Wall clock time and date at job start Tue Mar 31 2020 18:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.44212 * 2 1 4 4 O 1.43003 * 109.44146 * 240.07032 * 2 1 3 5 5 C 1.35982 * 116.71619 * 286.37420 * 4 2 1 6 6 C 1.38391 * 120.66719 * 147.15760 * 5 4 2 7 7 C 1.38309 * 119.87682 * 180.10218 * 6 5 4 8 8 C 1.38278 * 120.25910 * 359.97438 * 7 6 5 9 9 C 1.38288 * 120.20041 * 359.96937 * 8 7 6 10 10 C 1.38515 * 119.80927 * 0.03161 * 9 8 7 11 11 N 1.40212 * 120.73371 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51157 * 15.46263 * 11 10 9 13 13 C 1.50706 * 109.47046 * 90.00035 * 12 11 10 14 14 O 1.20824 * 120.00104 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99717 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99614 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47075 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47592 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00057 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00356 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00434 * 23 21 19 25 25 H 1.48500 * 109.47304 * 210.00023 * 23 21 19 26 26 H 1.48498 * 109.47341 * 330.00626 * 23 21 19 27 27 C 1.35088 * 118.98152 * 195.73318 * 11 10 9 28 28 O 1.21290 * 120.13706 * 181.39281 * 27 11 10 29 29 H 1.08998 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46490 * 299.93058 * 1 2 3 31 31 H 1.09000 * 109.47185 * 59.92769 * 1 2 3 32 32 H 1.08007 * 120.06347 * 0.07909 * 6 5 4 33 33 H 1.08007 * 119.87181 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.90468 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.09541 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47123 * 329.99859 * 12 11 10 37 37 H 1.09003 * 109.47126 * 209.99271 * 12 11 10 38 38 H 1.09002 * 109.47177 * 299.99820 * 16 15 13 39 39 H 1.09001 * 109.47399 * 59.99991 * 16 15 13 40 40 H 1.09002 * 109.47153 * 300.00058 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99688 * 17 16 15 42 42 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 43 43 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 44 44 H 0.96996 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6728 -1.1687 5 6 1.8866 -2.0273 -1.1856 6 6 1.6574 -2.7009 -2.3725 7 6 1.5365 -4.0787 -2.3706 8 6 1.6443 -4.7859 -1.1872 9 6 1.8745 -4.1200 0.0027 10 6 1.9964 -2.7402 0.0071 11 7 2.2304 -2.0454 1.2023 12 6 2.6824 -2.7573 2.4003 13 6 4.1888 -2.7927 2.4252 14 8 4.8201 -2.2767 1.5335 15 8 4.8292 -3.3985 3.4375 16 6 6.2806 -3.3945 3.3957 17 6 6.8282 -4.1251 4.6233 18 6 8.3575 -4.1214 4.5791 19 6 8.8968 -4.8405 5.7886 20 1 8.2168 -5.2587 6.5160 21 6 10.2584 -4.9655 5.9661 22 7 11.0865 -4.4567 5.0801 23 14 10.9269 -5.8562 7.4658 24 1 11.0858 -7.2994 7.1543 25 1 12.2454 -5.2817 7.8359 26 1 9.9812 -5.6957 8.5994 27 6 2.0273 -0.7102 1.2337 28 8 2.2474 -0.0845 2.2492 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5128 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 1.5727 -2.1517 -3.2987 33 1 1.3581 -4.6044 -3.2970 34 1 1.5486 -5.8617 -1.1922 35 1 1.9588 -4.6740 0.9258 36 1 2.2952 -3.7761 2.3853 37 1 2.3164 -2.2425 3.2886 38 1 6.6194 -3.8992 2.4909 39 1 6.6413 -2.3658 3.3946 40 1 6.4894 -3.6199 5.5279 41 1 6.4676 -5.1536 4.6249 42 1 8.6959 -4.6268 3.6745 43 1 8.7185 -3.0929 4.5774 44 1 12.0444 -4.5443 5.2052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045993900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:53 Heat of formation + Delta-G solvation = -127.489287 kcal Electronic energy + Delta-G solvation = -28185.648888 eV Core-core repulsion = 24068.685531 eV Total energy + Delta-G solvation = -4116.963357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15788 -40.25600 -39.23097 -38.12104 -36.70206 -35.79287 -34.01828 -32.45921 -31.78173 -30.76491 -30.47080 -28.74441 -26.98344 -24.85333 -24.03228 -23.46874 -22.77377 -20.95019 -20.34939 -19.67711 -19.59203 -17.99003 -17.64480 -16.93985 -16.52850 -16.36756 -16.11443 -15.86648 -15.82998 -15.56635 -14.90925 -14.65577 -14.50237 -14.44956 -14.09114 -13.61511 -13.42447 -13.03632 -12.96131 -12.71762 -12.58515 -12.37209 -12.21208 -12.00697 -11.89443 -11.62988 -11.56716 -11.17305 -10.98328 -10.68022 -10.66727 -10.43065 -10.39537 -10.27349 -9.74926 -9.53160 -9.18039 -9.07568 -8.39643 -8.26276 -6.04235 -4.07500 0.69696 0.87318 1.75532 1.96467 2.19991 2.85420 2.89083 3.30449 3.31344 3.36659 3.40266 3.52086 4.16790 4.27493 4.37688 4.42248 4.50373 4.56086 4.70594 4.78642 4.81321 4.93359 4.97980 5.05146 5.19444 5.23348 5.31651 5.46039 5.53331 5.54529 5.59092 5.76644 5.89028 5.97847 6.07327 6.23507 6.41333 6.44372 6.51408 6.79490 6.92657 6.95715 7.27983 7.58948 7.69698 7.80896 7.93855 8.34601 8.98707 9.56823 11.07258 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.002206 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.627493 B =12689.628033 C =13359.687021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.153 0.847 4 O -0.297 6.297 5 C 0.086 3.914 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.108 4.108 9 C -0.127 4.127 10 C 0.102 3.898 11 N -0.536 5.536 12 C 0.115 3.885 13 C 0.440 3.560 14 O -0.497 6.497 15 O -0.355 6.355 16 C 0.069 3.931 17 C -0.108 4.108 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.499 3.501 28 O -0.500 6.500 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.580 3.596 -15.673 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 H 0.170 0.830 4 O -0.211 6.211 5 C 0.040 3.960 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.147 4.147 10 C 0.008 3.992 11 N -0.261 5.261 12 C -0.009 4.009 13 C 0.281 3.719 14 O -0.384 6.384 15 O -0.271 6.271 16 C -0.003 4.003 17 C -0.146 4.146 18 C -0.013 4.013 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C 0.287 3.713 28 O -0.373 6.373 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.931 4.306 -15.455 31.347 hybrid contribution 0.786 -0.520 0.960 1.345 sum -26.145 3.786 -14.494 30.133 Atomic orbital electron populations 1.22357 0.92228 1.04026 1.04762 1.22898 0.96547 0.97573 0.80547 0.83019 1.86304 1.79054 1.16162 1.39628 1.18573 1.02291 0.82597 0.92578 1.20553 1.01535 0.94370 0.96332 1.21020 1.00333 0.92952 0.98648 1.21001 0.99789 1.00361 0.91549 1.20732 1.02941 0.91156 0.99859 1.18076 1.03777 0.92709 0.84663 1.45238 1.63174 1.07665 1.10030 1.21073 0.89205 1.01042 0.89548 1.23768 0.91717 0.76009 0.80436 1.90698 1.68471 1.42156 1.37069 1.86469 1.25112 1.69870 1.45659 1.23552 0.73086 1.02069 1.01632 1.21771 0.99541 0.99143 0.94118 1.19054 0.86789 0.97738 0.97748 1.21161 0.91621 1.35875 1.07315 0.92404 1.25040 0.97128 0.95714 0.96628 1.69968 1.02835 1.45323 1.35230 0.86534 0.78347 0.79772 0.83004 1.20600 1.21176 1.19799 1.21543 0.77273 0.81377 0.91096 1.90796 1.48670 1.64587 1.33212 0.91451 0.89792 0.89473 0.84297 0.84791 0.84862 0.84862 0.85236 0.84678 0.91447 0.91476 0.92052 0.92081 0.96236 0.96224 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 9.29 37.16 0.35 -0.76 16 2 C 0.08 0.78 3.82 -27.83 -0.11 0.67 16 3 H 0.15 1.19 8.14 -51.93 -0.42 0.76 16 4 O -0.30 -3.19 10.18 -19.68 -0.20 -3.39 16 5 C 0.09 0.89 5.85 -39.10 -0.23 0.67 16 6 C -0.11 -0.88 10.00 -39.50 -0.39 -1.27 16 7 C -0.11 -0.74 10.04 -39.54 -0.40 -1.14 16 8 C -0.11 -0.76 10.04 -39.55 -0.40 -1.16 16 9 C -0.13 -1.10 9.36 -39.46 -0.37 -1.47 16 10 C 0.10 1.09 6.39 -83.49 -0.53 0.56 16 11 N -0.54 -6.38 2.21 -114.47 -0.25 -6.63 16 12 C 0.11 1.28 5.80 -5.19 -0.03 1.25 16 13 C 0.44 7.01 8.03 36.01 0.29 7.30 16 14 O -0.50 -9.64 16.18 -18.75 -0.30 -9.94 16 15 O -0.36 -6.01 10.22 -39.26 -0.40 -6.41 16 16 C 0.07 1.33 5.47 37.16 0.20 1.53 16 17 C -0.11 -2.27 5.53 -26.74 -0.15 -2.42 16 18 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 19 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 23 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.50 6.27 6.91 -10.80 -0.07 6.19 16 28 O -0.50 -7.63 16.77 5.55 0.09 -7.54 16 29 H 0.07 0.44 7.81 -51.93 -0.41 0.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.92 6.12 -52.49 -0.32 0.60 16 36 H 0.13 0.96 5.96 -51.93 -0.31 0.66 16 37 H 0.14 1.37 7.48 -51.93 -0.39 0.99 16 38 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 39 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -35.98 376.61 -8.10 -44.09 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.04 Total: -3.00 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.39 Total: -3.15 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.48 Total: -32.98 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.81 Total: -27.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.98 -8.10 -44.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045993900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.401 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds