Wall clock time and date at job start Tue Mar 31 2020 18:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.44168 * 2 1 4 4 O 1.42988 * 109.44440 * 119.93509 * 2 1 3 5 5 C 1.35971 * 116.72304 * 166.48509 * 4 2 1 6 6 C 1.38391 * 120.68193 * 147.09353 * 5 4 2 7 7 C 1.38308 * 119.87385 * 180.02562 * 6 5 4 8 8 C 1.38277 * 120.25952 * 0.03366 * 7 6 5 9 9 C 1.38283 * 120.20169 * 359.96804 * 8 7 6 10 10 C 1.38512 * 119.81323 * 0.02562 * 9 8 7 11 11 N 1.40213 * 120.74624 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.50752 * 15.43465 * 11 10 9 13 13 C 1.52990 * 109.47547 * 270.02107 * 12 11 10 14 14 C 1.50701 * 109.47444 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99652 * 0.02562 * 14 13 12 16 16 O 1.34228 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.45209 * 116.99765 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47077 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47236 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00210 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47229 * 120.00053 * 23 21 19 26 26 H 1.48501 * 109.46979 * 240.00165 * 23 21 19 27 27 C 1.35094 * 118.98060 * 195.45944 * 11 10 9 28 28 O 1.21296 * 120.12728 * 181.64657 * 27 11 10 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99905 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99734 * 1 2 3 32 32 H 1.08008 * 120.06514 * 0.07843 * 6 5 4 33 33 H 1.08006 * 119.87253 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.90106 * 179.97438 * 8 7 6 35 35 H 1.07993 * 120.09772 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47330 * 30.02737 * 12 11 10 37 37 H 1.09006 * 109.47062 * 150.01884 * 12 11 10 38 38 H 1.09005 * 109.47564 * 300.00168 * 13 12 11 39 39 H 1.09006 * 109.47121 * 59.99814 * 13 12 11 40 40 H 1.08999 * 109.46718 * 299.99920 * 17 16 14 41 41 H 1.08992 * 109.46909 * 60.00185 * 17 16 14 42 42 H 1.09007 * 109.47164 * 299.99673 * 18 17 16 43 43 H 1.08995 * 109.47678 * 59.99674 * 18 17 16 44 44 H 0.97000 * 119.99718 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0061 -0.6728 1.1684 5 6 3.3231 -1.0103 1.1858 6 6 4.0347 -1.0173 2.3727 7 6 5.3740 -1.3628 2.3710 8 6 6.0049 -1.7007 1.1878 9 6 5.3005 -1.6961 -0.0021 10 6 3.9590 -1.3511 -0.0069 11 7 3.2259 -1.3404 -1.2021 12 6 3.7467 -2.0037 -2.4000 13 6 4.5850 -1.0118 -3.2086 14 6 5.1213 -1.6943 -4.4405 15 8 4.8593 -2.8550 -4.6504 16 8 5.8890 -1.0125 -5.3050 17 6 6.3700 -1.7336 -6.4700 18 6 7.2220 -0.7999 -7.3319 19 6 7.7216 -1.5484 -8.5407 20 1 7.4575 -2.5862 -8.6804 21 6 8.5151 -0.9080 -9.4688 22 7 8.8363 0.3560 -9.2989 23 14 9.1338 -1.8356 -10.9675 24 1 8.6356 -3.2340 -10.9245 25 1 8.6394 -1.1711 -12.2000 26 1 10.6188 -1.8396 -10.9689 27 6 2.0322 -0.7085 -1.2321 28 8 1.3669 -0.7118 -2.2464 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.5451 -0.7542 3.2988 33 1 5.9292 -1.3686 3.2973 34 1 7.0509 -1.9692 1.1931 35 1 5.7948 -1.9606 -0.9251 36 1 4.3681 -2.8495 -2.1058 37 1 2.9154 -2.3583 -3.0094 38 1 3.9636 -0.1659 -3.5028 39 1 5.4163 -0.6572 -2.5991 40 1 6.9737 -2.5822 -6.1483 41 1 5.5207 -2.0916 -7.0518 42 1 6.6186 0.0491 -7.6536 43 1 8.0713 -0.4421 -6.7499 44 1 9.3942 0.8066 -9.9520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037132685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:53 Heat of formation + Delta-G solvation = -133.394984 kcal Electronic energy + Delta-G solvation = -27854.673470 eV Core-core repulsion = 23737.454023 eV Total energy + Delta-G solvation = -4117.219447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04032 -40.09158 -39.29310 -38.19300 -36.57718 -35.98718 -33.39002 -32.58335 -32.21321 -30.66876 -30.29934 -29.25950 -26.49406 -24.95901 -23.74225 -23.73865 -22.55248 -21.11793 -20.42450 -19.81624 -19.59239 -17.97125 -17.48011 -17.12434 -16.38108 -16.29333 -15.98979 -15.85927 -15.64289 -15.11147 -14.99688 -14.73215 -14.66111 -14.42190 -13.96551 -13.62813 -13.44122 -12.97334 -12.87454 -12.73254 -12.59873 -12.52629 -12.36612 -12.29950 -11.61815 -11.56725 -11.46474 -11.26722 -11.07290 -10.81746 -10.80695 -10.72409 -10.35002 -10.24316 -9.70108 -9.66254 -9.31442 -9.08840 -8.47480 -8.26931 -6.13188 -4.17641 0.66651 0.84762 1.88008 2.05169 2.44845 2.75083 3.15669 3.25787 3.29869 3.33499 3.38680 3.53228 4.21580 4.28473 4.36797 4.42257 4.52145 4.56968 4.64709 4.75589 4.86539 4.98784 5.05185 5.14367 5.22378 5.23550 5.29041 5.33517 5.40629 5.52085 5.63948 5.66772 5.77524 5.96266 6.03719 6.05163 6.07118 6.22804 6.49342 6.59183 6.91135 6.93044 7.34275 7.52134 7.58444 7.83079 8.09857 8.21342 8.88141 9.47008 10.98387 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.002153 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.533760 B =13001.425763 C =13902.489565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.105 0.895 4 O -0.302 6.302 5 C 0.077 3.923 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.107 4.107 9 C -0.124 4.124 10 C 0.097 3.903 11 N -0.550 5.550 12 C 0.121 3.879 13 C -0.135 4.135 14 C 0.463 3.537 15 O -0.518 6.518 16 O -0.355 6.355 17 C 0.075 3.925 18 C 0.024 3.976 19 C -0.526 4.526 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.488 3.512 28 O -0.496 6.496 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -0.119 27.692 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 H 0.122 0.878 4 O -0.217 6.217 5 C 0.031 3.969 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.126 4.126 9 C -0.144 4.144 10 C 0.002 3.998 11 N -0.274 5.274 12 C 0.000 4.000 13 C -0.174 4.174 14 C 0.305 3.695 15 O -0.407 6.407 16 O -0.271 6.271 17 C 0.003 3.997 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.276 3.724 28 O -0.369 6.369 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.196 -0.351 26.988 29.617 hybrid contribution 0.644 -0.475 -1.198 1.441 sum -11.552 -0.826 25.789 28.270 Atomic orbital electron populations 1.21723 0.88808 1.04479 1.04196 1.22666 0.98143 0.96239 0.80944 0.87762 1.86233 1.21543 1.74220 1.39719 1.18599 0.83566 1.01987 0.92757 1.20532 0.93568 1.02329 0.96323 1.21023 0.93675 0.99700 0.98684 1.21054 1.00393 0.99600 0.91569 1.20825 0.91218 1.02426 0.99933 1.18165 0.92818 1.03968 0.84816 1.45769 1.19058 1.52427 1.10195 1.21459 0.99799 0.94136 0.84592 1.21700 1.01711 1.00512 0.93462 1.23107 0.76336 0.85526 0.84536 1.90649 1.56568 1.17946 1.75582 1.86527 1.60512 1.45621 1.34469 1.23683 0.97893 0.96268 0.81897 1.19181 0.94331 0.94783 0.93030 1.21012 1.31706 0.97681 1.06033 0.92182 1.24992 0.95916 0.94948 0.98341 1.69984 1.36838 1.10004 1.36009 0.86409 0.78567 0.79984 0.82324 1.19576 1.20799 1.20806 1.21608 0.80462 0.79272 0.91036 1.90789 1.55114 1.57865 1.33146 0.91014 0.90124 0.88864 0.84400 0.84835 0.84842 0.84662 0.88285 0.87598 0.87279 0.87432 0.92189 0.92190 0.95340 0.95341 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.15 37.16 0.34 -0.59 16 2 C 0.08 0.68 3.68 -27.86 -0.10 0.58 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 4 O -0.30 -2.83 10.09 -19.65 -0.20 -3.03 16 5 C 0.08 0.71 6.44 -39.09 -0.25 0.46 16 6 C -0.11 -0.77 10.00 -39.50 -0.39 -1.17 16 7 C -0.11 -0.68 10.04 -39.54 -0.40 -1.08 16 8 C -0.11 -0.73 10.04 -39.55 -0.40 -1.13 16 9 C -0.12 -1.05 8.94 -39.46 -0.35 -1.40 16 10 C 0.10 0.95 6.38 -83.49 -0.53 0.42 16 11 N -0.55 -6.07 2.72 -113.22 -0.31 -6.38 16 12 C 0.12 1.42 4.06 -4.05 -0.02 1.41 16 13 C -0.14 -1.66 5.99 -27.89 -0.17 -1.83 16 14 C 0.46 7.81 7.96 36.01 0.29 8.09 16 15 O -0.52 -9.84 15.73 -18.75 -0.29 -10.14 16 16 O -0.36 -7.04 10.22 -39.25 -0.40 -7.44 16 17 C 0.07 1.67 5.40 37.15 0.20 1.87 16 18 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 19 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.49 5.63 7.38 -10.82 -0.08 5.55 16 28 O -0.50 -7.04 15.80 5.54 0.09 -6.95 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.64 7.86 -51.93 -0.41 0.23 16 32 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.09 5.99 -52.49 -0.31 0.78 16 36 H 0.10 1.07 7.02 -51.93 -0.36 0.71 16 37 H 0.11 1.42 7.41 -51.93 -0.38 1.04 16 38 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.11 1.10 7.19 -51.93 -0.37 0.73 16 40 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 41 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -33.49 374.89 -8.21 -41.70 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.04 Total: -2.30 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.43 Total: -1.85 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.43 Total: -32.02 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.81 Total: -27.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.49 -8.21 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037132685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.698 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds