Wall clock time and date at job start Tue Mar 31 2020 18:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.44212 * 2 1 4 4 O 1.43003 * 109.44146 * 240.07032 * 2 1 3 5 5 C 1.35982 * 116.71619 * 286.37420 * 4 2 1 6 6 C 1.38391 * 120.66719 * 147.15760 * 5 4 2 7 7 C 1.38309 * 119.87682 * 180.10218 * 6 5 4 8 8 C 1.38278 * 120.25910 * 359.97438 * 7 6 5 9 9 C 1.38288 * 120.20041 * 359.96937 * 8 7 6 10 10 C 1.38515 * 119.80927 * 0.03161 * 9 8 7 11 11 N 1.40212 * 120.73371 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.51157 * 15.46263 * 11 10 9 13 13 C 1.50706 * 109.47046 * 90.00035 * 12 11 10 14 14 O 1.20824 * 120.00104 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99717 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99614 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47075 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47592 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00057 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00356 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46744 * 90.00434 * 23 21 19 25 25 H 1.48500 * 109.47304 * 210.00023 * 23 21 19 26 26 H 1.48498 * 109.47341 * 330.00626 * 23 21 19 27 27 C 1.35088 * 118.98152 * 195.73318 * 11 10 9 28 28 O 1.21290 * 120.13706 * 181.39281 * 27 11 10 29 29 H 1.08998 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46490 * 299.93058 * 1 2 3 31 31 H 1.09000 * 109.47185 * 59.92769 * 1 2 3 32 32 H 1.08007 * 120.06347 * 0.07909 * 6 5 4 33 33 H 1.08007 * 119.87181 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.90468 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.09541 * 180.02562 * 9 8 7 36 36 H 1.09000 * 109.47123 * 329.99859 * 12 11 10 37 37 H 1.09003 * 109.47126 * 209.99271 * 12 11 10 38 38 H 1.09002 * 109.47177 * 299.99820 * 16 15 13 39 39 H 1.09001 * 109.47399 * 59.99991 * 16 15 13 40 40 H 1.09002 * 109.47153 * 300.00058 * 17 16 15 41 41 H 1.08998 * 109.47533 * 59.99688 * 17 16 15 42 42 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 43 43 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 44 44 H 0.96996 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 8 2.0060 -0.6728 -1.1687 5 6 1.8866 -2.0273 -1.1856 6 6 1.6574 -2.7009 -2.3725 7 6 1.5365 -4.0787 -2.3706 8 6 1.6443 -4.7859 -1.1872 9 6 1.8745 -4.1200 0.0027 10 6 1.9964 -2.7402 0.0071 11 7 2.2304 -2.0454 1.2023 12 6 2.6824 -2.7573 2.4003 13 6 4.1888 -2.7927 2.4252 14 8 4.8201 -2.2767 1.5335 15 8 4.8292 -3.3985 3.4375 16 6 6.2806 -3.3945 3.3957 17 6 6.8282 -4.1251 4.6233 18 6 8.3575 -4.1214 4.5791 19 6 8.8968 -4.8405 5.7886 20 1 8.2168 -5.2587 6.5160 21 6 10.2584 -4.9655 5.9661 22 7 11.0865 -4.4567 5.0801 23 14 10.9269 -5.8562 7.4658 24 1 11.0858 -7.2994 7.1543 25 1 12.2454 -5.2817 7.8359 26 1 9.9812 -5.6957 8.5994 27 6 2.0273 -0.7102 1.2337 28 8 2.2474 -0.0845 2.2492 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5128 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 1.5727 -2.1517 -3.2987 33 1 1.3581 -4.6044 -3.2970 34 1 1.5486 -5.8617 -1.1922 35 1 1.9588 -4.6740 0.9258 36 1 2.2952 -3.7761 2.3853 37 1 2.3164 -2.2425 3.2886 38 1 6.6194 -3.8992 2.4909 39 1 6.6413 -2.3658 3.3946 40 1 6.4894 -3.6199 5.5279 41 1 6.4676 -5.1536 4.6249 42 1 8.6959 -4.6268 3.6745 43 1 8.7185 -3.0929 4.5774 44 1 12.0444 -4.5443 5.2052 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045993900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:52 Heat of formation + Delta-G solvation = -148.924969 kcal Electronic energy + Delta-G solvation = -28186.578409 eV Core-core repulsion = 24068.685531 eV Total energy + Delta-G solvation = -4117.892878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96698 -41.54271 -40.08069 -38.86613 -38.00905 -36.76216 -35.99269 -33.76697 -33.09457 -31.41187 -31.33683 -29.66263 -28.73656 -25.81051 -25.10231 -24.65495 -23.69902 -22.25551 -22.08010 -20.43720 -20.32223 -19.17185 -18.62246 -18.53218 -17.90212 -17.78183 -16.93980 -16.88488 -16.61337 -16.51243 -16.35338 -15.92923 -15.62708 -15.28228 -15.11881 -14.75075 -14.30356 -14.16827 -14.04620 -13.91436 -13.77866 -13.53317 -13.30037 -13.16061 -12.91363 -12.84533 -12.54881 -12.47170 -12.28017 -12.22158 -12.16259 -12.13199 -11.74246 -11.50121 -11.42938 -11.25166 -11.12472 -10.59899 -9.70810 -8.99409 -8.24069 -6.36136 0.01448 0.26883 0.78825 0.92992 1.18580 1.40256 1.42096 1.53339 1.71753 2.17784 2.39723 2.66510 2.79361 3.09847 3.39236 3.53193 3.66972 3.70986 3.84460 3.90578 3.94229 3.97093 4.01335 4.24308 4.32255 4.33210 4.43889 4.53158 4.61825 4.68131 4.73511 4.78364 4.89293 5.00543 5.02391 5.20836 5.22729 5.28537 5.45686 5.51047 5.58809 5.65410 5.70074 5.76792 6.15407 6.22082 6.36784 6.50958 6.79790 7.33686 8.88368 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.002206 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.627493 B =12689.628033 C =13359.687021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 H 0.161 0.839 4 O -0.311 6.311 5 C 0.063 3.937 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.109 4.109 9 C -0.133 4.133 10 C 0.071 3.929 11 N -0.538 5.538 12 C 0.118 3.882 13 C 0.439 3.561 14 O -0.537 6.537 15 O -0.349 6.349 16 C 0.079 3.921 17 C -0.092 4.092 18 C 0.025 3.975 19 C -0.543 4.543 20 H 0.067 0.933 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.971 3.029 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.261 1.261 27 C 0.489 3.511 28 O -0.540 6.540 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.073 0.927 42 H -0.003 1.003 43 H -0.007 1.007 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.580 1.713 -15.845 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.178 0.822 4 O -0.226 6.226 5 C 0.017 3.983 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.153 4.153 10 C -0.022 4.022 11 N -0.263 5.263 12 C -0.005 4.005 13 C 0.282 3.718 14 O -0.426 6.426 15 O -0.265 6.265 16 C 0.006 3.994 17 C -0.129 4.129 18 C -0.012 4.012 19 C -0.580 4.580 20 H 0.085 0.915 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.185 1.185 27 C 0.279 3.721 28 O -0.416 6.416 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.172 0.828 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.189 0.811 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.971 2.396 -15.651 33.015 hybrid contribution 1.378 0.037 0.878 1.635 sum -27.592 2.433 -14.772 31.392 Atomic orbital electron populations 1.22307 0.89728 1.04246 1.05939 1.23073 0.98457 0.97289 0.78961 0.82228 1.86268 1.79672 1.16773 1.39904 1.18949 1.03412 0.82490 0.93455 1.20885 1.01093 0.95230 0.96158 1.21450 0.98343 0.92433 0.99890 1.21406 0.98530 1.01785 0.90995 1.21047 1.02480 0.90421 1.01340 1.18370 1.05851 0.93666 0.84273 1.45333 1.62565 1.07708 1.10675 1.21348 0.85377 1.03597 0.90133 1.24810 0.93465 0.74412 0.79131 1.90684 1.69633 1.43810 1.38458 1.86460 1.23480 1.70210 1.46336 1.23159 0.74783 1.00939 1.00558 1.21460 0.96045 1.00263 0.95174 1.18938 0.90354 0.95562 0.96328 1.21613 0.92313 1.36029 1.08081 0.91459 1.26052 0.97535 0.96490 0.99992 1.70110 1.03259 1.46719 1.37442 0.85354 0.77613 0.78573 0.78954 1.19511 1.20895 1.18489 1.22202 0.76628 0.81712 0.91576 1.90760 1.50710 1.65420 1.34724 0.91662 0.89175 0.87591 0.82762 0.81722 0.82131 0.83367 0.81077 0.83553 0.91758 0.92757 0.91462 0.90795 0.98447 0.98883 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.29 71.98 0.67 -1.26 16 2 C 0.08 1.53 3.82 29.88 0.11 1.64 16 3 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 4 O -0.31 -6.71 10.18 -93.35 -0.95 -7.66 16 5 C 0.06 1.27 5.85 22.58 0.13 1.40 16 6 C -0.11 -1.65 10.00 22.32 0.22 -1.43 16 7 C -0.10 -1.07 10.04 22.30 0.22 -0.84 16 8 C -0.11 -1.21 10.04 22.29 0.22 -0.98 16 9 C -0.13 -2.03 9.36 22.35 0.21 -1.82 16 10 C 0.07 1.47 6.39 38.14 0.24 1.72 16 11 N -0.54 -12.66 2.21 -634.29 -1.40 -14.06 16 12 C 0.12 2.53 5.80 85.63 0.50 3.03 16 13 C 0.44 13.94 8.03 71.24 0.57 14.51 16 14 O -0.54 -21.34 16.18 21.97 0.36 -20.99 16 15 O -0.35 -11.66 10.22 -51.42 -0.53 -12.19 16 16 C 0.08 3.08 5.47 71.98 0.39 3.47 16 17 C -0.09 -3.87 5.53 30.59 0.17 -3.70 16 18 C 0.03 1.36 4.97 29.84 0.15 1.51 16 19 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 20 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 21 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 22 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 23 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 27 C 0.49 12.54 6.91 87.64 0.61 13.15 16 28 O -0.54 -17.08 16.77 -3.06 -0.05 -17.13 16 29 H 0.06 0.80 7.81 -2.39 -0.02 0.78 16 30 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.15 1.64 6.12 -2.91 -0.02 1.63 16 36 H 0.17 2.12 5.96 -2.39 -0.01 2.11 16 37 H 0.15 2.85 7.48 -2.39 -0.02 2.83 16 38 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 39 H 0.05 2.23 8.13 -2.39 -0.02 2.21 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -80.12 376.61 5.87 -74.25 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.01 Total: 8.89 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.12 Total: -0.03 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.11 Total: -71.43 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -1.17 Total: -57.97 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -80.12 5.87 -74.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045993900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.678 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds