048 5.048 26 H 0.356 0.644 27 N -0.136 5.136 28 C -0.021 4.021 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.194 0.806 40 H 0.207 0.793 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.902 11.064 28.731 31.552 hybrid contribution -0.113 0.535 -0.389 0.672 sum -7.015 11.600 28.342 31.417 Atomic orbital electron populations 1.22249 0.95798 1.00862 1.01178 1.18673 0.93993 0.93221 0.91534 1.22324 1.01085 0.96628 1.00592 1.21047 1.32793 1.11032 0.90662 0.95629 1.25920 0.95492 1.01834 0.95204 1.70125 1.50861 1.38411 0.99419 0.86339 0.79452 0.79645 0.77117 1.21012 1.24906 1.11872 1.21097 0.97613 0.95140 0.82941 1.45888 1.52708 1.31971 1.04661 1.18481 0.79884 0.83645 0.83927 1.90790 1.40118 1.28164 1.87327 1.19750 1.04051 0.99338 0.92033 1.21697 0.90717 0.90596 1.01048 1.21380 1.03041 1.03235 0.88228 1.17963 0.93913 0.90047 0.84442 1.91584 1.86269 1.79721 1.52064 1.17138 1.04931 0.98342 0.87270 1.23503 0.97904 0.92574 0.93645 1.76153 1.18275 1.17672 1.04402 1.78884 1.12742 1.10493 1.02657 1.47842 1.29066 1.15128 1.12756 0.64446 1.75045 1.21072 1.20847 0.96636 1.21005 0.94216 0.97487 0.89378 0.90844 0.93620 0.94093 0.93538 0.94658 0.90098 0.92794 0.93639 0.93844 0.74739 0.80603 0.79253 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 7.53 71.98 0.54 -4.42 16 2 C 0.03 1.07 0.50 -52.92 -0.03 1.04 16 3 C -0.15 -5.10 7.52 71.98 0.54 -4.55 16 4 C -0.52 -27.76 8.62 25.60 0.22 -27.54 16 5 H 0.03 1.58 7.99 -2.91 -0.02 1.55 16 6 C 0.01 0.70 5.32 84.65 0.45 1.15 16 7 N -0.95 -58.29 13.96 21.45 0.30 -58.00 16 8 Si 0.95 41.06 22.79 68.60 1.56 42.62 16 9 H -0.28 -12.07 7.10 99.48 0.71 -11.37 16 10 H -0.32 -14.53 7.11 99.48 0.71 -13.82 16 11 H -0.20 -6.85 4.65 99.48 0.46 -6.38 16 12 C 0.16 5.85 4.49 86.38 0.39 6.24 16 13 N -0.70 -19.20 4.95 -466.07 -2.31 -21.51 16 14 C 0.55 16.35 7.77 86.76 0.67 17.02 16 15 O -0.58 -23.00 16.34 -3.94 -0.06 -23.06 16 16 C -0.15 -3.17 5.87 -20.12 -0.12 -3.29 16 17 C -0.02 -0.27 9.53 22.54 0.21 -0.05 16 18 C -0.14 -1.46 10.00 22.24 0.22 -1.24 16 19 C 0.16 2.55 7.28 22.67 0.17 2.72 16 20 F -0.12 -2.00 15.81 44.97 0.71 -1.29 16 21 C -0.07 -1.51 5.88 -20.04 -0.12 -1.62 16 22 C 0.20 4.56 7.92 137.37 1.09 5.65 16 23 N -0.29 -7.26 12.23 -52.18 -0.64 -7.89 16 24 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 25 N -0.20 -2.50 7.90 37.02 0.29 -2.21 16 26 H 0.50 0.98 8.96 -347.52 -3.12 -2.14 16 27 N -0.28 -5.16 11.08 -52.13 -0.58 -5.74 16 28 C 0.00 0.01 9.24 22.73 0.21 0.22 16 29 H 0.07 1.78 7.13 -2.38 -0.02 1.77 16 30 H 0.04 1.69 4.30 -2.39 -0.01 1.68 16 31 H 0.04 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.27 2.25 -2.39 -0.01 1.26 16 34 H 0.08 1.92 6.86 -2.39 -0.02 1.90 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 8.00 4.28 -92.71 -0.40 7.60 16 39 H 0.18 1.07 6.39 -2.91 -0.02 1.05 16 40 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.14 3.79 7.47 -2.91 -0.02 3.77 16 Total: -1.00 -79.20 339.39 1.61 -77.59 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.62 Total: 8.70 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.45 Total: -8.68 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -2.43 Total: -95.88 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.71 Total: -1.29 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.56 Total: 42.62 kcal Total: -79.20 1.61 -77.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.479 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds