Wall clock time and date at job start Tue Mar 31 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 O 1.45199 * 109.47018 * 240.00036 * 2 1 3 5 5 C 1.34710 * 117.00190 * 89.99899 * 4 2 1 6 6 O 1.21475 * 119.99930 * 359.97438 * 5 4 2 7 7 C 1.47726 * 119.99937 * 179.97438 * 5 4 2 8 8 C 1.39651 * 120.14028 * 359.97438 * 7 5 4 9 9 C 1.37982 * 119.88568 * 179.97438 * 8 7 5 10 10 C 1.38146 * 120.11886 * 0.03177 * 9 8 7 11 11 C 1.38762 * 120.28225 * 359.96721 * 10 9 8 12 12 C 1.37690 * 120.19008 * 0.23053 * 11 10 9 13 13 C 1.51116 * 107.25488 * 179.97438 * 11 10 9 14 14 O 1.43929 * 105.95493 * 17.71990 * 13 11 10 15 15 C 1.43924 * 104.97377 * 331.48401 * 14 13 11 16 16 C 1.50697 * 109.47081 * 119.99869 * 2 1 3 17 17 O 1.21281 * 120.00041 * 120.00191 * 16 2 1 18 18 N 1.34783 * 120.00026 * 299.99835 * 16 2 1 19 19 C 1.46494 * 119.99715 * 0.02562 * 18 16 2 20 20 C 1.46495 * 119.99591 * 180.02562 * 18 16 2 21 21 C 1.50700 * 109.47075 * 90.00469 * 20 18 16 22 22 H 1.08003 * 119.99967 * 359.97438 * 21 20 18 23 23 C 1.37880 * 119.99999 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99979 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46964 * 90.00417 * 25 23 21 27 27 H 1.48501 * 109.47079 * 210.00061 * 25 23 21 28 28 H 1.48493 * 109.47315 * 330.00508 * 25 23 21 29 29 H 1.09001 * 109.47650 * 60.00170 * 1 2 3 30 30 H 1.08997 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47358 * 300.00271 * 1 2 3 32 32 H 1.07993 * 120.05388 * 0.02702 * 8 7 5 33 33 H 1.08004 * 119.93747 * 180.02562 * 9 8 7 34 34 H 1.07997 * 120.10286 * 179.69275 * 12 11 10 35 35 H 1.09003 * 110.15171 * 136.84348 * 13 11 10 36 36 H 1.08997 * 110.15521 * 258.59461 * 13 11 10 37 37 H 1.09001 * 110.15703 * 147.64739 * 15 14 13 38 38 H 1.08997 * 110.15712 * 269.32759 * 15 14 13 39 39 H 1.09002 * 109.47522 * 90.00004 * 19 18 16 40 40 H 1.09007 * 109.46964 * 209.99629 * 19 18 16 41 41 H 1.08999 * 109.47521 * 329.99286 * 19 18 16 42 42 H 1.09005 * 109.46932 * 210.00121 * 20 18 16 43 43 H 1.09001 * 109.47607 * 329.99804 * 20 18 16 44 44 H 0.96999 * 119.99716 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2178 0.0667 -2.2851 6 8 1.9968 1.2608 -2.2544 7 6 2.7101 -0.5618 -3.5281 8 6 2.9656 -1.9342 -3.5664 9 6 3.4247 -2.5158 -4.7303 10 6 3.6324 -1.7429 -5.8564 11 6 3.3805 -0.3787 -5.8250 12 6 2.9259 0.2150 -4.6688 13 6 3.7040 0.1685 -7.1959 14 8 3.7299 -0.9674 -8.0793 15 6 4.1187 -2.0761 -7.2481 16 6 2.0323 -0.7104 1.2305 17 8 2.7296 -1.6964 1.1192 18 7 1.7067 -0.2498 2.4546 19 6 0.8641 0.9409 2.5889 20 6 2.1956 -0.9401 3.6507 21 6 3.5229 -0.3560 4.0606 22 1 3.9590 0.4487 3.4872 23 6 4.1806 -0.8489 5.1676 24 7 3.6494 -1.8284 5.8662 25 14 5.8263 -0.1253 5.6753 26 1 5.6025 1.0003 6.6177 27 1 6.6435 -1.1722 6.3398 28 1 6.5410 0.3712 4.4721 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.8032 -2.5393 -2.6868 33 1 3.6222 -3.5772 -4.7610 34 1 2.7350 1.2777 -4.6445 35 1 2.9331 0.8719 -7.5109 36 1 4.6778 0.6580 -7.1847 37 1 3.6475 -2.9935 -7.6009 38 1 5.2031 -2.1862 -7.2517 39 1 -0.1838 0.6427 2.6225 40 1 1.1218 1.4666 3.5084 41 1 1.0273 1.5997 1.7360 42 1 1.4776 -0.8150 4.4613 43 1 2.3170 -2.0014 3.4337 44 1 4.1123 -2.1754 6.6448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050026355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:20 Heat of formation + Delta-G solvation = -117.226731 kcal Electronic energy + Delta-G solvation = -27952.378042 eV Core-core repulsion = 23835.859703 eV Total energy + Delta-G solvation = -4116.518339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24477 -40.50396 -39.02785 -37.59714 -36.38653 -34.99146 -32.98784 -32.20726 -32.01100 -31.31591 -28.41750 -27.71241 -26.37157 -25.93104 -24.35985 -23.33958 -22.35609 -22.07599 -20.69926 -18.94984 -18.23537 -17.08621 -16.88203 -16.67279 -16.56093 -16.31268 -16.08159 -15.75040 -15.48575 -14.80215 -14.62895 -14.59722 -14.12242 -13.89679 -13.68752 -13.42019 -13.20477 -13.06628 -12.94661 -12.52920 -12.44948 -12.21041 -12.13672 -12.10732 -11.70283 -11.44354 -11.32946 -11.17909 -10.94791 -10.75776 -10.69504 -10.59602 -10.53597 -10.19824 -9.68401 -9.37751 -9.05159 -8.95659 -8.47740 -7.76948 -6.08834 -4.13831 0.27956 0.88910 2.25372 2.35637 3.21167 3.28029 3.34345 3.34951 3.40067 3.45557 3.69469 3.87949 4.13415 4.40222 4.42910 4.54200 4.77729 4.80738 4.89245 4.91909 4.94313 5.02069 5.06108 5.09956 5.24177 5.25905 5.32240 5.44543 5.52356 5.60536 5.62823 5.77505 5.80749 5.83521 5.94196 5.96845 6.18892 6.20306 6.32920 6.37629 6.94309 7.35090 7.42392 7.62390 7.87128 8.16762 8.24720 8.80520 8.95442 9.51344 10.99295 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002411 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.788207 B =11613.051494 C =12337.562206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.107 0.893 4 O -0.319 6.319 5 C 0.510 3.490 6 O -0.507 6.507 7 C -0.116 4.116 8 C -0.049 4.049 9 C -0.106 4.106 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.029 4.029 13 C 0.094 3.906 14 O -0.360 6.360 15 C 0.087 3.913 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.595 5.595 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.529 4.529 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 2.909 -23.341 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.234 6.234 5 C 0.355 3.645 6 O -0.396 6.396 7 C -0.117 4.117 8 C -0.067 4.067 9 C -0.124 4.124 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.047 4.047 13 C 0.018 3.982 14 O -0.278 6.278 15 C 0.011 3.989 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.329 5.329 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.588 2.596 -23.396 23.983 hybrid contribution 0.927 0.611 0.802 1.370 sum -3.661 3.206 -22.594 23.112 Atomic orbital electron populations 1.22411 0.92312 1.04177 1.04388 1.22657 0.95757 0.97719 0.82589 0.87501 1.86632 1.76546 1.40899 1.19363 1.21079 0.74397 0.85050 0.84018 1.90813 1.48589 1.15811 1.84417 1.19022 1.06608 0.94463 0.91602 1.21650 0.92976 0.93607 0.98439 1.20435 1.00401 1.00435 0.91115 1.21391 0.97337 0.94767 0.96523 1.20905 1.02506 0.95061 0.96495 1.20385 0.94369 1.00522 0.89461 1.21751 1.02334 0.89476 0.84654 1.89095 1.90372 1.17417 1.30955 1.21853 1.00091 0.91392 0.85555 1.19741 0.81713 0.85402 0.83804 1.90702 1.36941 1.26020 1.85869 1.48058 1.49780 1.28384 1.06643 1.21895 0.93959 0.88038 1.02973 1.19358 0.94381 0.93749 0.79684 1.21421 1.04858 1.19208 1.11305 0.92427 1.24934 0.98004 0.94909 0.96211 1.69929 1.39074 1.25980 1.18288 0.86481 0.83541 0.78704 0.78624 1.20585 1.21022 1.19876 0.91315 0.90933 0.88758 0.83063 0.84476 0.84049 0.88129 0.90126 0.87950 0.89867 0.92963 0.90268 0.92263 0.94561 0.93625 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.19 37.16 0.34 -1.90 16 2 C 0.07 1.18 2.18 -27.88 -0.06 1.12 16 3 H 0.11 1.71 6.42 -51.93 -0.33 1.38 16 4 O -0.32 -5.34 8.67 -47.20 -0.41 -5.75 16 5 C 0.51 7.68 7.87 34.61 0.27 7.96 16 6 O -0.51 -8.22 15.61 -19.25 -0.30 -8.52 16 7 C -0.12 -1.45 5.88 -104.95 -0.62 -2.06 16 8 C -0.05 -0.54 9.62 -39.15 -0.38 -0.92 16 9 C -0.11 -0.95 10.03 -39.71 -0.40 -1.35 16 10 C -0.10 -0.89 6.33 -104.25 -0.66 -1.55 16 11 C -0.15 -1.41 6.31 -104.42 -0.66 -2.06 16 12 C -0.03 -0.31 9.59 -39.24 -0.38 -0.69 16 13 C 0.09 0.71 7.63 36.21 0.28 0.99 16 14 O -0.36 -3.22 11.72 -35.23 -0.41 -3.64 16 15 C 0.09 0.62 7.63 36.22 0.28 0.90 16 16 C 0.51 10.78 7.15 -10.98 -0.08 10.70 16 17 O -0.52 -13.30 16.08 -14.10 -0.23 -13.52 16 18 N -0.60 -12.44 2.86 -182.96 -0.52 -12.96 16 19 C 0.08 1.14 8.80 59.84 0.53 1.67 16 20 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 21 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 22 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 25 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.05 4.53 -51.93 -0.24 0.82 16 32 H 0.15 1.70 7.61 -52.49 -0.40 1.30 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.14 1.40 7.65 -52.49 -0.40 0.99 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.65 6.95 -51.93 -0.36 0.29 16 40 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -35.06 373.05 -8.28 -43.35 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.77 Total: -1.35 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -1.98 Total: 5.55 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.21 Total: -38.52 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.35 Total: -31.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.06 -8.28 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050026355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.879 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds