Wall clock time and date at job start Tue Mar 31 2020 18:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.44168 * 2 1 4 4 O 1.42988 * 109.44440 * 119.93509 * 2 1 3 5 5 C 1.35971 * 116.72304 * 166.48509 * 4 2 1 6 6 C 1.38391 * 120.68193 * 147.09353 * 5 4 2 7 7 C 1.38308 * 119.87385 * 180.02562 * 6 5 4 8 8 C 1.38277 * 120.25952 * 0.03366 * 7 6 5 9 9 C 1.38283 * 120.20169 * 359.96804 * 8 7 6 10 10 C 1.38512 * 119.81323 * 0.02562 * 9 8 7 11 11 N 1.40213 * 120.74624 * 180.02562 * 10 9 8 12 12 C 1.46495 * 120.50752 * 15.43465 * 11 10 9 13 13 C 1.52990 * 109.47547 * 270.02107 * 12 11 10 14 14 C 1.50701 * 109.47444 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99652 * 0.02562 * 14 13 12 16 16 O 1.34228 * 119.99917 * 179.97438 * 14 13 12 17 17 C 1.45209 * 116.99765 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47077 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47236 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00210 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47229 * 120.00053 * 23 21 19 26 26 H 1.48501 * 109.46979 * 240.00165 * 23 21 19 27 27 C 1.35094 * 118.98060 * 195.45944 * 11 10 9 28 28 O 1.21296 * 120.12728 * 181.64657 * 27 11 10 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99905 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99734 * 1 2 3 32 32 H 1.08008 * 120.06514 * 0.07843 * 6 5 4 33 33 H 1.08006 * 119.87253 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.90106 * 179.97438 * 8 7 6 35 35 H 1.07993 * 120.09772 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47330 * 30.02737 * 12 11 10 37 37 H 1.09006 * 109.47062 * 150.01884 * 12 11 10 38 38 H 1.09005 * 109.47564 * 300.00168 * 13 12 11 39 39 H 1.09006 * 109.47121 * 59.99814 * 13 12 11 40 40 H 1.08999 * 109.46718 * 299.99920 * 17 16 14 41 41 H 1.08992 * 109.46909 * 60.00185 * 17 16 14 42 42 H 1.09007 * 109.47164 * 299.99673 * 18 17 16 43 43 H 1.08995 * 109.47678 * 59.99674 * 18 17 16 44 44 H 0.97000 * 119.99718 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 8 2.0061 -0.6728 1.1684 5 6 3.3231 -1.0103 1.1858 6 6 4.0347 -1.0173 2.3727 7 6 5.3740 -1.3628 2.3710 8 6 6.0049 -1.7007 1.1878 9 6 5.3005 -1.6961 -0.0021 10 6 3.9590 -1.3511 -0.0069 11 7 3.2259 -1.3404 -1.2021 12 6 3.7467 -2.0037 -2.4000 13 6 4.5850 -1.0118 -3.2086 14 6 5.1213 -1.6943 -4.4405 15 8 4.8593 -2.8550 -4.6504 16 8 5.8890 -1.0125 -5.3050 17 6 6.3700 -1.7336 -6.4700 18 6 7.2220 -0.7999 -7.3319 19 6 7.7216 -1.5484 -8.5407 20 1 7.4575 -2.5862 -8.6804 21 6 8.5151 -0.9080 -9.4688 22 7 8.8363 0.3560 -9.2989 23 14 9.1338 -1.8356 -10.9675 24 1 8.6356 -3.2340 -10.9245 25 1 8.6394 -1.1711 -12.2000 26 1 10.6188 -1.8396 -10.9689 27 6 2.0322 -0.7085 -1.2321 28 8 1.3669 -0.7118 -2.2464 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.5451 -0.7542 3.2988 33 1 5.9292 -1.3686 3.2973 34 1 7.0509 -1.9692 1.1931 35 1 5.7948 -1.9606 -0.9251 36 1 4.3681 -2.8495 -2.1058 37 1 2.9154 -2.3583 -3.0094 38 1 3.9636 -0.1659 -3.5028 39 1 5.4163 -0.6572 -2.5991 40 1 6.9737 -2.5822 -6.1483 41 1 5.5207 -2.0916 -7.0518 42 1 6.6186 0.0491 -7.6536 43 1 8.0713 -0.4421 -6.7499 44 1 9.3942 0.8066 -9.9520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037132685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:52 Heat of formation + Delta-G solvation = -152.406642 kcal Electronic energy + Delta-G solvation = -27855.497877 eV Core-core repulsion = 23737.454023 eV Total energy + Delta-G solvation = -4118.043855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.78980 -41.55329 -40.07168 -38.89986 -37.92929 -37.02069 -35.48509 -33.40177 -33.10394 -32.23697 -31.26886 -29.94631 -27.71588 -26.62915 -24.62797 -24.37704 -23.37766 -22.91667 -21.83563 -20.53027 -20.30716 -19.21338 -18.51294 -18.19857 -17.88654 -17.82846 -17.39111 -16.64040 -16.49985 -16.47312 -15.96163 -15.85390 -15.49215 -15.46033 -14.99771 -14.54163 -14.39115 -14.33292 -14.12701 -14.08935 -13.57547 -13.32850 -13.17296 -13.15012 -13.03893 -12.85101 -12.64582 -12.59837 -12.48696 -12.22174 -12.13738 -11.94313 -11.66585 -11.53071 -11.50824 -11.35929 -11.08369 -10.64399 -9.68218 -8.96253 -8.29687 -6.42983 0.02373 0.27666 1.04067 1.06583 1.20183 1.39942 1.40319 1.53948 1.77702 2.15645 2.38427 2.71597 2.81063 3.04880 3.42525 3.56744 3.61262 3.72510 3.74698 3.86340 4.01268 4.15070 4.18052 4.22084 4.25605 4.31575 4.36499 4.49147 4.61553 4.65228 4.66440 4.72611 4.79305 4.95500 5.11225 5.21463 5.24749 5.27731 5.42811 5.48763 5.53818 5.69131 5.70852 5.77568 6.03333 6.25618 6.50011 6.60678 6.71172 7.27038 8.83220 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.002153 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.533760 B =13001.425763 C =13902.489565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.082 3.918 3 H 0.124 0.876 4 O -0.307 6.307 5 C 0.061 3.939 6 C -0.109 4.109 7 C -0.102 4.102 8 C -0.109 4.109 9 C -0.133 4.133 10 C 0.072 3.928 11 N -0.550 5.550 12 C 0.127 3.873 13 C -0.119 4.119 14 C 0.464 3.536 15 O -0.538 6.538 16 O -0.365 6.365 17 C 0.090 3.910 18 C 0.030 3.970 19 C -0.550 4.550 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.927 5.927 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.274 1.274 27 C 0.480 3.520 28 O -0.534 6.534 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.004 0.996 43 H 0.009 0.991 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.963 -0.483 29.536 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 H 0.142 0.858 4 O -0.223 6.223 5 C 0.015 3.985 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.153 4.153 10 C -0.021 4.021 11 N -0.274 5.274 12 C 0.006 3.994 13 C -0.158 4.158 14 C 0.308 3.692 15 O -0.429 6.429 16 O -0.281 6.281 17 C 0.017 3.983 18 C -0.007 4.007 19 C -0.587 4.587 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.566 5.566 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.199 1.199 27 C 0.270 3.730 28 O -0.410 6.410 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.027 0.973 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.495 -0.722 28.881 31.093 hybrid contribution 0.450 -0.354 -1.621 1.719 sum -11.045 -1.076 27.261 29.433 Atomic orbital electron populations 1.21740 0.87712 1.04110 1.05263 1.22808 0.98943 0.96544 0.79440 0.85828 1.86220 1.21923 1.74509 1.39609 1.18909 0.83644 1.02674 0.93300 1.20870 0.94018 1.01586 0.96269 1.21424 0.93336 0.97637 0.99631 1.21380 1.01370 0.98816 0.91162 1.20977 0.90883 1.02594 1.00839 1.18370 0.93435 1.05908 0.84414 1.45753 1.19158 1.52144 1.10341 1.21281 0.98966 0.94315 0.84887 1.21714 1.02437 1.00155 0.91449 1.23898 0.75163 0.85369 0.84764 1.90639 1.57110 1.19048 1.76054 1.86515 1.61454 1.45861 1.34258 1.23201 0.97330 0.95218 0.82568 1.18993 0.93824 0.94640 0.93284 1.21397 1.32196 0.98160 1.06984 0.91681 1.25975 0.95893 0.95840 1.01635 1.70100 1.37462 1.11668 1.37380 0.85263 0.78158 0.78801 0.78003 1.18637 1.20115 1.19900 1.22254 0.80252 0.78944 0.91580 1.90763 1.56152 1.59425 1.34642 0.92112 0.87754 0.89009 0.82460 0.81766 0.82759 0.84688 0.87461 0.89750 0.86962 0.84813 0.91683 0.92345 0.97724 0.97278 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.15 71.98 0.66 -1.07 16 2 C 0.08 1.35 3.68 29.86 0.11 1.46 16 3 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 4 O -0.31 -5.39 10.09 -93.22 -0.94 -6.33 16 5 C 0.06 1.03 6.44 22.58 0.15 1.18 16 6 C -0.11 -1.25 10.00 22.32 0.22 -1.03 16 7 C -0.10 -0.89 10.04 22.30 0.22 -0.67 16 8 C -0.11 -1.18 10.04 22.29 0.22 -0.96 16 9 C -0.13 -2.05 8.94 22.35 0.20 -1.85 16 10 C 0.07 1.35 6.38 38.14 0.24 1.59 16 11 N -0.55 -12.11 2.72 -630.32 -1.71 -13.82 16 12 C 0.13 3.02 4.06 86.38 0.35 3.37 16 13 C -0.12 -2.89 5.99 29.84 0.18 -2.71 16 14 C 0.46 15.69 7.96 71.24 0.57 16.25 16 15 O -0.54 -20.59 15.73 21.98 0.35 -20.25 16 16 O -0.36 -14.59 10.22 -51.40 -0.53 -15.12 16 17 C 0.09 4.06 5.40 71.98 0.39 4.45 16 18 C 0.03 1.61 5.35 29.85 0.16 1.77 16 19 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 20 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 21 C 0.01 0.32 5.46 84.66 0.46 0.78 16 22 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 23 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.48 11.23 7.38 87.62 0.65 11.87 16 28 O -0.53 -15.75 15.80 -3.08 -0.05 -15.80 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.24 7.86 -2.39 -0.02 1.22 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 33 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.14 2.01 5.99 -2.91 -0.02 1.99 16 36 H 0.11 2.32 7.02 -2.39 -0.02 2.31 16 37 H 0.08 2.37 7.41 -2.38 -0.02 2.36 16 38 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 39 H 0.13 2.57 7.19 -2.38 -0.02 2.55 16 40 H 0.06 2.85 8.13 -2.39 -0.02 2.83 16 41 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 42 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -73.25 374.89 5.46 -67.80 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.01 Total: 9.73 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.01 Total: 3.38 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.43 Total: -69.14 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -1.17 Total: -57.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.25 5.46 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037132685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.610 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds